Clone Name | rbasd26b09 |
---|---|
Clone Library Name | barley_pub |
>RPOA_PINKO (Q85X01) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase alpha subunit) (RNA polymerase alpha subunit) Length = 335 Score = 30.4 bits (67), Expect = 1.1 Identities = 11/29 (37%), Positives = 18/29 (62%) Frame = +1 Query: 259 RGAKRRPSSNSHYFTRTGQTKQNVLFRHV 345 +G+ P SH T TG+TK+ + F+H+ Sbjct: 244 KGSNMLPFPLSHVLTDTGETKEKIAFKHI 272
>R23A2_CAEEL (Q20647) 60S ribosomal protein L23a 2| Length = 146 Score = 29.3 bits (64), Expect = 2.5 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 4/41 (9%) Frame = +1 Query: 139 QGLQTAVHFSRPRAMAVTGCPNYIQ----SRDKLHGWEVCR 249 + ++T+VHF RP+ + P Y + +RDKL + V + Sbjct: 28 KNVRTSVHFRRPKTLVTARAPRYARKSAPARDKLDSFAVIK 68
>XYLB_BUTFI (P45982) Xylosidase/arabinosidase [Includes: Beta-xylosidase (EC| 3.2.1.37) (1,4-beta-D-xylan xylohydrolase) (Xylan 1,4-beta-xylosidase); Alpha-N-arabinofuranosidase (EC 3.2.1.55) (Arabinosidase)] Length = 517 Score = 28.5 bits (62), Expect = 4.3 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%) Frame = +1 Query: 169 RPRAMAVTGCPNYIQSRDKLHGWEV-CRLKLRGAK 270 RP A+ TG P+Y+ R K H + C LK AK Sbjct: 359 RPEAIENTGNPSYLGIRQKTHSFRASCGLKFTPAK 393
>TMEM1_HUMAN (P48553) Transmembrane protein 1 (Epilepsy holoprosencephaly| candidate 1 protein) (EHOC-1) (GT334 protein) Length = 1259 Score = 28.5 bits (62), Expect = 4.3 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 9/60 (15%) Frame = +1 Query: 61 QTHRKGKKKEYT--CVITYDHNVQEENPQGLQT-------AVHFSRPRAMAVTGCPNYIQ 213 + HRK K K+ T C++T DH V + P + + +V F ++ +G Y+Q Sbjct: 902 EPHRKHKDKQRTGRCMVTTDHKVSIDCPWSIYSTVIALTFSVPFRTTHSLLSSGTRKYVQ 961
>SWR1_YARLI (Q6CA87) Helicase SWR1 (EC 3.6.1.-)| Length = 1772 Score = 28.1 bits (61), Expect = 5.6 Identities = 11/41 (26%), Positives = 23/41 (56%) Frame = +1 Query: 79 KKKEYTCVITYDHNVQEENPQGLQTAVHFSRPRAMAVTGCP 201 +K+ + ++ HN++ Q Q+ +HF+ R + +TG P Sbjct: 1028 RKRWHYMILDEAHNIKNFRSQRWQSLLHFNTVRRLLLTGTP 1068
>BPA1_HUMAN (Q03001) Bullous pemphigoid antigen 1 isoforms 1/2/3/4/5/8 (230 kDa| bullous pemphigoid antigen) (BPA) (Hemidesmosomal plaque protein) (Dystonia musculorum protein) (Dystonin) (Fragment) Length = 3214 Score = 27.7 bits (60), Expect = 7.3 Identities = 15/42 (35%), Positives = 21/42 (50%) Frame = +1 Query: 46 LHMYTQTHRKGKKKEYTCVITYDHNVQEENPQGLQTAVHFSR 171 L + + H KGK + IT H V E+N Q L + +H R Sbjct: 2036 LELESLNHEKGKLQREVDRITRAHAVAEKNIQHLNSQIHSFR 2077
>YEB6_YEAST (P39997) Hypothetical 57.4 kDa protein in PMP2-VAC8 intergenic| region Length = 493 Score = 27.7 bits (60), Expect = 7.3 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 2/43 (4%) Frame = -1 Query: 279 WTTFCSSKFQPANLPAVQFVSRLDVVW--AACHSHGSWTAKMH 157 W F SS+F+P NL A + + D +W S G + H Sbjct: 151 WDNFTSSEFRPNNLDARIWSNTADPIWQLLQTESQGEYKVATH 193
>DALY_DROME (Q24114) Division abnormally delayed protein precursor (Dally| protein) Length = 626 Score = 27.7 bits (60), Expect = 7.3 Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 12/81 (14%) Frame = +1 Query: 115 HNVQEENPQG---------LQTAVHFSRPRAMAVTGCPNYIQSRDKLHGWEV---CRLKL 258 HN E +P G L +VH S A+ + D L+G ++ C+L L Sbjct: 247 HNFDEMHPFGDIPQQVQSNLGKSVHMSNVFMNALLQAAEVLSEADALYGEQLTDTCKLHL 306 Query: 259 RGAKRRPSSNSHYFTRTGQTK 321 P+ N H+ + +TK Sbjct: 307 LKMHYCPNCNGHHSSSRSETK 327
>ZN490_HUMAN (Q9ULM2) Zinc finger protein 490| Length = 529 Score = 27.3 bits (59), Expect = 9.5 Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 3/42 (7%) Frame = +1 Query: 196 CPNYIQSRDKLHGWE---VCRLKLRGAKRRPSSNSHYFTRTG 312 CP Y++S +K H E VCR R S H T TG Sbjct: 317 CPTYLRSHEKTHTGEKPFVCRECGRAFFSHSSLRKHVKTHTG 358
>NOX5_HUMAN (Q96PH1) NADPH oxidase 5 (EC 1.6.3.-)| Length = 765 Score = 27.3 bits (59), Expect = 9.5 Identities = 9/23 (39%), Positives = 13/23 (56%) Frame = -1 Query: 210 DVVWAACHSHGSWTAKMHSSLKA 142 D +W S G WT +++ S KA Sbjct: 502 DTIWLHIRSQGQWTNRLYESFKA 524
>KDSA_MANSM (Q65TB4) 2-dehydro-3-deoxyphosphooctonate aldolase (EC 2.5.1.55)| (Phospho-2-dehydro-3-deoxyoctonate aldolase) (3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase) (KDO-8-phosphate synthetase) (KDO 8-P synthase) (KDOPS) Length = 284 Score = 27.3 bits (59), Expect = 9.5 Identities = 21/79 (26%), Positives = 35/79 (44%) Frame = +1 Query: 112 DHNVQEENPQGLQTAVHFSRPRAMAVTGCPNYIQSRDKLHGWEVCRLKLRGAKRRPSSNS 291 D NV +NP L ++ R MA+ C Y++ +KL V + A R S+ Sbjct: 10 DINVANDNPFVLFGGMNVLESRDMAMQVCEKYVEVTNKLGVPYVFKASFDKANR---SSI 66 Query: 292 HYFTRTGQTKQNVLFRHVK 348 H + G + +F+ +K Sbjct: 67 HSYRGPGMEEGLKIFQELK 85
>TIP1_SCHPO (P79065) Tip elongation protein 1 (Protein noc1)| Length = 461 Score = 27.3 bits (59), Expect = 9.5 Identities = 12/34 (35%), Positives = 18/34 (52%) Frame = +3 Query: 168 PSKSHGCDRLPKLHPV*RQTARLGGLQVETSRSK 269 P + G + LP+ HP RQT +++E R K Sbjct: 306 PKRGKGSNDLPENHPQRRQTLEFYEIEIEVLREK 339
>IF38_CAEEL (O02328) Probable eukaryotic translation initiation factor 3| subunit 8 (eIF3 p110) (eIF3c) Length = 898 Score = 27.3 bits (59), Expect = 9.5 Identities = 13/26 (50%), Positives = 15/26 (57%) Frame = -2 Query: 293 CEFELGRRFAPRSFNLQTSQPCSLSL 216 CEFE+ RR RSF+ Q Q SL Sbjct: 658 CEFEMRRRMLSRSFHYQLKQSEKASL 683
>HBA_RAT (P01946) Hemoglobin alpha-1/2 subunit (Hemoglobin alpha-1/2 chain)| (Alpha-1/2-globin) Length = 141 Score = 27.3 bits (59), Expect = 9.5 Identities = 12/27 (44%), Positives = 17/27 (62%) Frame = -1 Query: 228 QFVSRLDVVWAACHSHGSWTAKMHSSL 148 +F+S +V ACH G +T MH+SL Sbjct: 99 KFLSHCLLVTLACHHPGDFTPAMHASL 125 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 50,087,825 Number of Sequences: 219361 Number of extensions: 939657 Number of successful extensions: 2466 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 2415 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2466 length of database: 80,573,946 effective HSP length: 93 effective length of database: 60,173,373 effective search space used: 1444160952 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)