ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd25l21
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC135418.3| Oryza sativa (japonica cultivar-group) chromosome... 111 1e-21
2gb|AC120991.3| Oryza sativa (japonica cultivar-group) chromosome... 111 1e-21
3dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 111 1e-21
4dbj|AK104366.1| Oryza sativa (japonica cultivar-group) cDNA clon... 111 1e-21
5dbj|AK104199.1| Oryza sativa (japonica cultivar-group) cDNA clon... 111 1e-21
6dbj|AK070043.1| Oryza sativa (japonica cultivar-group) cDNA clon... 111 1e-21
7gb|BT016325.1| Zea mays clone Contig158 mRNA sequence 84 3e-13
8gb|AY104589.1| Zea mays PCO067801 mRNA sequence 84 3e-13
9ref|XM_367013.1| Magnaporthe grisea 70-15 chromosome VII hypothe... 54 2e-04
10ref|XM_748615.1| Aspergillus fumigatus Af293 hypothetical protei... 50 0.004
11gb|AC162030.8| Medicago truncatula clone mth2-178b21, complete s... 50 0.004
12ref|XM_389598.1| Gibberella zeae PH-1 chromosome 4 hypothetical ... 42 0.92
13gb|DQ397838.1| Cenarchaeum symbiosum clone C03H05, complete sequ... 42 0.92
14dbj|AB194635.1| Leek yellow stripe virus gene for coat protein, ... 42 0.92
15dbj|AB194634.1| Leek yellow stripe virus gene for coat protein, ... 42 0.92
16gb|AC116461.13| Mus musculus chromosome 10, clone RP23-463P8, co... 40 3.6
17gb|AC138769.4| Mus musculus chromosome 18 clone RP23-235B1, comp... 40 3.6
18emb|AL357510.17| Human DNA sequence from clone RP11-195F21 on ch... 40 3.6
19gb|AF097907.1| Rana catesbeiana myosin heavy chain (MHC-4) mRNA,... 40 3.6
20gb|DQ397875.1| Cenarchaeum symbiosum clone C07F02, complete sequ... 40 3.6
21gb|DQ397873.1| Cenarchaeum symbiosum clone C13A11, complete sequ... 40 3.6
22gb|DQ397858.1| Cenarchaeum symbiosum clone C05G02, complete sequ... 40 3.6
23gb|DQ397630.1| Cenarchaeum symbiosum clone C01C08, complete sequ... 40 3.6
24gb|DQ060521.1| Bean yellow mosaic virus polyprotein mRNA, partia... 40 3.6
25gb|AC153952.4| Mus musculus 10 BAC RP24-82M14 (Roswell Park Canc... 40 3.6
26emb|BX294669.8| Zebrafish DNA sequence from clone CH211-134K13 i... 40 3.6 
>gb|AC135418.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0035J16,
              complete sequence
          Length = 170233

 Score =  111 bits (56), Expect = 1e-21
 Identities = 76/83 (91%)
 Strand = Plus / Plus

                                                                          
Query: 196    aggaacaggttgaggatgtcgaggtaaagttcaacagaagcccaaatgtactcntcataa 255
              ||||||| |||||||||||| ||||| || |||||||| ||||||||||| || ||||||
Sbjct: 147801 aggaacaagttgaggatgtcaaggtagagctcaacagaggcccaaatgtagtcgtcataa 147860

                                     
Query: 256    gtgtggcgctttatcaagttctc 278
              |||||||||||||||||||||||
Sbjct: 147861 gtgtggcgctttatcaagttctc 147883
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>gb|AC120991.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0006J12, complete sequence
          Length = 157069

 Score =  111 bits (56), Expect = 1e-21
 Identities = 76/83 (91%)
 Strand = Plus / Plus

                                                                         
Query: 196   aggaacaggttgaggatgtcgaggtaaagttcaacagaagcccaaatgtactcntcataa 255
             ||||||| |||||||||||| ||||| || |||||||| ||||||||||| || ||||||
Sbjct: 45164 aggaacaagttgaggatgtcaaggtagagctcaacagaggcccaaatgtagtcgtcataa 45223

                                    
Query: 256   gtgtggcgctttatcaagttctc 278
             |||||||||||||||||||||||
Sbjct: 45224 gtgtggcgctttatcaagttctc 45246
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  111 bits (56), Expect = 1e-21
 Identities = 76/83 (91%)
 Strand = Plus / Plus

                                                                            
Query: 196      aggaacaggttgaggatgtcgaggtaaagttcaacagaagcccaaatgtactcntcataa 255
                ||||||| |||||||||||| ||||| || |||||||| ||||||||||| || ||||||
Sbjct: 19444452 aggaacaagttgaggatgtcaaggtagagctcaacagaggcccaaatgtagtcgtcataa 19444511

                                       
Query: 256      gtgtggcgctttatcaagttctc 278
                |||||||||||||||||||||||
Sbjct: 19444512 gtgtggcgctttatcaagttctc 19444534
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>dbj|AK104366.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-D07, full
           insert sequence
          Length = 1060

 Score =  111 bits (56), Expect = 1e-21
 Identities = 76/83 (91%)
 Strand = Plus / Minus

                                                                       
Query: 196 aggaacaggttgaggatgtcgaggtaaagttcaacagaagcccaaatgtactcntcataa 255
           ||||||| |||||||||||| ||||| || |||||||| ||||||||||| || ||||||
Sbjct: 832 aggaacaagttgaggatgtcaaggtagagctcaacagaggcccaaatgtagtcgtcataa 773

                                  
Query: 256 gtgtggcgctttatcaagttctc 278
           |||||||||||||||||||||||
Sbjct: 772 gtgtggcgctttatcaagttctc 750
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>dbj|AK104199.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-A08, full
           insert sequence
          Length = 1060

 Score =  111 bits (56), Expect = 1e-21
 Identities = 76/83 (91%)
 Strand = Plus / Minus

                                                                       
Query: 196 aggaacaggttgaggatgtcgaggtaaagttcaacagaagcccaaatgtactcntcataa 255
           ||||||| |||||||||||| ||||| || |||||||| ||||||||||| || ||||||
Sbjct: 832 aggaacaagttgaggatgtcaaggtagagctcaacagaggcccaaatgtagtcgtcataa 773

                                  
Query: 256 gtgtggcgctttatcaagttctc 278
           |||||||||||||||||||||||
Sbjct: 772 gtgtggcgctttatcaagttctc 750
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>dbj|AK070043.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023039E14, full
           insert sequence
          Length = 1106

 Score =  111 bits (56), Expect = 1e-21
 Identities = 76/83 (91%)
 Strand = Plus / Minus

                                                                       
Query: 196 aggaacaggttgaggatgtcgaggtaaagttcaacagaagcccaaatgtactcntcataa 255
           ||||||| |||||||||||| ||||| || |||||||| ||||||||||| || ||||||
Sbjct: 833 aggaacaagttgaggatgtcaaggtagagctcaacagaggcccaaatgtagtcgtcataa 774

                                  
Query: 256 gtgtggcgctttatcaagttctc 278
           |||||||||||||||||||||||
Sbjct: 773 gtgtggcgctttatcaagttctc 751
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>gb|BT016325.1| Zea mays clone Contig158 mRNA sequence
          Length = 1172

 Score = 83.8 bits (42), Expect = 3e-13
 Identities = 89/105 (84%)
 Strand = Plus / Minus

                                                                       
Query: 174 cctgagcatctgtaggatggtgaggaacaggttgaggatgtcgaggtaaagttcaacaga 233
           ||||||||| |  ||||||| |||||||||||| |||||||||||||| ||  |||| ||
Sbjct: 862 cctgagcatgttcaggatggagaggaacaggttcaggatgtcgaggtacagcccaaccga 803

                                                        
Query: 234 agcccaaatgtactcntcataagtgtggcgctttatcaagttctc 278
            ||||| |||||||| || || ||||||||||| |||| ||||||
Sbjct: 802 cgcccagatgtactcgtcgtaggtgtggcgcttgatcaggttctc 758
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>gb|AY104589.1| Zea mays PCO067801 mRNA sequence
          Length = 1197

 Score = 83.8 bits (42), Expect = 3e-13
 Identities = 89/105 (84%)
 Strand = Plus / Minus

                                                                       
Query: 174 cctgagcatctgtaggatggtgaggaacaggttgaggatgtcgaggtaaagttcaacaga 233
           ||||||||| |  ||||||| |||||||||||| |||||||||||||| ||  |||| ||
Sbjct: 908 cctgagcatgttcaggatggagaggaacaggttcaggatgtcgaggtacagcccaaccga 849

                                                        
Query: 234 agcccaaatgtactcntcataagtgtggcgctttatcaagttctc 278
            ||||| |||||||| || || ||||||||||| |||| ||||||
Sbjct: 848 cgcccagatgtactcgtcgtaggtgtggcgcttgatcaggttctc 804
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>ref|XM_367013.1| Magnaporthe grisea 70-15 chromosome VII hypothetical protein
           (MG03089.4) partial mRNA
          Length = 849

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                              
Query: 187 aggatggtgaggaacaggttgaggatgtcgaggta 221
           ||||||| |||||||||||||| ||||||||||||
Sbjct: 818 aggatggcgaggaacaggttgatgatgtcgaggta 784
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>ref|XM_748615.1| Aspergillus fumigatus Af293 hypothetical protein (Afu5g09310)
           partial mRNA
          Length = 846

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                        
Query: 196 aggaacaggttgaggatgtcgaggtaaag 224
           |||||||||||||||||||| ||||||||
Sbjct: 773 aggaacaggttgaggatgtccaggtaaag 745
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>gb|AC162030.8| Medicago truncatula clone mth2-178b21, complete sequence
          Length = 85986

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 63/76 (82%)
 Strand = Plus / Plus

                                                                         
Query: 196   aggaacaggttgaggatgtcgaggtaaagttcaacagaagcccaaatgtactcntcataa 255
             ||||||||||| || |||||||| |||||    ||||| |||| |||||| || ||||||
Sbjct: 71398 aggaacaggttcagaatgtcgagataaagagtgacagaggccccaatgtattcatcataa 71457

                             
Query: 256   gtgtggcgctttatca 271
             || |||||||| ||||
Sbjct: 71458 gtatggcgcttgatca 71473
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>ref|XM_389598.1| Gibberella zeae PH-1 chromosome 4 hypothetical protein (FG09422.1)
           partial mRNA
          Length = 831

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 196 aggaacaggttgaggatgtcgaggtaaag 224
           ||||| ||||||| |||||||||||||||
Sbjct: 791 aggaagaggttgatgatgtcgaggtaaag 763
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>gb|DQ397838.1| Cenarchaeum symbiosum clone C03H05, complete sequence
          Length = 39721

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 213   gtcgaggtaaagttcaacaga 233
             |||||||||||||||||||||
Sbjct: 32776 gtcgaggtaaagttcaacaga 32796
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>dbj|AB194635.1| Leek yellow stripe virus gene for coat protein, partial cds,
           isolate: Korea:Import.#2
          Length = 864

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 188 ggatggtgaggaacaggttga 208
           |||||||||||||||||||||
Sbjct: 468 ggatggtgaggaacaggttga 488
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>dbj|AB194634.1| Leek yellow stripe virus gene for coat protein, partial cds,
           isolate: Korea:Import.#1
          Length = 864

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 188 ggatggtgaggaacaggttga 208
           |||||||||||||||||||||
Sbjct: 468 ggatggtgaggaacaggttga 488
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>gb|AC116461.13| Mus musculus chromosome 10, clone RP23-463P8, complete sequence
          Length = 203737

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 222   aagttcaacagaagcccaaa 241
             ||||||||||||||||||||
Sbjct: 10268 aagttcaacagaagcccaaa 10287
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>gb|AC138769.4| Mus musculus chromosome 18 clone RP23-235B1, complete sequence
          Length = 189897

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 101    taaaggttggacatatgacc 120
              ||||||||||||||||||||
Sbjct: 143135 taaaggttggacatatgacc 143154
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>emb|AL357510.17| Human DNA sequence from clone RP11-195F21 on chromosome 10 Contains the
             5' end of a novel gene, complete sequence
          Length = 121493

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 223   agttcaacagaagcccaaat 242
             ||||||||||||||||||||
Sbjct: 26471 agttcaacagaagcccaaat 26490
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>gb|AF097907.1| Rana catesbeiana myosin heavy chain (MHC-4) mRNA, partial cds
          Length = 2584

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 187 aggatggtgaggaacaggttgagg 210
           |||||| |||||||||||||||||
Sbjct: 867 aggatgctgaggaacaggttgagg 890
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>gb|DQ397875.1| Cenarchaeum symbiosum clone C07F02, complete sequence
          Length = 41724

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 213 gtcgaggtaaagttcaacag 232
           ||||||||||||||||||||
Sbjct: 674 gtcgaggtaaagttcaacag 693
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>gb|DQ397873.1| Cenarchaeum symbiosum clone C13A11, complete sequence
          Length = 40499

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 213   gtcgaggtaaagttcaacag 232
             ||||||||||||||||||||
Sbjct: 33807 gtcgaggtaaagttcaacag 33788
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>gb|DQ397858.1| Cenarchaeum symbiosum clone C05G02, complete sequence
          Length = 39265

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 213  gtcgaggtaaagttcaacag 232
            ||||||||||||||||||||
Sbjct: 8802 gtcgaggtaaagttcaacag 8783
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>gb|DQ397630.1| Cenarchaeum symbiosum clone C01C08, complete sequence
          Length = 44451

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 213   gtcgaggtaaagttcaacag 232
             ||||||||||||||||||||
Sbjct: 41025 gtcgaggtaaagttcaacag 41006
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>gb|DQ060521.1| Bean yellow mosaic virus polyprotein mRNA, partial cds
          Length = 1630

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 188  ggatggtgaggaacaggttg 207
            ||||||||||||||||||||
Sbjct: 1062 ggatggtgaggaacaggttg 1081
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>gb|AC153952.4| Mus musculus 10 BAC RP24-82M14 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 183398

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 222   aagttcaacagaagcccaaa 241
             ||||||||||||||||||||
Sbjct: 38282 aagttcaacagaagcccaaa 38263
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>emb|BX294669.8| Zebrafish DNA sequence from clone CH211-134K13 in linkage group 9,
             complete sequence
          Length = 180734

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 233   aagcccaaatgtactcntcataa 255
             |||||||||||||||| ||||||
Sbjct: 16061 aagcccaaatgtactcttcataa 16083


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,626,202
Number of Sequences: 3902068
Number of extensions: 1626202
Number of successful extensions: 28685
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 28641
Number of HSP's gapped (non-prelim): 45
length of query: 278
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 256
effective length of database: 17,147,199,772
effective search space: 4389683141632
effective search space used: 4389683141632
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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