ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd25l20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Y1132_METJA (Q58532) Hypothetical UPF0058 protein MJ1132 30 2.9
2SUHW3_HUMAN (Q8ND82) Suppressor of hairy wing homolog 3 30 3.8
3Z585B_PONPY (Q5RB30) Zinc finger protein 585B 30 3.8
4ATP4A_CANFA (P50996) Potassium-transporting ATPase alpha chain 1... 29 6.5
5M4K3_HUMAN (Q8IVH8) Mitogen-activated protein kinase kinase kina... 29 6.5
6Z585B_HUMAN (Q52M93) Zinc finger protein 585B (zinc finger prote... 29 8.5

>Y1132_METJA (Q58532) Hypothetical UPF0058 protein MJ1132|
          Length = 118

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +1

Query: 244 HCHRLLPYQNSSSLLSAGCILMTQQNNHQDVDSGSALRLKTNKMGH 381
           H HRL   Q ++ LL + C+     NN  +V    A +L+ N   H
Sbjct: 48  HIHRLKSEQKAAILLLSACVASYLANNMDNVPKNLAKKLEENAFKH 93



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>SUHW3_HUMAN (Q8ND82) Suppressor of hairy wing homolog 3|
          Length = 737

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 7/70 (10%)
 Frame = -2

Query: 414 QGKDPAAGVCLMSHLVRLQSK-------CAPRINVLVVILLGHQNTSCRKQRGTVLIRQK 256
           +G  P A V + + L  LQSK       CAP  + L V     QNT+ R  R +   R K
Sbjct: 502 EGLPPGAKVTIRASLGPLQSKLPTAPFGCAPGTSFLQVTPPTSQNTTARNPRKSNASRSK 561

Query: 255 TMTVPTVVQT 226
           T  +     T
Sbjct: 562 TSKLHATTST 571



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>Z585B_PONPY (Q5RB30) Zinc finger protein 585B|
          Length = 769

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 17/72 (23%), Positives = 31/72 (43%)
 Frame = +1

Query: 169 RTVFTITLVRRQVSWMLSRCLYHCGHCHRLLPYQNSSSLLSAGCILMTQQNNHQDVDSGS 348
           ++VF ++ + R         LY C  C +  PY +  S+      + T + +H+  D G 
Sbjct: 193 KSVFQVSSLFRHQRIHTGEKLYQCSECGKGFPYNSDLSIHEK---IHTGERHHECTDCGK 249

Query: 349 ALRLKTNKMGHQ 384
           A   ++    HQ
Sbjct: 250 AFTQRSTLKMHQ 261



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>ATP4A_CANFA (P50996) Potassium-transporting ATPase alpha chain 1 (EC 3.6.3.10)|
           (Proton pump) (Gastric H+/K+ ATPase alpha subunit)
          Length = 1033

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
 Frame = -2

Query: 390 VCLMSHLVRLQSKCAPRINVLVVILLGHQNTSCRKQRGTVLIRQKTMTVPTVVQTPREHP 211
           VCL     RL SK     N+  V  LG ++  C  + GT  + Q +MTV  +      H 
Sbjct: 351 VCLSLTAKRLASKNCVVKNLEAVETLGSKSVICSDKTGT--LTQNSMTVSNLWFDNHIHT 408

Query: 210 RD-LPPHKGDREDCTAEQW 157
            D      G + D ++E W
Sbjct: 409 ADTTEDQSGQKFDQSSETW 427



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>M4K3_HUMAN (Q8IVH8) Mitogen-activated protein kinase kinase kinase kinase 3|
           (EC 2.7.11.1) (MAPK/ERK kinase kinase kinase 3) (MEK
           kinase kinase 3) (MEKKK 3) (Germinal center
           kinase-related protein kinase) (GLK)
          Length = 894

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 10/41 (24%)
 Frame = -1

Query: 328 GGYFVGSSKYILQKAERNCF----------DKAEDDDSAHS 236
           GGYF+G++K +L+  E              D+ +DD+S HS
Sbjct: 385 GGYFLGANKSLLKSVEEELHQRGHVAHLEDDEGDDDESKHS 425



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>Z585B_HUMAN (Q52M93) Zinc finger protein 585B (zinc finger protein 41-like|
           protein)
          Length = 769

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 15/52 (28%), Positives = 23/52 (44%)
 Frame = +1

Query: 229 LYHCGHCHRLLPYQNSSSLLSAGCILMTQQNNHQDVDSGSALRLKTNKMGHQ 384
           LY C  C +  PY +  S+      + T + +H+  D G A   K+    HQ
Sbjct: 213 LYECSECGKGFPYNSDLSIHEK---IHTGERHHECTDCGKAFTQKSTLKIHQ 261


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,537,833
Number of Sequences: 219361
Number of extensions: 1417976
Number of successful extensions: 3920
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3919
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3754426130
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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