Clone Name | rbasd26b13 |
---|---|
Clone Library Name | barley_pub |
>gb|AC120791.13| Mus musculus chromosome 7, clone RP23-56I4, complete sequence Length = 246249 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Plus Query: 472 ctcaaggaggccaaaagaaggg 493 |||||||||||||||||||||| Sbjct: 218821 ctcaaggaggccaaaagaaggg 218842
>gb|AC123030.4| Mus musculus BAC clone RP24-573I5 from chromosome 7, complete sequence Length = 173971 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Plus Query: 472 ctcaaggaggccaaaagaaggg 493 |||||||||||||||||||||| Sbjct: 30915 ctcaaggaggccaaaagaaggg 30936
>gb|AC138528.8| Mus musculus chromosome 3, clone RP23-329L9, complete sequence Length = 188290 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 472 ctcaaggaggccaaaagaagg 492 ||||||||||||||||||||| Sbjct: 151215 ctcaaggaggccaaaagaagg 151235
>gb|AC155072.1| Homo sapiens chromosome 12 clone fa0727, complete sequence Length = 32000 Score = 40.1 bits (20), Expect = 8.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 103 tgtgtacagatttgcagagatttgagag 130 |||||||||||||||||| | ||||||| Sbjct: 12907 tgtgtacagatttgcagacaattgagag 12934
>gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-27, complete genome Length = 5237682 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 525 atttcacaatatctccactt 544 |||||||||||||||||||| Sbjct: 1809763 atttcacaatatctccactt 1809744
>gb|AC068605.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-284I15, complete sequence Length = 198551 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 603 caattttcctgaccacatct 622 |||||||||||||||||||| Sbjct: 34407 caattttcctgaccacatct 34388
>gb|AE017334.2| Bacillus anthracis str. 'Ames Ancestor', complete genome Length = 5227419 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 525 atttcacaatatctccactt 544 |||||||||||||||||||| Sbjct: 1771537 atttcacaatatctccactt 1771518
>gb|AE017225.1| Bacillus anthracis str. Sterne, complete genome Length = 5228663 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 525 atttcacaatatctccactt 544 |||||||||||||||||||| Sbjct: 1771481 atttcacaatatctccactt 1771462
>ref|XM_707544.1| Candida albicans SC5314 hypothetical protein (CaO19.4183), mRNA Length = 2664 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 555 tgacaccagtacttgcatca 574 |||||||||||||||||||| Sbjct: 2473 tgacaccagtacttgcatca 2454
>ref|XM_707694.1| Candida albicans SC5314 hypothetical protein (CaO19.11659), mRNA Length = 2664 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 555 tgacaccagtacttgcatca 574 |||||||||||||||||||| Sbjct: 2473 tgacaccagtacttgcatca 2454
>gb|AC121497.15| Mus musculus chromosome 6, clone RP23-2M23, complete sequence Length = 231059 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 603 caattttcctgaccacatct 622 |||||||||||||||||||| Sbjct: 121424 caattttcctgaccacatct 121443
>gb|AC078859.13| Homo sapiens 3 BAC RP11-588N12 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 176802 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 601 tccaattttcctgaccacat 620 |||||||||||||||||||| Sbjct: 167390 tccaattttcctgaccacat 167409
>gb|AC135048.2| Homo sapiens chromosome 16 clone RP11-1072A3, complete sequence Length = 177719 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 611 ctgaccacatctctatgcctcagt 634 |||||||||||||| ||||||||| Sbjct: 28786 ctgaccacatctctgtgcctcagt 28763
>gb|AC125119.2| Mus musculus BAC clone RP24-266E24 from chromosome 6, complete sequence Length = 194445 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 595 cttccctccaattttcctga 614 |||||||||||||||||||| Sbjct: 3544 cttccctccaattttcctga 3563
>gb|DQ153261.1| Bacillus weihenstephanensis strain WSBC 10394 NheA (nheA), NheB (nheB), and NheC (nheC) genes, complete cds Length = 4517 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 525 atttcacaatatctccactt 544 |||||||||||||||||||| Sbjct: 1496 atttcacaatatctccactt 1477
>gb|DQ153260.1| Bacillus weihenstephanensis strain WSBC 10386 NheA (nheA), NheB (nheB), and NheC (nheC) genes, complete cds Length = 4524 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 525 atttcacaatatctccactt 544 |||||||||||||||||||| Sbjct: 1497 atttcacaatatctccactt 1478
>gb|DQ153259.1| Bacillus weihenstephanensis strain WSBC 10204 NheA (nheA), NheB (nheB), and NheC (nheC) genes, complete cds Length = 4504 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 525 atttcacaatatctccactt 544 |||||||||||||||||||| Sbjct: 1511 atttcacaatatctccactt 1492
>gb|DQ153258.1| Bacillus weihenstephanensis strain NVH 453-92 NheA (nheA), NheB (nheB), and NheC (nheC) genes, complete cds Length = 4513 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 525 atttcacaatatctccactt 544 |||||||||||||||||||| Sbjct: 1494 atttcacaatatctccactt 1475
>gb|DQ153257.1| Bacillus cereus strain NVH 0075-95 NheA (nheA), NheB (nheB), and NheC (nheC) genes, complete cds Length = 4463 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 525 atttcacaatatctccactt 544 |||||||||||||||||||| Sbjct: 1476 atttcacaatatctccactt 1457
>gb|CP000001.1| Bacillus cereus E33L, complete genome Length = 5300915 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 525 atttcacaatatctccactt 544 |||||||||||||||||||| Sbjct: 1796891 atttcacaatatctccactt 1796872
>emb|AL442071.30| Human DNA sequence from clone RP11-420K8 on chromosome 1 Contains part of the MACF1 gene for microtubule-actin crosslinking factor 1, a novel gene, a heat shock 10kDa protein 1 (chaperonin 10) (HSPE1) pseudogene and a CpG island, complete sequence Length = 121295 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 gatttgcagagatttgagag 130 |||||||||||||||||||| Sbjct: 73430 gatttgcagagatttgagag 73449
>emb|AL161740.16| Human DNA sequence from clone RP6-239D12 on chromosome 1p32.1-33 Contains 3' end of the DAB1 gene for disabled homolog 1 (Drosophila), a novel gene and the 5' end of a novel gene, complete sequence Length = 60856 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 290 ttctggagaacgtaagggag 309 |||||||||||||||||||| Sbjct: 16675 ttctggagaacgtaagggag 16656
>emb|AL606470.15| Mouse DNA sequence from clone RP23-293J11 on chromosome 11 Contains a Friedreich ataxia protein (Frda) pseudogene, complete sequence Length = 203970 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 108 acagatttgcagagatttga 127 |||||||||||||||||||| Sbjct: 132052 acagatttgcagagatttga 132033
>gb|DQ019312.1| Bacillus cereus strain F4430/73 non-hemolytic enterotoxin operon, partial sequence Length = 3160 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 525 atttcacaatatctccactt 544 |||||||||||||||||||| Sbjct: 1357 atttcacaatatctccactt 1338
>dbj|AP007171.1| Aspergillus oryzae RIB40 genomic DNA, SC011 Length = 2505489 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 39 catattacggcaaatataca 58 |||||||||||||||||||| Sbjct: 454371 catattacggcaaatataca 454390
>gb|AF325332.1|F325326S07 Homo sapiens macrophin 1 isoforms (MACF1) gene, exons 22, 23, and 24 Length = 6799 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 gatttgcagagatttgagag 130 |||||||||||||||||||| Sbjct: 2679 gatttgcagagatttgagag 2698
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 261 aactcatcttcgacgacccc 280 |||||||||||||||||||| Sbjct: 753684 aactcatcttcgacgacccc 753665
>gb|AC140063.13| Homo sapiens 12 BAC RP11-292I17 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 61695 Score = 40.1 bits (20), Expect = 8.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 103 tgtgtacagatttgcagagatttgagag 130 |||||||||||||||||| | ||||||| Sbjct: 15534 tgtgtacagatttgcagacaattgagag 15507
>gb|AC108476.5| Homo sapiens BAC clone RP11-1413K20 from 2, complete sequence Length = 139342 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 619 atctctatgcctcagtgatc 638 |||||||||||||||||||| Sbjct: 128853 atctctatgcctcagtgatc 128834
>gb|AC135050.3| Homo sapiens chromosome 16 clone RP11-196G11, complete sequence Length = 182230 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 611 ctgaccacatctctatgcctcagt 634 |||||||||||||| ||||||||| Sbjct: 33823 ctgaccacatctctgtgcctcagt 33846
>gb|AC108846.15| Mus musculus chromosome 9, clone RP23-12I4, complete sequence Length = 212729 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 474 caaggaggccaaaagaaggg 493 |||||||||||||||||||| Sbjct: 169783 caaggaggccaaaagaaggg 169802
>gb|AC154008.1| Mus musculus 6 BAC RP24-470H20 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 139613 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 595 cttccctccaattttcctga 614 |||||||||||||||||||| Sbjct: 76001 cttccctccaattttcctga 76020
>dbj|AP005657.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0427G12 Length = 185545 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 261 aactcatcttcgacgacccc 280 |||||||||||||||||||| Sbjct: 52904 aactcatcttcgacgacccc 52885
>dbj|AB099298.1| Bacillus thuringiensis genes for non hemolytic enterotoxin A, non hemolytic enterotoxin B, non hemolytic enterotoxin C, complete cds Length = 3594 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 525 atttcacaatatctccactt 544 |||||||||||||||||||| Sbjct: 604 atttcacaatatctccactt 585
>emb|AJ937161.1| Bacillus cereus partial nheA gene for Enterotoxin A, strain SL Length = 463 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 525 atttcacaatatctccactt 544 |||||||||||||||||||| Sbjct: 323 atttcacaatatctccactt 304
>emb|AJ937160.1| Bacillus cereus partial nheA gene for Enterotoxin A, strain SD Length = 417 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 525 atttcacaatatctccactt 544 |||||||||||||||||||| Sbjct: 300 atttcacaatatctccactt 281
>emb|AJ937156.1| Bacillus cereus partial nheA gene for Enterotoxin A, strain BS Length = 663 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 525 atttcacaatatctccactt 544 |||||||||||||||||||| Sbjct: 394 atttcacaatatctccactt 375
>emb|AJ937155.1| Bacillus cereus partial nheA gene for Enterotoxin A, strain 11 Length = 663 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 525 atttcacaatatctccactt 544 |||||||||||||||||||| Sbjct: 394 atttcacaatatctccactt 375
>emb|AJ937154.1| Bacillus cereus partial nheA gene for Enterotoxin A, strain SM Length = 360 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 525 atttcacaatatctccactt 544 |||||||||||||||||||| Sbjct: 242 atttcacaatatctccactt 223
>emb|AJ937153.1| Bacillus cereus partial nheA gene for Enterotoxin A, strain C33 Length = 663 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 525 atttcacaatatctccactt 544 |||||||||||||||||||| Sbjct: 394 atttcacaatatctccactt 375
>emb|AJ937152.1| Bacillus cereus partial nheA gene for Enterotoxin A, strain F2085/98 Length = 436 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 525 atttcacaatatctccactt 544 |||||||||||||||||||| Sbjct: 294 atttcacaatatctccactt 275
>emb|AJ937151.1| Bacillus cereus partial nheA gene for Enterotoxin A, strain PF Length = 663 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 525 atttcacaatatctccactt 544 |||||||||||||||||||| Sbjct: 394 atttcacaatatctccactt 375
>emb|AJ937150.1| Bacillus cereus partial nheA gene for Enterotoxin A, strain I15 Length = 663 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 525 atttcacaatatctccactt 544 |||||||||||||||||||| Sbjct: 394 atttcacaatatctccactt 375
>emb|AJ937149.1| Bacillus cereus partial nheA gene for Enterotoxin A, strain LMG 17615 Length = 654 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 525 atttcacaatatctccactt 544 |||||||||||||||||||| Sbjct: 394 atttcacaatatctccactt 375
>emb|AJ937148.1| Bacillus cereus partial nheA gene for Enterotoxin A, strain F4815/94 Length = 663 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 525 atttcacaatatctccactt 544 |||||||||||||||||||| Sbjct: 394 atttcacaatatctccactt 375
>emb|AJ937147.1| Bacillus cereus partial nheA gene for Enterotoxin A, strain F0285/78 Length = 663 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 525 atttcacaatatctccactt 544 |||||||||||||||||||| Sbjct: 394 atttcacaatatctccactt 375
>emb|AJ937146.1| Bacillus thuringiensis partial nheA gene for Enterotoxin A, strain CIP 53137 Length = 663 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 525 atttcacaatatctccactt 544 |||||||||||||||||||| Sbjct: 394 atttcacaatatctccactt 375
>emb|AJ937145.1| Bacillus cereus partial nheA gene for Enterotoxin A, strain C13 Length = 663 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 525 atttcacaatatctccactt 544 |||||||||||||||||||| Sbjct: 394 atttcacaatatctccactt 375
>emb|AJ937144.1| Bacillus cereus partial nheA gene for Enterotoxin A, strain WSBC 10204 Length = 663 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 525 atttcacaatatctccactt 544 |||||||||||||||||||| Sbjct: 394 atttcacaatatctccactt 375
>emb|AJ937143.1| Bacillus cereus partial nheA gene for Enterotoxin A, strain 1 Length = 663 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 525 atttcacaatatctccactt 544 |||||||||||||||||||| Sbjct: 394 atttcacaatatctccactt 375
>emb|AJ937141.1| Bacillus cereus partial nheA gene for Enterotoxin A, strain C35 Length = 663 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 525 atttcacaatatctccactt 544 |||||||||||||||||||| Sbjct: 394 atttcacaatatctccactt 375
>emb|AJ937140.1| Bacillus cereus partial nheA gene for Enterotoxin A, strain I21 Length = 665 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 525 atttcacaatatctccactt 544 |||||||||||||||||||| Sbjct: 394 atttcacaatatctccactt 375
>gb|CP000009.1| Gluconobacter oxydans 621H, complete genome Length = 2702173 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 393 ccgcaccagctttgctccac 412 |||||||||||||||||||| Sbjct: 2019792 ccgcaccagctttgctccac 2019773
>gb|AY835995.1| Bacillus cereus isolate A6 non-hemolytic enterotoxin A (nheA), non-hemolytic enterotoxin B (nheB), and non-hemolytic enterotoxin C (nheC) genes, complete cds Length = 4187 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 525 atttcacaatatctccactt 544 |||||||||||||||||||| Sbjct: 1192 atttcacaatatctccactt 1173
>gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome Length = 5411809 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 51 aatatacatgcttgctctctttct 74 ||||||| |||||||||||||||| Sbjct: 4600484 aatatacgtgcttgctctctttct 4600507 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 525 atttcacaatatctccactt 544 |||||||||||||||||||| Sbjct: 1765851 atttcacaatatctccactt 1765832
>gb|AE016879.1| Bacillus anthracis str. Ames, complete genome Length = 5227293 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 525 atttcacaatatctccactt 544 |||||||||||||||||||| Sbjct: 1771414 atttcacaatatctccactt 1771395
>gb|AE017194.1| Bacillus cereus ATCC 10987, complete genome Length = 5224283 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 525 atttcacaatatctccactt 544 |||||||||||||||||||| Sbjct: 1903336 atttcacaatatctccactt 1903317
>gb|AC170997.2| Mus musculus BAC clone RP24-198N9 from chromosome 9, complete sequence Length = 146891 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 474 caaggaggccaaaagaaggg 493 |||||||||||||||||||| Sbjct: 36353 caaggaggccaaaagaaggg 36372 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,150,241 Number of Sequences: 3902068 Number of extensions: 5150241 Number of successful extensions: 85991 Number of sequences better than 10.0: 58 Number of HSP's better than 10.0 without gapping: 58 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 85708 Number of HSP's gapped (non-prelim): 283 length of query: 652 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 629 effective length of database: 17,143,297,704 effective search space: 10783134255816 effective search space used: 10783134255816 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)