ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd26b04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1IPO9_HUMAN (Q96P70) Importin-9 (Imp9) (Ran-binding protein 9) (R... 29 3.9
2IPO9_MOUSE (Q91YE6) Importin-9 (Importin 9a) (Imp9a) (Importin 9... 28 6.7
3RL4_MYCPU (Q98PY2) 50S ribosomal protein L4 28 8.7

>IPO9_HUMAN (Q96P70) Importin-9 (Imp9) (Ran-binding protein 9) (RanbP9)|
          Length = 1040

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 184 VNQPINELCILC*VNPPFTRSFNLKFC 104
           +N  +  LCI+C V+P FT S   K C
Sbjct: 579 LNLVMETLCIVCTVDPEFTASMESKIC 605



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>IPO9_MOUSE (Q91YE6) Importin-9 (Importin 9a) (Imp9a) (Importin 9b) (Imp9b)|
           (Ran-binding protein 9) (RanBP9)
          Length = 1040

 Score = 28.1 bits (61), Expect = 6.7
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 184 VNQPINELCILC*VNPPFTRSFNLKFC 104
           +N  +  LCI+C V+P FT S   K C
Sbjct: 579 LNLVMETLCIVCTVDPEFTASVENKIC 605



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>RL4_MYCPU (Q98PY2) 50S ribosomal protein L4|
          Length = 292

 Score = 27.7 bits (60), Expect = 8.7
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 50  DCMLYGSGRRXTAQHKIGAKLEVKGTGK 133
           DC+L     R    HK+  + EV GTGK
Sbjct: 120 DCILSERASRRQGTHKVKNRAEVSGTGK 147


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,249,275
Number of Sequences: 219361
Number of extensions: 358433
Number of successful extensions: 663
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 663
length of database: 80,573,946
effective HSP length: 39
effective length of database: 72,018,867
effective search space used: 1728452808
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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