ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd26a20
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC090239.6| Homo sapiens chromosome 18, clone RP11-746A20, co... 48 0.006
2gb|AY244513.1| Triticum monococcum cultivar G2528 tousled-like k... 48 0.006
3gb|AF258609.1|AF258609 Aegilops tauschii starch synthase III gen... 48 0.006
4emb|AJ971809.1| Vicia faba mRNA for SNF1-related protein kinase ... 46 0.025
5gb|BC078287.1| Danio rerio thyrotroph embryonic factor, mRNA (cD... 44 0.097
6ref|XM_684232.1| PREDICTED: Danio rerio similar to thyrotroph em... 44 0.097
7emb|BX323878.10| Zebrafish DNA sequence from clone CH211-57E23 i... 44 0.097
8gb|U43671.1|DRU43671 Danio rerio thyrotroph embryonic factor alp... 44 0.097
9emb|BX000473.6| Zebrafish DNA sequence from clone CH211-141O9, c... 44 0.097
10ref|NM_131400.1| Danio rerio thyrotroph embryonic factor (tef), ... 44 0.097
11gb|AF521177.1| Hordeum vulgare contig 211252, complete sequence 42 0.38
12ref|NM_114509.1| Arabidopsis thaliana ATP binding / kinase/ prot... 40 1.5
13gb|AC007569.22| Homo sapiens 12 BAC RP11-689B22 (Roswell Park Ca... 40 1.5
14emb|AL162723.12| Human DNA sequence from clone RP13-428K23 on ch... 40 1.5
15emb|AL133298.1|ATF18L15 Arabidopsis thaliana DNA chromosome 3, B... 40 1.5
16gb|AC087683.5| Homo sapiens chromosome 18, clone RP11-687E1, com... 40 1.5
17gb|AY244512.1| Triticum monococcum cultivar G2528 tousled-like k... 40 1.5
18gb|AC010905.3|AC010905 Homo sapiens BAC clone RP11-560B8 from Y,... 40 1.5
19gb|AY963808.1| Triticum aestivum putative S-locus receptor kinas... 40 1.5
20gb|AF466200.2| Sorghum bicolor putative protein kinase gene, par... 40 1.5
21emb|CT963105.1| Medicago truncatula chromosome 5 clone mte1-71h1... 40 1.5
22gb|AC114966.2| Homo sapiens chromosome 5 clone RP11-291O24, comp... 40 1.5
23gb|AC128703.4| Mus musculus BAC clone RP23-356E22 from 19, compl... 40 1.5
24gb|AC154029.4| Mus musculus 6 BAC RP23-26J14 (Roswell Park Cance... 40 1.5
25gb|AC171727.1| Lycopersicon esculentum chromosome 01 clone C01HB... 40 1.5
26ref|XM_511111.1| PREDICTED: Pan troglodytes similar to craniofac... 38 6.0
27gb|AY693814.1| Uncultured archaeon clone ARC26 16S ribosomal RNA... 38 6.0
28gb|AF172282.1| Oryza sativa adh1-adh2 region 38 6.0
29gb|AC150881.4| Bos taurus BAC CH240-354J15 (Children's Hospital... 38 6.0
30gb|DQ200789.1| Uncultured archaeon clone A19-1238 16S ribosomal ... 38 6.0
31gb|AF225635.1| Uncultured archaeon clone AS08-03 16S ribosomal R... 38 6.0
32gb|AF050615.1| Uncultured archaeon WCHA2-08 16S ribosomal RNA ge... 38 6.0
33gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 38 6.0
34gb|AC106887.3| Oryza sativa chromosome 3 BAC OSJNBa0054H04 genom... 38 6.0
35gb|AC140373.2| Mus musculus BAC clone RP23-197O10 from chromosom... 38 6.0
36gb|AC116533.11| Homo sapiens chromosome 11, clone RP11-466H18, c... 38 6.0
37gb|AC123522.2| Oryza sativa (japonica cultivar-group) chromosome... 38 6.0
38gb|AC123521.2| Oryza sativa (japonica cultivar-group) chromosome... 38 6.0
39gb|BT009024.1| Triticum aestivum clone wdk3c.pk016.i8:fis, full ... 38 6.0
40emb|BX469911.9| Zebrafish DNA sequence from clone DKEY-13K9 in l... 38 6.0
41dbj|AB199839.1| Uncultured archaeon gene for 16S ribosomal RNA, ... 38 6.0
42dbj|AB113852.1| Uncultured archaeon gene for 16S rRNA, partial s... 38 6.0
43gb|AC093718.3| Homo sapiens 12 BAC RP11-742C6 (Roswell Park Canc... 38 6.0
44gb|AC078811.9| Homo sapiens 3 BAC RP11-309H18 (Roswell Park Canc... 38 6.0
45dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 38 6.0
46dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 38 6.0
47dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 38 6.0
48dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 38 6.0
49gb|AC009054.8| Homo sapiens chromosome 16 clone RP11-252K23, com... 38 6.0
50dbj|AB077218.1| Uncultured Methanomicrobiales archaeon gene for ... 38 6.0
51gb|AC126389.7| Homo sapiens chromosome 11, clone CTD-3236F5, com... 38 6.0
52dbj|AP006166.3| Oryza sativa (japonica cultivar-group) genomic D... 38 6.0
53dbj|AP005748.3| Oryza sativa (japonica cultivar-group) genomic D... 38 6.0
54dbj|AP004664.5| Oryza sativa (japonica cultivar-group) genomic D... 38 6.0
55emb|AM259202.1| Uncultured methanogenic archaeon partial 16S rRN... 38 6.0
56emb|AM259192.1| Uncultured methanogenic archaeon partial 16S rRN... 38 6.0
57emb|AM259189.1| Uncultured methanogenic archaeon partial 16S rRN... 38 6.0
58gb|AC006597.2|AC006597 Homo sapiens Chromosome 11p14.3 PAC clone... 38 6.0
59emb|AJ556297.1|UAR556297 Uncultured archaeon partial 16S rRNA ge... 38 6.0
60gb|AC171274.2| Gallus gallus BAC clone CH261-121C13 from chromos... 38 6.0
61emb|AJ236511.1|UAR236511 uncultured archaeon S15-30 16S ribosoma... 38 6.0
62emb|AJ879045.1| Uncultured Methanomicrobiaceae archaeon partial ... 38 6.0
63emb|AJ879031.1| Uncultured Methanomicrobiaceae archaeon partial ... 38 6.0
64gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 38 6.0
65gb|DQ273270.1| Allium cepa clone 1G-12-89, complete sequence 38 6.0 
>gb|AC090239.6| Homo sapiens chromosome 18, clone RP11-746A20, complete sequence
          Length = 184635

 Score = 48.1 bits (24), Expect = 0.006
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                         
Query: 82    aattatgcggtttcatgttgtacatatt 109
             ||||||| ||||||||||||||||||||
Sbjct: 28031 aattatgaggtttcatgttgtacatatt 28004
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>gb|AY244513.1| Triticum monococcum cultivar G2528 tousled-like kinase (MTK4) gene,
           partial cds
          Length = 1053

 Score = 48.1 bits (24), Expect = 0.006
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 24  aagtaatatggattggagggagta 47
           ||||||||||||||||||||||||
Sbjct: 834 aagtaatatggattggagggagta 857



 Score = 40.1 bits (20), Expect = 1.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 24  aagtaatatggattggagggagta 47
           ||||||||||||| ||||||||||
Sbjct: 811 aagtaatatggatcggagggagta 788
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>gb|AF258609.1|AF258609 Aegilops tauschii starch synthase III gene, complete cds
          Length = 11550

 Score = 48.1 bits (24), Expect = 0.006
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                    
Query: 24   aagtaatatggattggagggagta 47
            ||||||||||||||||||||||||
Sbjct: 6566 aagtaatatggattggagggagta 6543



 Score = 40.1 bits (20), Expect = 1.5
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                            
Query: 19   gtgataagtaatatggattggagggagtacta 50
            |||| ||||||||||||  |||||||||||||
Sbjct: 6611 gtgacaagtaatatggaccggagggagtacta 6642
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>emb|AJ971809.1| Vicia faba mRNA for SNF1-related protein kinase (snrk1 gene)
          Length = 2024

 Score = 46.1 bits (23), Expect = 0.025
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                       
Query: 94   tcatgttgtacatattattgcttctct 120
            |||||||||||||||||||||| ||||
Sbjct: 1770 tcatgttgtacatattattgctgctct 1796
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>gb|BC078287.1| Danio rerio thyrotroph embryonic factor, mRNA (cDNA clone MGC:100755
            IMAGE:7138441), complete cds
          Length = 2780

 Score = 44.1 bits (22), Expect = 0.097
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 91   gtttcatgttgtacatattatt 112
            ||||||||||||||||||||||
Sbjct: 2711 gtttcatgttgtacatattatt 2732
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>ref|XM_684232.1| PREDICTED: Danio rerio similar to thyrotroph embryonic factor beta,
            transcript variant 1 (LOC565227), mRNA
          Length = 2735

 Score = 44.1 bits (22), Expect = 0.097
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 91   gtttcatgttgtacatattatt 112
            ||||||||||||||||||||||
Sbjct: 2696 gtttcatgttgtacatattatt 2717
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>emb|BX323878.10| Zebrafish DNA sequence from clone CH211-57E23 in linkage group 12,
            complete sequence
          Length = 190541

 Score = 44.1 bits (22), Expect = 0.097
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 91   gtttcatgttgtacatattatt 112
            ||||||||||||||||||||||
Sbjct: 3361 gtttcatgttgtacatattatt 3340
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>gb|U43671.1|DRU43671 Danio rerio thyrotroph embryonic factor alpha isoform mRNA, complete
            cds
          Length = 2750

 Score = 44.1 bits (22), Expect = 0.097
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 91   gtttcatgttgtacatattatt 112
            ||||||||||||||||||||||
Sbjct: 2690 gtttcatgttgtacatattatt 2711
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>emb|BX000473.6| Zebrafish DNA sequence from clone CH211-141O9, complete sequence
          Length = 180366

 Score = 44.1 bits (22), Expect = 0.097
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 91    gtttcatgttgtacatattatt 112
             ||||||||||||||||||||||
Sbjct: 36103 gtttcatgttgtacatattatt 36082
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>ref|NM_131400.1| Danio rerio thyrotroph embryonic factor (tef), mRNA
          Length = 2750

 Score = 44.1 bits (22), Expect = 0.097
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 91   gtttcatgttgtacatattatt 112
            ||||||||||||||||||||||
Sbjct: 2690 gtttcatgttgtacatattatt 2711
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>gb|AF521177.1| Hordeum vulgare contig 211252, complete sequence
          Length = 211664

 Score = 42.1 bits (21), Expect = 0.38
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                   
Query: 13     atttgagtgataagtaatatggattggagggagtact 49
              |||| ||||| |||||| |||||| ||||||||||||
Sbjct: 205175 atttaagtgacaagtaaaatggatcggagggagtact 205211
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>ref|NM_114509.1| Arabidopsis thaliana ATP binding / kinase/ protein kinase/ protein
           serine/threonine kinase/ protein-tyrosine kinase
           AT3G46420 mRNA, complete cds
          Length = 2517

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 42  ggagtactagatttcccaag 61
           ||||||||||||||||||||
Sbjct: 793 ggagtactagatttcccaag 812
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>gb|AC007569.22| Homo sapiens 12 BAC RP11-689B22 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 111074

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 4     gacacattcatttgagtgataagt 27
             |||||||||||| |||||||||||
Sbjct: 66300 gacacattcattcgagtgataagt 66323
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>emb|AL162723.12| Human DNA sequence from clone RP13-428K23 on chromosome X, complete
             sequence
          Length = 192780

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 107   attattgcttctctgaatcc 126
             ||||||||||||||||||||
Sbjct: 29353 attattgcttctctgaatcc 29334
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>emb|AL133298.1|ATF18L15 Arabidopsis thaliana DNA chromosome 3, BAC clone F18L15
          Length = 100328

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 42    ggagtactagatttcccaag 61
             ||||||||||||||||||||
Sbjct: 69720 ggagtactagatttcccaag 69739
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>gb|AC087683.5| Homo sapiens chromosome 18, clone RP11-687E1, complete sequence
          Length = 181036

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 82    aattatgcggtttcatgttgtacatatt 109
             ||||||| ||||||| ||||||||||||
Sbjct: 57164 aattatgaggtttcacgttgtacatatt 57191
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>gb|AY244512.1| Triticum monococcum cultivar G2528 tousled-like kinase (MTK4) gene,
           partial cds
          Length = 1049

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 24  aagtaatatggattggagggagta 47
           |||||| |||||||||||||||||
Sbjct: 830 aagtaaaatggattggagggagta 853
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>gb|AC010905.3|AC010905 Homo sapiens BAC clone RP11-560B8 from Y, complete sequence
          Length = 152599

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 107    attattgcttctctgaatcc 126
              ||||||||||||||||||||
Sbjct: 143003 attattgcttctctgaatcc 142984
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>gb|AY963808.1| Triticum aestivum putative S-locus receptor kinase gene, partial cds;
            and mitochondrial Mn-superoxide dismutase (MnSOD) gene,
            complete cds, nuclear gene encoding mitochondrial protein
          Length = 11304

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 18   agtgataagtaatatggattggagggagtact 49
            ||||| ||||||||||||  ||||||||||||
Sbjct: 8431 agtgacaagtaatatggaacggagggagtact 8400
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>gb|AF466200.2| Sorghum bicolor putative protein kinase gene, partial cds; putative
             Cf-2, fertilization-independent endosperm proteins,
             hypothetical protein, putative non-LTR retroelement
             reverse transcriptase, OCL5 protein, tryptophan synthase
             beta-subunit, hypothetical proteins, putative AP
             endonuclease, putative RNA polymerase II complex component
             SRB7, putative beta-1,3-glucanase, hypothetical protein,
             TNP2-like protein, hypothetical protein, putative
             phosphate/phosphoenolpyruvate translocator, putative
             protein, hypothetical proteins, putative
             galactosyltransferase family, hypothetical protein,
             putative cytochrome P450 family, putative lipid transfer
             protein, putative photoreceptor-interacting protein, and
             hypothetical protein genes, complete cds; and hypothetical
             protein gene, partial cds
          Length = 202197

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 32    tggattggagggagtactagatttccca 59
             |||| |||||||||||||| ||||||||
Sbjct: 49191 tggagtggagggagtactatatttccca 49218
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>emb|CT963105.1| Medicago truncatula chromosome 5 clone mte1-71h1, COMPLETE SEQUENCE
          Length = 68887

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 27    taatatggattggagggagtacta 50
             ||||| ||||||||||||||||||
Sbjct: 44226 taataaggattggagggagtacta 44203
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>gb|AC114966.2| Homo sapiens chromosome 5 clone RP11-291O24, complete sequence
          Length = 155461

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 104   catattattgcttctctgaa 123
             ||||||||||||||||||||
Sbjct: 43918 catattattgcttctctgaa 43899
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>gb|AC128703.4| Mus musculus BAC clone RP23-356E22 from 19, complete sequence
          Length = 221568

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 49    tagatttcccaagaaacttc 68
             ||||||||||||||||||||
Sbjct: 97101 tagatttcccaagaaacttc 97120
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>gb|AC154029.4| Mus musculus 6 BAC RP23-26J14 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 188537

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 102   tacatattattgcttctctg 121
             ||||||||||||||||||||
Sbjct: 85079 tacatattattgcttctctg 85060
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>gb|AC171727.1| Lycopersicon esculentum chromosome 01 clone C01HBa0163B20, complete
             sequence
          Length = 134102

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 24    aagtaatatggattggagggagta 47
             |||||||||||| |||||||||||
Sbjct: 33041 aagtaatatggaatggagggagta 33018
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>ref|XM_511111.1| PREDICTED: Pan troglodytes similar to craniofacial development
            protein 1; phosphoprotein (Bucentaur) (LOC454248), mRNA
          Length = 1209

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 102  tacatattattgcttctctgaat 124
            |||| ||||||||||||||||||
Sbjct: 1037 tacacattattgcttctctgaat 1059
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>gb|AY693814.1| Uncultured archaeon clone ARC26 16S ribosomal RNA gene, partial
          sequence
          Length = 984

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                             
Query: 49 tagatttcccaagaaactt 67
          |||||||||||||||||||
Sbjct: 80 tagatttcccaagaaactt 62
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>gb|AF172282.1| Oryza sativa adh1-adh2 region
          Length = 339485

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 32    tggattggagggagtacta 50
             |||||||||||||||||||
Sbjct: 56350 tggattggagggagtacta 56368
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>gb|AC150881.4| Bos taurus  BAC CH240-354J15 (Children's Hospital Oakland Research
             Institute Bovine BAC Library (male)) complete sequence
          Length = 174996

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 100   tgtacatattattgcttctctga 122
             |||||||||| ||||||||||||
Sbjct: 73395 tgtacatatttttgcttctctga 73373
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>gb|DQ200789.1| Uncultured archaeon clone A19-1238 16S ribosomal RNA gene, partial
           sequence
          Length = 500

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 49  tagatttcccaagaaactt 67
           |||||||||||||||||||
Sbjct: 228 tagatttcccaagaaactt 210
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>gb|AF225635.1| Uncultured archaeon clone AS08-03 16S ribosomal RNA gene, partial
           sequence
          Length = 749

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 49  tagatttcccaagaaactt 67
           |||||||||||||||||||
Sbjct: 446 tagatttcccaagaaactt 428
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>gb|AF050615.1| Uncultured archaeon WCHA2-08 16S ribosomal RNA gene, partial
          sequence
          Length = 951

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                             
Query: 49 tagatttcccaagaaactt 67
          |||||||||||||||||||
Sbjct: 80 tagatttcccaagaaactt 62
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                       
Query: 28       aatatggattggagggagtacta 50
                ||||||||||| |||||||||||
Sbjct: 18273084 aatatggattgcagggagtacta 18273062
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>gb|AC106887.3| Oryza sativa chromosome 3 BAC OSJNBa0054H04 genomic sequence, complete
             sequence
          Length = 159579

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 28    aatatggattggagggagtacta 50
             ||||||||||| |||||||||||
Sbjct: 39515 aatatggattgcagggagtacta 39493
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>gb|AC140373.2| Mus musculus BAC clone RP23-197O10 from chromosome 15, complete
             sequence
          Length = 215314

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 16    tgagtgataagtaatatggattg 38
             |||||||||||| ||||||||||
Sbjct: 46370 tgagtgataagtcatatggattg 46392
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>gb|AC116533.11| Homo sapiens chromosome 11, clone RP11-466H18, complete sequence
          Length = 189143

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 99    ttgtacatattattgcttc 117
             |||||||||||||||||||
Sbjct: 46709 ttgtacatattattgcttc 46691
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>gb|AC123522.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0051B13,
              complete sequence
          Length = 178000

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 32     tggattggagggagtacta 50
              |||||||||||||||||||
Sbjct: 164733 tggattggagggagtacta 164715
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>gb|AC123521.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0037P04, complete sequence
          Length = 139693

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 32    tggattggagggagtacta 50
             |||||||||||||||||||
Sbjct: 92175 tggattggagggagtacta 92157
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>gb|BT009024.1| Triticum aestivum clone wdk3c.pk016.i8:fis, full insert mRNA
           sequence
          Length = 873

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                      
Query: 24  aagtaatatggattggagggagtacta 50
           ||||||||||||| ||||||| |||||
Sbjct: 663 aagtaatatggatcggagggactacta 637
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>emb|BX469911.9| Zebrafish DNA sequence from clone DKEY-13K9 in linkage group 5, complete
              sequence
          Length = 226730

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 82     aattatgcggtttcatgtt 100
              |||||||||||||||||||
Sbjct: 202611 aattatgcggtttcatgtt 202629
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>dbj|AB199839.1| Uncultured archaeon gene for 16S ribosomal RNA, partial sequence,
           isolate:DGGE band I 0357F/0691R
          Length = 288

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 49  tagatttcccaagaaactt 67
           |||||||||||||||||||
Sbjct: 210 tagatttcccaagaaactt 192
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>dbj|AB113852.1| Uncultured archaeon gene for 16S rRNA, partial sequence,
           clone:E2-5b
          Length = 288

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 49  tagatttcccaagaaactt 67
           |||||||||||||||||||
Sbjct: 210 tagatttcccaagaaactt 192
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>gb|AC093718.3| Homo sapiens 12 BAC RP11-742C6 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 160904

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 3     agacacattcatttgagtg 21
             |||||||||||||||||||
Sbjct: 27167 agacacattcatttgagtg 27149
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>gb|AC078811.9| Homo sapiens 3 BAC RP11-309H18 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 72521

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 20    tgataagtaatatggattg 38
             |||||||||||||||||||
Sbjct: 10844 tgataagtaatatggattg 10826
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 32      tggattggagggagtacta 50
               |||||||||||||||||||
Sbjct: 5619615 tggattggagggagtacta 5619597
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                          
Query: 27      taatatggattggagggagtactagat 53
               ||||||| ||||||||||||| |||||
Sbjct: 3408669 taatatgaattggagggagtaatagat 3408643
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 37       tggagggagtactagattt 55
                |||||||||||||||||||
Sbjct: 11286293 tggagggagtactagattt 11286275
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                       
Query: 28       aatatggattggagggagtacta 50
                ||||||||||| |||||||||||
Sbjct: 18266625 aatatggattgcagggagtacta 18266603
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>gb|AC009054.8| Homo sapiens chromosome 16 clone RP11-252K23, complete sequence
          Length = 157113

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 102   tacatattattgcttctctgaat 124
             |||| ||||||||||||||||||
Sbjct: 32637 tacacattattgcttctctgaat 32615
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>dbj|AB077218.1| Uncultured Methanomicrobiales archaeon gene for 16S rRNA, partial
           sequence, clone:KuA8
          Length = 673

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 49  tagatttcccaagaaactt 67
           |||||||||||||||||||
Sbjct: 227 tagatttcccaagaaactt 209
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>gb|AC126389.7| Homo sapiens chromosome 11, clone CTD-3236F5, complete sequence
          Length = 90300

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 99   ttgtacatattattgcttc 117
            |||||||||||||||||||
Sbjct: 6116 ttgtacatattattgcttc 6134
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>dbj|AP006166.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:B1435D02
          Length = 131152

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 37     tggagggagtactagattt 55
              |||||||||||||||||||
Sbjct: 101592 tggagggagtactagattt 101574
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>dbj|AP005748.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBa0042E12
          Length = 164688

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 37     tggagggagtactagattt 55
              |||||||||||||||||||
Sbjct: 161115 tggagggagtactagattt 161097
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>dbj|AP004664.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0428D12
          Length = 141678

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                        
Query: 27    taatatggattggagggagtactagat 53
             ||||||| ||||||||||||| |||||
Sbjct: 48489 taatatgaattggagggagtaatagat 48463
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>emb|AM259202.1| Uncultured methanogenic archaeon partial 16S rRNA gene, clone
           MAK224a
          Length = 321

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 49  tagatttcccaagaaactt 67
           |||||||||||||||||||
Sbjct: 226 tagatttcccaagaaactt 208
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>emb|AM259192.1| Uncultured methanogenic archaeon partial 16S rRNA gene, clone
           PC6972a
          Length = 323

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 49  tagatttcccaagaaactt 67
           |||||||||||||||||||
Sbjct: 228 tagatttcccaagaaactt 210
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>emb|AM259189.1| Uncultured methanogenic archaeon partial 16S rRNA gene, clone
           PC6969a
          Length = 324

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 49  tagatttcccaagaaactt 67
           |||||||||||||||||||
Sbjct: 229 tagatttcccaagaaactt 211
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>gb|AC006597.2|AC006597 Homo sapiens Chromosome 11p14.3 PAC clone pDJ292d23, complete sequence
          Length = 103306

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 99    ttgtacatattattgcttc 117
             |||||||||||||||||||
Sbjct: 40389 ttgtacatattattgcttc 40407
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>emb|AJ556297.1|UAR556297 Uncultured archaeon partial 16S rRNA gene, clone JRI-24
          Length = 752

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 49  tagatttcccaagaaactt 67
           |||||||||||||||||||
Sbjct: 446 tagatttcccaagaaactt 428
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>gb|AC171274.2| Gallus gallus BAC clone CH261-121C13 from chromosome ul, complete
             sequence
          Length = 218983

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 26    gtaatatggattggaggga 44
             |||||||||||||||||||
Sbjct: 46555 gtaatatggattggaggga 46537
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>emb|AJ236511.1|UAR236511 uncultured archaeon S15-30 16S ribosomal RNA
          Length = 734

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 49  tagatttcccaagaaactt 67
           |||||||||||||||||||
Sbjct: 435 tagatttcccaagaaactt 417
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>emb|AJ879045.1| Uncultured Methanomicrobiaceae archaeon partial 16S rRNA gene,
           clone LrhA71
          Length = 789

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 49  tagatttcccaagaaactt 67
           |||||||||||||||||||
Sbjct: 463 tagatttcccaagaaactt 445
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>emb|AJ879031.1| Uncultured Methanomicrobiaceae archaeon partial 16S rRNA gene,
           clone LrhA51
          Length = 789

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 49  tagatttcccaagaaactt 67
           |||||||||||||||||||
Sbjct: 463 tagatttcccaagaaactt 445
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 32      tggattggagggagtacta 50
               |||||||||||||||||||
Sbjct: 5686092 tggattggagggagtacta 5686074
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>gb|DQ273270.1| Allium cepa clone 1G-12-89, complete sequence
          Length = 107859

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 94     tcatgttgtacatattatt 112
              |||||||||||||||||||
Sbjct: 107410 tcatgttgtacatattatt 107392


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,160,997
Number of Sequences: 3902068
Number of extensions: 1160997
Number of successful extensions: 85199
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 84684
Number of HSP's gapped (non-prelim): 515
length of query: 128
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 107
effective length of database: 17,151,101,840
effective search space: 1835167896880
effective search space used: 1835167896880
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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