ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd25m09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 54 4e-04
2dbj|AK069200.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 4e-04
3dbj|AK062564.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 4e-04
4gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 54 4e-04
5emb|AL731747.2|CNS08C7W Oryza sativa chromosome 12, . BAC OSJNBa... 54 4e-04
6dbj|AK067367.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.090
7emb|CT033765.2| Medicago truncatula chromosome 5 clone mth2-105d... 42 1.4
8gb|AY702650.1| Tomato yellow leaf curl Sardinia virus strain Mur... 40 5.5
9gb|AC135079.9| Mus musculus chromosome 15, clone RP24-439P7, com... 40 5.5
10gb|AC186553.1| Pan troglodytes chromosome 6 clone CH251-664D19, ... 40 5.5
11gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 5.5
12gb|AC183547.2| Pan troglodytes BAC clone CH251-213F19 from chrom... 40 5.5
13ref|XM_389542.1| Gibberella zeae PH-1 chromosome 4 hypothetical ... 40 5.5
14emb|AL450324.10| Human DNA sequence from clone RP11-307F22 on ch... 40 5.5
15gb|AC183106.3| Pan troglodytes BAC clone CH251-522A15 from chrom... 40 5.5
16gb|AC182636.3| Pan troglodytes BAC clone CH251-519F5 from chromo... 40 5.5
17dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
18gb|AY193715.1| Tomato yellow leaf curl virus strain Almeria inte... 40 5.5
19gb|AC091532.13| Oryza sativa chromosome 3 BAC OSJNBa0078A17 geno... 40 5.5
20gb|AC104038.9| Homo sapiens chromosome 11, clone RP11-746C23, co... 40 5.5
21emb|Z97200.1|HS79C4 Human DNA sequence from clone RP1-79C4 on ch... 40 5.5 
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 57/67 (85%)
 Strand = Plus / Minus

                                                                            
Query: 56       ttcctaattaggtagagttgcttgaagagcctttcgcagacaggacgtgactgatcaaat 115
                |||||| ||||||||||||||| ||| ||||||| |||||||| |  || || || ||||
Sbjct: 21697551 ttcctagttaggtagagttgctcgaaaagccttttgcagacagaatatggctcatgaaat 21697492

                       
Query: 116      tactaca 122
                |||||||
Sbjct: 21697491 tactaca 21697485



 Score = 46.1 bits (23), Expect = 0.090
 Identities = 98/121 (80%), Gaps = 4/121 (3%)
 Strand = Plus / Minus

                                                                            
Query: 142      taagatctggtcgacaaaaattactgctgacctgtggttatgcttgcttctgcagctcca 201
                ||||||||||| ||| ||| |||||||||||||||||   ||||||||||   |||||| 
Sbjct: 21697473 taagatctggttgacgaaa-ttactgctgacctgtggccgtgcttgcttc---agctcct 21697418

                                                                            
Query: 202      gtagcagaaacctctgtggttttctcatccggggctgctacttcctcagttaccacagca 261
                | | ||| ||| ||||  |||||||||   | |||||||||||| |||| |||| |||||
Sbjct: 21697417 gcaacagcaacatctgcagttttctcacttgaggctgctacttcttcaggtaccgcagca 21697358

                 
Query: 262      g 262
                |
Sbjct: 21697357 g 21697357



 Score = 46.1 bits (23), Expect = 0.090
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                               
Query: 260      cagactcactacttgcagttgcaggaacctc 290
                |||||||||||||||||||| | ||||||||
Sbjct: 21697344 cagactcactacttgcagttactggaacctc 21697314
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>dbj|AK069200.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023009A08, full
            insert sequence
          Length = 2554

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 57/67 (85%)
 Strand = Plus / Minus

                                                                        
Query: 56   ttcctaattaggtagagttgcttgaagagcctttcgcagacaggacgtgactgatcaaat 115
            |||||| ||||||||||||||| ||| ||||||| |||||||| |  || || || ||||
Sbjct: 2418 ttcctagttaggtagagttgctcgaaaagccttttgcagacagaatatggctcatgaaat 2359

                   
Query: 116  tactaca 122
            |||||||
Sbjct: 2358 tactaca 2352



 Score = 46.1 bits (23), Expect = 0.090
 Identities = 98/121 (80%), Gaps = 4/121 (3%)
 Strand = Plus / Minus

                                                                        
Query: 142  taagatctggtcgacaaaaattactgctgacctgtggttatgcttgcttctgcagctcca 201
            ||||||||||| ||| ||| |||||||||||||||||   ||||||||||   |||||| 
Sbjct: 2340 taagatctggttgacgaaa-ttactgctgacctgtggccgtgcttgcttc---agctcct 2285

                                                                        
Query: 202  gtagcagaaacctctgtggttttctcatccggggctgctacttcctcagttaccacagca 261
            | | ||| ||| ||||  |||||||||   | |||||||||||| |||| |||| |||||
Sbjct: 2284 gcaacagcaacatctgcagttttctcacttgaggctgctacttcttcaggtaccgcagca 2225

             
Query: 262  g 262
            |
Sbjct: 2224 g 2224



 Score = 46.1 bits (23), Expect = 0.090
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 260  cagactcactacttgcagttgcaggaacctc 290
            |||||||||||||||||||| | ||||||||
Sbjct: 2211 cagactcactacttgcagttactggaacctc 2181
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>dbj|AK062564.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-045-F04, full
            insert sequence
          Length = 1800

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 57/67 (85%)
 Strand = Plus / Minus

                                                                        
Query: 56   ttcctaattaggtagagttgcttgaagagcctttcgcagacaggacgtgactgatcaaat 115
            |||||| ||||||||||||||| ||| ||||||| |||||||| |  || || || ||||
Sbjct: 1646 ttcctagttaggtagagttgctcgaaaagccttttgcagacagaatatggctcatgaaat 1587

                   
Query: 116  tactaca 122
            |||||||
Sbjct: 1586 tactaca 1580



 Score = 46.1 bits (23), Expect = 0.090
 Identities = 98/121 (80%), Gaps = 4/121 (3%)
 Strand = Plus / Minus

                                                                        
Query: 142  taagatctggtcgacaaaaattactgctgacctgtggttatgcttgcttctgcagctcca 201
            ||||||||||| ||| ||| |||||||||||||||||   ||||||||||   |||||| 
Sbjct: 1568 taagatctggttgacgaaa-ttactgctgacctgtggccgtgcttgcttc---agctcct 1513

                                                                        
Query: 202  gtagcagaaacctctgtggttttctcatccggggctgctacttcctcagttaccacagca 261
            | | ||| ||| ||||  |||||||||   | |||||||||||| |||| |||| |||||
Sbjct: 1512 gcaacagcaacatctgcagttttctcacttgaggctgctacttcttcaggtaccgcagca 1453

             
Query: 262  g 262
            |
Sbjct: 1452 g 1452



 Score = 46.1 bits (23), Expect = 0.090
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 260  cagactcactacttgcagttgcaggaacctc 290
            |||||||||||||||||||| | ||||||||
Sbjct: 1439 cagactcactacttgcagttactggaacctc 1409
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 57/67 (85%)
 Strand = Plus / Minus

                                                                            
Query: 56       ttcctaattaggtagagttgcttgaagagcctttcgcagacaggacgtgactgatcaaat 115
                |||||| ||||||||||||||| ||| ||||||| |||||||| |  || || || ||||
Sbjct: 21625896 ttcctagttaggtagagttgctcgaaaagccttttgcagacagaatatggctcatgaaat 21625837

                       
Query: 116      tactaca 122
                |||||||
Sbjct: 21625836 tactaca 21625830



 Score = 46.1 bits (23), Expect = 0.090
 Identities = 98/121 (80%), Gaps = 4/121 (3%)
 Strand = Plus / Minus

                                                                            
Query: 142      taagatctggtcgacaaaaattactgctgacctgtggttatgcttgcttctgcagctcca 201
                ||||||||||| ||| ||| |||||||||||||||||   ||||||||||   |||||| 
Sbjct: 21625818 taagatctggttgacgaaa-ttactgctgacctgtggccgtgcttgcttc---agctcct 21625763

                                                                            
Query: 202      gtagcagaaacctctgtggttttctcatccggggctgctacttcctcagttaccacagca 261
                | | ||| ||| ||||  |||||||||   | |||||||||||| |||| |||| |||||
Sbjct: 21625762 gcaacagcaacatctgcagttttctcacttgaggctgctacttcttcaggtaccgcagca 21625703

                 
Query: 262      g 262
                |
Sbjct: 21625702 g 21625702



 Score = 46.1 bits (23), Expect = 0.090
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                               
Query: 260      cagactcactacttgcagttgcaggaacctc 290
                |||||||||||||||||||| | ||||||||
Sbjct: 21625689 cagactcactacttgcagttactggaacctc 21625659
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>emb|AL731747.2|CNS08C7W Oryza sativa chromosome 12, . BAC OSJNBa0024C08 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 186030

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                         
Query: 56     ttcctaattaggtagagttgcttgaagagcctttcgcagacag 98
              |||||| ||||||||||||||| ||| ||||||| ||||||||
Sbjct: 115000 ttcctagttaggtagagttgctcgaaaagccttttgcagacag 115042



 Score = 46.1 bits (23), Expect = 0.090
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                             
Query: 260    cagactcactacttgcagttgcaggaacctc 290
              |||||||||||||||||||| | ||||||||
Sbjct: 115207 cagactcactacttgcagttactggaacctc 115237



 Score = 46.1 bits (23), Expect = 0.090
 Identities = 98/121 (80%), Gaps = 4/121 (3%)
 Strand = Plus / Plus

                                                                          
Query: 142    taagatctggtcgacaaaaattactgctgacctgtggttatgcttgcttctgcagctcca 201
              ||||||||||| ||| ||| |||||||||||||||||   ||||||||||   |||||| 
Sbjct: 115078 taagatctggttgacgaaa-ttactgctgacctgtggccgtgcttgcttc---agctcct 115133

                                                                          
Query: 202    gtagcagaaacctctgtggttttctcatccggggctgctacttcctcagttaccacagca 261
              | | ||| ||| ||||  |||||||||   | |||||||||||| |||| |||| |||||
Sbjct: 115134 gcaacagcaacatctgcagttttctcacttgaggctgctacttcttcaggtaccgcagca 115193

               
Query: 262    g 262
              |
Sbjct: 115194 g 115194
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>dbj|AK067367.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013106B18, full
            insert sequence
          Length = 3861

 Score = 46.1 bits (23), Expect = 0.090
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 260  cagactcactacttgcagttgcaggaacctc 290
            |||||||||||||||||||| | ||||||||
Sbjct: 2204 cagactcactacttgcagttactggaacctc 2174
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>emb|CT033765.2| Medicago truncatula chromosome 5 clone mth2-105d20, COMPLETE SEQUENCE
          Length = 131814

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 9      aaaaggaagttgcttgaacagttta 33
              |||||||||||||||||||| ||||
Sbjct: 109902 aaaaggaagttgcttgaacatttta 109878
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>gb|AY702650.1| Tomato yellow leaf curl Sardinia virus strain Murcia from Morocco,
           complete genome
          Length = 2777

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 149 tggtcgacaaaaattactgc 168
           ||||||||||||||||||||
Sbjct: 60  tggtcgacaaaaattactgc 41
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>gb|AC135079.9| Mus musculus chromosome 15, clone RP24-439P7, complete sequence
          Length = 155778

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 183   gcttgcttctgcagctccag 202
             ||||||||||||||||||||
Sbjct: 96847 gcttgcttctgcagctccag 96828
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>gb|AC186553.1| Pan troglodytes chromosome 6 clone CH251-664D19, complete sequence
          Length = 214787

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 33     acatgcaatctatcctaatactct 56
              |||||||| |||||||||||||||
Sbjct: 214086 acatgcaacctatcctaatactct 214109
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 123      tatcagggccttttgcagat 142
                ||||||||||||||||||||
Sbjct: 28745820 tatcagggccttttgcagat 28745839
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>gb|AC183547.2| Pan troglodytes BAC clone CH251-213F19 from chromosome 6, complete
             sequence
          Length = 190731

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 33    acatgcaatctatcctaatactct 56
             |||||||| |||||||||||||||
Sbjct: 81874 acatgcaacctatcctaatactct 81851
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>ref|XM_389542.1| Gibberella zeae PH-1 chromosome 4 hypothetical protein (FG09366.1)
            partial mRNA
          Length = 1386

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 287  cctccggcactgattcttctggctcctc 314
            |||||||| ||| |||||||||||||||
Sbjct: 1199 cctccggctctggttcttctggctcctc 1226
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>emb|AL450324.10| Human DNA sequence from clone RP11-307F22 on chromosome 6, complete
              sequence
          Length = 101846

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 33     acatgcaatctatcctaatactct 56
              |||||||| |||||||||||||||
Sbjct: 100127 acatgcaacctatcctaatactct 100104
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>gb|AC183106.3| Pan troglodytes BAC clone CH251-522A15 from chromosome 6, complete
             sequence
          Length = 173865

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 33    acatgcaatctatcctaatactct 56
             |||||||| |||||||||||||||
Sbjct: 42186 acatgcaacctatcctaatactct 42163
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>gb|AC182636.3| Pan troglodytes BAC clone CH251-519F5 from chromosome 6, complete
              sequence
          Length = 197430

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 33     acatgcaatctatcctaatactct 56
              |||||||| |||||||||||||||
Sbjct: 114469 acatgcaacctatcctaatactct 114446
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 123      tatcagggccttttgcagat 142
                ||||||||||||||||||||
Sbjct: 28837144 tatcagggccttttgcagat 28837163
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>gb|AY193715.1| Tomato yellow leaf curl virus strain Almeria intergenic region
          Length = 317

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 149 tggtcgacaaaaattactgc 168
           ||||||||||||||||||||
Sbjct: 240 tggtcgacaaaaattactgc 221
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>gb|AC091532.13| Oryza sativa chromosome 3 BAC OSJNBa0078A17 genomic sequence, complete
             sequence
          Length = 147344

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 123   tatcagggccttttgcagat 142
             ||||||||||||||||||||
Sbjct: 52801 tatcagggccttttgcagat 52820
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>gb|AC104038.9| Homo sapiens chromosome 11, clone RP11-746C23, complete sequence
          Length = 187648

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 321   atcaagaggagtgatttcct 340
             ||||||||||||||||||||
Sbjct: 58785 atcaagaggagtgatttcct 58804
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>emb|Z97200.1|HS79C4 Human DNA sequence from clone RP1-79C4 on chromosome 1q24, complete
             sequence
          Length = 158549

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 194   cagctccagtagcagaaacc 213
             ||||||||||||||||||||
Sbjct: 65416 cagctccagtagcagaaacc 65435


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,124,578
Number of Sequences: 3902068
Number of extensions: 3124578
Number of successful extensions: 59871
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 59747
Number of HSP's gapped (non-prelim): 124
length of query: 413
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 391
effective length of database: 17,147,199,772
effective search space: 6704555110852
effective search space used: 6704555110852
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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