>RPOA_PINKO (Q85X01) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase alpha subunit) (RNA
           polymerase alpha subunit)
          Length = 335

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 259 RGAKRRPSSNSHYFTRTGQTKQNVLFRHV 345
           +G+   P   SH  T TG+TK+ + F+H+
Sbjct: 244 KGSNMLPFPLSHVLTDTGETKEKIAFKHI 272

>R23A2_CAEEL (Q20647) 60S ribosomal protein L23a 2|
          Length = 146

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
 Frame = +1

Query: 139 QGLQTAVHFSRPRAMAVTGCPNYIQ----SRDKLHGWEVCR 249
           + ++T+VHF RP+ +     P Y +    +RDKL  + V +
Sbjct: 28  KNVRTSVHFRRPKTLVTARAPRYARKSAPARDKLDSFAVIK 68

>XYLB_BUTFI (P45982) Xylosidase/arabinosidase [Includes: Beta-xylosidase (EC|
           3.2.1.37) (1,4-beta-D-xylan xylohydrolase) (Xylan
           1,4-beta-xylosidase); Alpha-N-arabinofuranosidase (EC
           3.2.1.55) (Arabinosidase)]
          Length = 517

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +1

Query: 169 RPRAMAVTGCPNYIQSRDKLHGWEV-CRLKLRGAK 270
           RP A+  TG P+Y+  R K H +   C LK   AK
Sbjct: 359 RPEAIENTGNPSYLGIRQKTHSFRASCGLKFTPAK 393

>TMEM1_HUMAN (P48553) Transmembrane protein 1 (Epilepsy holoprosencephaly|
            candidate 1 protein) (EHOC-1) (GT334 protein)
          Length = 1259

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 9/60 (15%)
 Frame = +1

Query: 61   QTHRKGKKKEYT--CVITYDHNVQEENPQGLQT-------AVHFSRPRAMAVTGCPNYIQ 213
            + HRK K K+ T  C++T DH V  + P  + +       +V F    ++  +G   Y+Q
Sbjct: 902  EPHRKHKDKQRTGRCMVTTDHKVSIDCPWSIYSTVIALTFSVPFRTTHSLLSSGTRKYVQ 961

>SWR1_YARLI (Q6CA87) Helicase SWR1 (EC 3.6.1.-)|
          Length = 1772

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = +1

Query: 79   KKKEYTCVITYDHNVQEENPQGLQTAVHFSRPRAMAVTGCP 201
            +K+ +  ++   HN++    Q  Q+ +HF+  R + +TG P
Sbjct: 1028 RKRWHYMILDEAHNIKNFRSQRWQSLLHFNTVRRLLLTGTP 1068

>BPA1_HUMAN (Q03001) Bullous pemphigoid antigen 1 isoforms 1/2/3/4/5/8 (230 kDa|
            bullous pemphigoid antigen) (BPA) (Hemidesmosomal plaque
            protein) (Dystonia musculorum protein) (Dystonin)
            (Fragment)
          Length = 3214

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +1

Query: 46   LHMYTQTHRKGKKKEYTCVITYDHNVQEENPQGLQTAVHFSR 171
            L + +  H KGK +     IT  H V E+N Q L + +H  R
Sbjct: 2036 LELESLNHEKGKLQREVDRITRAHAVAEKNIQHLNSQIHSFR 2077

>YEB6_YEAST (P39997) Hypothetical 57.4 kDa protein in PMP2-VAC8 intergenic|
           region
          Length = 493

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
 Frame = -1

Query: 279 WTTFCSSKFQPANLPAVQFVSRLDVVW--AACHSHGSWTAKMH 157
           W  F SS+F+P NL A  + +  D +W      S G +    H
Sbjct: 151 WDNFTSSEFRPNNLDARIWSNTADPIWQLLQTESQGEYKVATH 193

>DALY_DROME (Q24114) Division abnormally delayed protein precursor (Dally|
           protein)
          Length = 626

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 12/81 (14%)
 Frame = +1

Query: 115 HNVQEENPQG---------LQTAVHFSRPRAMAVTGCPNYIQSRDKLHGWEV---CRLKL 258
           HN  E +P G         L  +VH S     A+      +   D L+G ++   C+L L
Sbjct: 247 HNFDEMHPFGDIPQQVQSNLGKSVHMSNVFMNALLQAAEVLSEADALYGEQLTDTCKLHL 306

Query: 259 RGAKRRPSSNSHYFTRTGQTK 321
                 P+ N H+ +   +TK
Sbjct: 307 LKMHYCPNCNGHHSSSRSETK 327

>ZN490_HUMAN (Q9ULM2) Zinc finger protein 490|
          Length = 529

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
 Frame = +1

Query: 196 CPNYIQSRDKLHGWE---VCRLKLRGAKRRPSSNSHYFTRTG 312
           CP Y++S +K H  E   VCR   R      S   H  T TG
Sbjct: 317 CPTYLRSHEKTHTGEKPFVCRECGRAFFSHSSLRKHVKTHTG 358

>NOX5_HUMAN (Q96PH1) NADPH oxidase 5 (EC 1.6.3.-)|
          Length = 765

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 210 DVVWAACHSHGSWTAKMHSSLKA 142
           D +W    S G WT +++ S KA
Sbjct: 502 DTIWLHIRSQGQWTNRLYESFKA 524

>KDSA_MANSM (Q65TB4) 2-dehydro-3-deoxyphosphooctonate aldolase (EC 2.5.1.55)|
           (Phospho-2-dehydro-3-deoxyoctonate aldolase)
           (3-deoxy-D-manno-octulosonic acid 8-phosphate
           synthetase) (KDO-8-phosphate synthetase) (KDO 8-P
           synthase) (KDOPS)
          Length = 284

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 21/79 (26%), Positives = 35/79 (44%)
 Frame = +1

Query: 112 DHNVQEENPQGLQTAVHFSRPRAMAVTGCPNYIQSRDKLHGWEVCRLKLRGAKRRPSSNS 291
           D NV  +NP  L   ++    R MA+  C  Y++  +KL    V +     A R   S+ 
Sbjct: 10  DINVANDNPFVLFGGMNVLESRDMAMQVCEKYVEVTNKLGVPYVFKASFDKANR---SSI 66

Query: 292 HYFTRTGQTKQNVLFRHVK 348
           H +   G  +   +F+ +K
Sbjct: 67  HSYRGPGMEEGLKIFQELK 85

>TIP1_SCHPO (P79065) Tip elongation protein 1 (Protein noc1)|
          Length = 461

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 168 PSKSHGCDRLPKLHPV*RQTARLGGLQVETSRSK 269
           P +  G + LP+ HP  RQT     +++E  R K
Sbjct: 306 PKRGKGSNDLPENHPQRRQTLEFYEIEIEVLREK 339

>IF38_CAEEL (O02328) Probable eukaryotic translation initiation factor 3|
           subunit 8 (eIF3 p110) (eIF3c)
          Length = 898

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -2

Query: 293 CEFELGRRFAPRSFNLQTSQPCSLSL 216
           CEFE+ RR   RSF+ Q  Q    SL
Sbjct: 658 CEFEMRRRMLSRSFHYQLKQSEKASL 683

>HBA_RAT (P01946) Hemoglobin alpha-1/2 subunit (Hemoglobin alpha-1/2 chain)|
           (Alpha-1/2-globin)
          Length = 141

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 228 QFVSRLDVVWAACHSHGSWTAKMHSSL 148
           +F+S   +V  ACH  G +T  MH+SL
Sbjct: 99  KFLSHCLLVTLACHHPGDFTPAMHASL 125


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,087,825
Number of Sequences: 219361
Number of extensions: 939657
Number of successful extensions: 2466
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2466
length of database: 80,573,946
effective HSP length: 93
effective length of database: 60,173,373
effective search space used: 1444160952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)