ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd26a23
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_196545.1| Oryza sativa (japonica cultivar-group) unknown ... 72 7e-10
2dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 72 7e-10
3gb|AC027662.2|AC027662 Oryza sativa (japonica cultivar-group) ch... 72 7e-10
4gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 72 7e-10
5emb|AJ303349.1|CRU303349 Capsella rubella ORF1, ORF2, ORF3, ORF4... 44 0.17

>ref|NM_196545.1| Oryza sativa (japonica cultivar-group) unknown protein
            (OSJNBa0053G13.19), mRNA
          Length = 3840

 Score = 71.9 bits (36), Expect = 7e-10
 Identities = 75/89 (84%)
 Strand = Plus / Minus

                                                                        
Query: 50   ctgccagagacnctgtacccccggataagggcgttgtatgtgaaaacattgggcttccag 109
            ||||| || || ||||||||||  ||||| ||||| ||||||||||| || |||||||||
Sbjct: 3554 ctgccggaaacactgtaccccctaataagagcgttatatgtgaaaacgttaggcttccag 3495

                                         
Query: 110  cctttcnccagcanttcttcatacatttt 138
            ||||||  ||| |  ||||||||||||||
Sbjct: 3494 cctttcgtcagtagctcttcatacatttt 3466



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 71.9 bits (36), Expect = 7e-10
 Identities = 75/89 (84%)
 Strand = Plus / Plus

                                                                            
Query: 50       ctgccagagacnctgtacccccggataagggcgttgtatgtgaaaacattgggcttccag 109
                ||||| || || ||||||||||  ||||| ||||| ||||||||||| || |||||||||
Sbjct: 14383237 ctgccggaaacactgtaccccctaataagagcgttatatgtgaaaacgttaggcttccag 14383296

                                             
Query: 110      cctttcnccagcanttcttcatacatttt 138
                ||||||  ||| |  ||||||||||||||
Sbjct: 14383297 cctttcgtcagtagctcttcatacatttt 14383325



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>gb|AC027662.2|AC027662 Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0053G13,
              complete sequence
          Length = 138245

 Score = 71.9 bits (36), Expect = 7e-10
 Identities = 75/89 (84%)
 Strand = Plus / Plus

                                                                          
Query: 50     ctgccagagacnctgtacccccggataagggcgttgtatgtgaaaacattgggcttccag 109
              ||||| || || ||||||||||  ||||| ||||| ||||||||||| || |||||||||
Sbjct: 130512 ctgccggaaacactgtaccccctaataagagcgttatatgtgaaaacgttaggcttccag 130571

                                           
Query: 110    cctttcnccagcanttcttcatacatttt 138
              ||||||  ||| |  ||||||||||||||
Sbjct: 130572 cctttcgtcagtagctcttcatacatttt 130600



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 71.9 bits (36), Expect = 7e-10
 Identities = 75/89 (84%)
 Strand = Plus / Plus

                                                                            
Query: 50       ctgccagagacnctgtacccccggataagggcgttgtatgtgaaaacattgggcttccag 109
                ||||| || || ||||||||||  ||||| ||||| ||||||||||| || |||||||||
Sbjct: 14391479 ctgccggaaacactgtaccccctaataagagcgttatatgtgaaaacgttaggcttccag 14391538

                                             
Query: 110      cctttcnccagcanttcttcatacatttt 138
                ||||||  ||| |  ||||||||||||||
Sbjct: 14391539 cctttcgtcagtagctcttcatacatttt 14391567



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>emb|AJ303349.1|CRU303349 Capsella rubella ORF1, ORF2, ORF3, ORF4, ORF5 and ORF6 (partial)
          Length = 27056

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                               
Query: 66    acccccggataagggcgttgtatgtgaaaacatt 99
             |||||||||| ||||  |||||||||||||||||
Sbjct: 26818 acccccggatcagggaattgtatgtgaaaacatt 26851


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 784,743
Number of Sequences: 3902068
Number of extensions: 784743
Number of successful extensions: 48087
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 48058
Number of HSP's gapped (non-prelim): 29
length of query: 208
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 186
effective length of database: 17,147,199,772
effective search space: 3189379157592
effective search space used: 3189379157592
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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