ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd25m06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1NHX7_ARATH (Q9LKW9) Sodium/hydrogen exchanger 7 (Na(+)/H(+) exch... 30 1.9
2PIP2_YEAST (P52960) Peroxisome proliferation transcriptional reg... 30 1.9
3ATP8_PISOC (P25004) ATP synthase protein 8 (EC 3.6.3.14) (ATPase... 30 2.5

>NHX7_ARATH (Q9LKW9) Sodium/hydrogen exchanger 7 (Na(+)/H(+) exchanger 7)|
           (NHE-7) (Protein SALT OVERLY SENSITIVE 1)
          Length = 1146

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -1

Query: 338 PPTFCETIVHPKGEVVELIVMTAYKIGA 255
           PP FCE + H K E ++L  +T YK G+
Sbjct: 746 PPAFCEPLKHSKKEPMKLRGVTLYKEGS 773



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>PIP2_YEAST (P52960) Peroxisome proliferation transcriptional regulator|
           (Oleate-activated transcription factor 2)
          Length = 996

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = -1

Query: 404 CKCLSLVTA*CLLGFRCDFSFSPPTFCETIVHPKGEVVELIVMTAYKIG 258
           C C +  T  CLL   C F FSP      +  P   ++ L+++    IG
Sbjct: 390 CACANENTISCLLYIWCAFVFSPTEGDFLLEQPSDVIINLVILIGTSIG 438



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>ATP8_PISOC (P25004) ATP synthase protein 8 (EC 3.6.3.14) (ATPase subunit 8)|
           (A6L)
          Length = 55

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +3

Query: 201 LAWFF--VVLLLMLLTSFNHRAYFIGCHDYQLNNFSFWMY 314
           LAWFF  +V+ ++L  +F    Y    H  +LN F+ W++
Sbjct: 15  LAWFFLFIVVTILLKINFPSTNYITVTHPQKLNIFNNWLW 54


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,144,886
Number of Sequences: 219361
Number of extensions: 1118792
Number of successful extensions: 2082
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2063
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2081
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2453576370
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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