ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd26b02 |
|---|---|
| Clone Library Name | barley_pub |
>ILV5_ARATH (Q05758) Ketol-acid reductoisomerase, chloroplast precursor (EC| 1.1.1.86) (Acetohydroxy-acid reductoisomerase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 591 Score = 249 bits (636), Expect = 4e-66 Identities = 123/138 (89%), Positives = 129/138 (93%) Frame = -3 Query: 553 PLHPFTXGVYVALMMAQIXVLRKKGHSYSEIINESVIESVDSLNPFMHARGVAFMVDNCS 374 PL+PFT GVYVALMMAQI +LRKKGHSYSEIINESVIESVDSLNPFMHARGV+FMVDNCS Sbjct: 453 PLYPFTAGVYVALMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCS 512 Query: 373 TTARLGSRKWAPRFDYILTQQAFVTVDKDAPINQDLISNFMSDPVHGAIEVCAELRPTVD 194 TTARLGSRKWAPRFDYILTQQA V VD A IN+DLISNF SDPVHGAIEVCA+LRPTVD Sbjct: 513 TTARLGSRKWAPRFDYILTQQALVAVDSGAAINRDLISNFFSDPVHGAIEVCAQLRPTVD 572 Query: 193 ISVTADADFVRPELRQSA 140 ISV ADADFVRPELRQS+ Sbjct: 573 ISVPADADFVRPELRQSS 590
>ILV5_PEA (O82043) Ketol-acid reductoisomerase, chloroplast precursor (EC| 1.1.1.86) (Acetohydroxy-acid reductoisomerase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 581 Score = 246 bits (628), Expect = 3e-65 Identities = 121/136 (88%), Positives = 128/136 (94%) Frame = -3 Query: 553 PLHPFTXGVYVALMMAQIXVLRKKGHSYSEIINESVIESVDSLNPFMHARGVAFMVDNCS 374 PL+PFT GV+VA+MMAQI VLRKKGHSYSEIINESVIESVDSLNPFMHARGV+FMVDNCS Sbjct: 443 PLYPFTAGVFVAMMMAQIEVLRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCS 502 Query: 373 TTARLGSRKWAPRFDYILTQQAFVTVDKDAPINQDLISNFMSDPVHGAIEVCAELRPTVD 194 TTARLGSRKWAPRFDYILTQQA V VD APINQDLISNF+SDPVHGAI+VCAELRPT+D Sbjct: 503 TTARLGSRKWAPRFDYILTQQALVAVDSGAPINQDLISNFVSDPVHGAIQVCAELRPTLD 562 Query: 193 ISVTADADFVRPELRQ 146 ISV A ADFVRPELRQ Sbjct: 563 ISVPAAADFVRPELRQ 578
>ILV5_SPIOL (Q01292) Ketol-acid reductoisomerase, chloroplast precursor (EC| 1.1.1.86) (Acetohydroxy-acid reductoisomerase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 595 Score = 245 bits (626), Expect = 5e-65 Identities = 120/137 (87%), Positives = 129/137 (94%) Frame = -3 Query: 553 PLHPFTXGVYVALMMAQIXVLRKKGHSYSEIINESVIESVDSLNPFMHARGVAFMVDNCS 374 PL+PFT GVYVALMMAQI +LRKKGHSYSEIINESVIE+VDSLNPFMHARGV+FMVDNCS Sbjct: 459 PLYPFTAGVYVALMMAQIEILRKKGHSYSEIINESVIEAVDSLNPFMHARGVSFMVDNCS 518 Query: 373 TTARLGSRKWAPRFDYILTQQAFVTVDKDAPINQDLISNFMSDPVHGAIEVCAELRPTVD 194 TTARLGSRKWAPRFDYIL+QQA V VD APINQDLISNF+SDPVH AI VCA+LRP+VD Sbjct: 519 TTARLGSRKWAPRFDYILSQQALVAVDNGAPINQDLISNFLSDPVHEAIGVCAQLRPSVD 578 Query: 193 ISVTADADFVRPELRQS 143 ISVTADADFVRPELRQ+ Sbjct: 579 ISVTADADFVRPELRQA 595
>ILV5_NEUCR (P38674) Ketol-acid reductoisomerase, mitochondrial precursor (EC| 1.1.1.86) (Acetohydroxy-acid reductoisomerase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 402 Score = 65.5 bits (158), Expect = 1e-10 Identities = 31/62 (50%), Positives = 42/62 (67%) Frame = -3 Query: 517 LMMAQIXVLRKKGHSYSEIINESVIESVDSLNPFMHARGVAFMVDNCSTTARLGSRKWAP 338 + +AQ VLR++GHS SE NE+V E+ SL P + A G+ +M D CSTTAR G+ W P Sbjct: 276 MFLAQYEVLRERGHSPSEAFNETVEEATQSLYPLIGAHGMDWMFDACSTTARRGAIDWTP 335 Query: 337 RF 332 +F Sbjct: 336 KF 337
>ILV5_SCHPO (P78827) Probable ketol-acid reductoisomerase, mitochondrial| precursor (EC 1.1.1.86) (Acetohydroxy-acid reductoisomerase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 404 Score = 61.2 bits (147), Expect = 2e-09 Identities = 30/62 (48%), Positives = 40/62 (64%) Frame = -3 Query: 517 LMMAQIXVLRKKGHSYSEIINESVIESVDSLNPFMHARGVAFMVDNCSTTARLGSRKWAP 338 L +AQ VLR++GHS +E NE+V E+ SL P + G+ +M CSTTAR G+ W P Sbjct: 277 LFLAQYQVLRERGHSPAEAFNETVEEATQSLYPLIGKYGLDYMFAACSTTARRGAIDWTP 336 Query: 337 RF 332 RF Sbjct: 337 RF 338
>ILV5_YEAST (P06168) Ketol-acid reductoisomerase, mitochondrial precursor (EC| 1.1.1.86) (Acetohydroxy-acid reductoisomerase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 395 Score = 60.5 bits (145), Expect = 3e-09 Identities = 30/62 (48%), Positives = 39/62 (62%) Frame = -3 Query: 517 LMMAQIXVLRKKGHSYSEIINESVIESVDSLNPFMHARGVAFMVDNCSTTARLGSRKWAP 338 + +AQ VLR+ GHS SE NE+V E+ SL P + G+ +M D CSTTAR G+ W P Sbjct: 270 MFLAQYDVLRENGHSPSEAFNETVEEATQSLYPLIGKYGMDYMYDACSTTARRGALDWYP 329 Query: 337 RF 332 F Sbjct: 330 IF 331
>SYS_COREF (Q8FLY5) Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase)| (SerRS) Length = 419 Score = 30.8 bits (68), Expect = 2.7 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 4/55 (7%) Frame = +2 Query: 182 RHRDVDGGPQLGADLDGAVDGVRHEVA---DEVLVDGRILVHRHKR-LLGQDVVE 334 R+RD +G PQ+ A L+G + R VA + DG ++V R +G+DV+E Sbjct: 362 RYRDENGKPQIAATLNGTLATTRWLVAILENNQQADGSVIVPEALRPFVGKDVLE 416
>ICAA_STAAW (Q8NUI7) Biofilm PIA synthesis N-glycosyltransferase icaA (EC| 2.4.-.-) (Intercellular adhesion protein A) Length = 412 Score = 30.4 bits (67), Expect = 3.5 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = -3 Query: 334 FDYILTQQAFVTVDKDAPINQDLISNFMSDPVHGAI 227 +DY++ A VD+DAP +I NF DP GA+ Sbjct: 127 YDYVMCLDADTIVDQDAPYY--MIENFKHDPKLGAV 160
>ICAA_STAAU (Q9RQP9) Biofilm PIA synthesis N-glycosyltransferase icaA (EC| 2.4.-.-) (Intercellular adhesion protein A) Length = 412 Score = 30.4 bits (67), Expect = 3.5 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = -3 Query: 334 FDYILTQQAFVTVDKDAPINQDLISNFMSDPVHGAI 227 +DY++ A VD+DAP +I NF DP GA+ Sbjct: 127 YDYVMCLDADTIVDQDAPYY--MIENFKHDPKLGAV 160
>ICAA_STAAS (Q6G608) Biofilm PIA synthesis N-glycosyltransferase icaA (EC| 2.4.-.-) (Intercellular adhesion protein A) Length = 412 Score = 30.4 bits (67), Expect = 3.5 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = -3 Query: 334 FDYILTQQAFVTVDKDAPINQDLISNFMSDPVHGAI 227 +DY++ A VD+DAP +I NF DP GA+ Sbjct: 127 YDYVMCLDADTIVDQDAPYY--MIENFKHDPKLGAV 160
>ICAA_STAAR (Q6GDD8) Biofilm PIA synthesis N-glycosyltransferase icaA (EC| 2.4.-.-) (Intercellular adhesion protein A) Length = 412 Score = 30.4 bits (67), Expect = 3.5 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = -3 Query: 334 FDYILTQQAFVTVDKDAPINQDLISNFMSDPVHGAI 227 +DY++ A VD+DAP +I NF DP GA+ Sbjct: 127 YDYVMCLDADTIVDQDAPYY--MIENFKHDPKLGAV 160
>ICAA_STAAN (Q7A351) Biofilm PIA synthesis N-glycosyltransferase icaA (EC| 2.4.-.-) (Intercellular adhesion protein A) Length = 412 Score = 30.4 bits (67), Expect = 3.5 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = -3 Query: 334 FDYILTQQAFVTVDKDAPINQDLISNFMSDPVHGAI 227 +DY++ A VD+DAP +I NF DP GA+ Sbjct: 127 YDYVMCLDADTIVDQDAPYY--MIENFKHDPKLGAV 160
>ICAA_STAAM (Q99QX3) Biofilm PIA synthesis N-glycosyltransferase icaA (EC| 2.4.-.-) (Intercellular adhesion protein A) Length = 412 Score = 30.4 bits (67), Expect = 3.5 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = -3 Query: 334 FDYILTQQAFVTVDKDAPINQDLISNFMSDPVHGAI 227 +DY++ A VD+DAP +I NF DP GA+ Sbjct: 127 YDYVMCLDADTIVDQDAPYY--MIENFKHDPKLGAV 160
>ICAA_STAAC (Q5HCN1) Biofilm PIA synthesis N-glycosyltransferase icaA (EC| 2.4.-.-) (Intercellular adhesion protein A) Length = 412 Score = 30.4 bits (67), Expect = 3.5 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = -3 Query: 334 FDYILTQQAFVTVDKDAPINQDLISNFMSDPVHGAI 227 +DY++ A VD+DAP +I NF DP GA+ Sbjct: 127 YDYVMCLDADTIVDQDAPYY--MIENFKHDPKLGAV 160
>FIT3_YEAST (Q08907) Facilitator of iron transport 3 precursor| Length = 204 Score = 29.3 bits (64), Expect = 7.9 Identities = 17/74 (22%), Positives = 38/74 (51%) Frame = +3 Query: 81 YITVHELSTHQKTTLQTRI*ADCRSSGRTKSASAVTEMSTVGLSSAQTSMAPWTGSDMKL 260 ++ E S++ + T ++ +S + +A+ E S+ SS+ ++ +TG+ + Sbjct: 128 FVWTGEGSSNTWSPSSTSTSSEAATSSASTTATTTAETSSSATSSSTAELSSYTGAADAI 187 Query: 261 LMRSWLMGASLSTV 302 + LMGA+L+ V Sbjct: 188 TAGTGLMGAALAAV 201
>CS007_MOUSE (Q6ZPZ3) Zinc finger CCCH-type domain-containing protein C19orf7| homolog Length = 1304 Score = 29.3 bits (64), Expect = 7.9 Identities = 14/35 (40%), Positives = 17/35 (48%) Frame = +2 Query: 104 HPSKNNSSDPNLGRLPELRTHEVSIGRHRDVDGGP 208 HP+ + SDP L R P L H + G D GP Sbjct: 862 HPTGSRLSDPRLSRDPRLSRHAETSGGSGPGDSGP 896 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 71,384,060 Number of Sequences: 219361 Number of extensions: 1368679 Number of successful extensions: 4322 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 4185 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4321 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4545742239 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
