Clone Name | rbasd26a23 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | ref|NM_196545.1| Oryza sativa (japonica cultivar-group) unknown ... | 72 | 7e-10 | 2 | dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... | 72 | 7e-10 | 3 | gb|AC027662.2|AC027662 Oryza sativa (japonica cultivar-group) ch... | 72 | 7e-10 | 4 | gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... | 72 | 7e-10 | 5 | emb|AJ303349.1|CRU303349 Capsella rubella ORF1, ORF2, ORF3, ORF4... | 44 | 0.17 |
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>ref|NM_196545.1| Oryza sativa (japonica cultivar-group) unknown protein (OSJNBa0053G13.19), mRNA Length = 3840 Score = 71.9 bits (36), Expect = 7e-10 Identities = 75/89 (84%) Strand = Plus / Minus Query: 50 ctgccagagacnctgtacccccggataagggcgttgtatgtgaaaacattgggcttccag 109 ||||| || || |||||||||| ||||| ||||| ||||||||||| || ||||||||| Sbjct: 3554 ctgccggaaacactgtaccccctaataagagcgttatatgtgaaaacgttaggcttccag 3495 Query: 110 cctttcnccagcanttcttcatacatttt 138 |||||| ||| | |||||||||||||| Sbjct: 3494 cctttcgtcagtagctcttcatacatttt 3466
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 71.9 bits (36), Expect = 7e-10 Identities = 75/89 (84%) Strand = Plus / Plus Query: 50 ctgccagagacnctgtacccccggataagggcgttgtatgtgaaaacattgggcttccag 109 ||||| || || |||||||||| ||||| ||||| ||||||||||| || ||||||||| Sbjct: 14383237 ctgccggaaacactgtaccccctaataagagcgttatatgtgaaaacgttaggcttccag 14383296 Query: 110 cctttcnccagcanttcttcatacatttt 138 |||||| ||| | |||||||||||||| Sbjct: 14383297 cctttcgtcagtagctcttcatacatttt 14383325
>gb|AC027662.2|AC027662 Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0053G13, complete sequence Length = 138245 Score = 71.9 bits (36), Expect = 7e-10 Identities = 75/89 (84%) Strand = Plus / Plus Query: 50 ctgccagagacnctgtacccccggataagggcgttgtatgtgaaaacattgggcttccag 109 ||||| || || |||||||||| ||||| ||||| ||||||||||| || ||||||||| Sbjct: 130512 ctgccggaaacactgtaccccctaataagagcgttatatgtgaaaacgttaggcttccag 130571 Query: 110 cctttcnccagcanttcttcatacatttt 138 |||||| ||| | |||||||||||||| Sbjct: 130572 cctttcgtcagtagctcttcatacatttt 130600
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 71.9 bits (36), Expect = 7e-10 Identities = 75/89 (84%) Strand = Plus / Plus Query: 50 ctgccagagacnctgtacccccggataagggcgttgtatgtgaaaacattgggcttccag 109 ||||| || || |||||||||| ||||| ||||| ||||||||||| || ||||||||| Sbjct: 14391479 ctgccggaaacactgtaccccctaataagagcgttatatgtgaaaacgttaggcttccag 14391538 Query: 110 cctttcnccagcanttcttcatacatttt 138 |||||| ||| | |||||||||||||| Sbjct: 14391539 cctttcgtcagtagctcttcatacatttt 14391567
>emb|AJ303349.1|CRU303349 Capsella rubella ORF1, ORF2, ORF3, ORF4, ORF5 and ORF6 (partial) Length = 27056 Score = 44.1 bits (22), Expect = 0.17 Identities = 31/34 (91%) Strand = Plus / Plus Query: 66 acccccggataagggcgttgtatgtgaaaacatt 99 |||||||||| |||| ||||||||||||||||| Sbjct: 26818 acccccggatcagggaattgtatgtgaaaacatt 26851 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 784,743 Number of Sequences: 3902068 Number of extensions: 784743 Number of successful extensions: 48087 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 48058 Number of HSP's gapped (non-prelim): 29 length of query: 208 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 186 effective length of database: 17,147,199,772 effective search space: 3189379157592 effective search space used: 3189379157592 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)