Clone Information

BLAST Search Result

Clone Name	rbasd25l20
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|DQ201157.1\| Hordeum vulgare subsp. vulgare cultivar Kompolti ...	496	e-137
2	gb\|DQ201156.1\| Hordeum vulgare subsp. vulgare cultivar Morex cry...	496	e-137
3	gb\|DQ201155.1\| Hordeum vulgare subsp. vulgare cultivar Dicktoo c...	496	e-137
4	ref\|XM_466830.1\| Oryza sativa (japonica cultivar-group), mRNA	58	3e-05
5	ref\|XM_466829.1\| Oryza sativa (japonica cultivar-group), mRNA	58	3e-05
6	ref\|XM_506872.1\| PREDICTED Oryza sativa (japonica cultivar-group...	58	3e-05
7	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	58	3e-05
8	emb\|AJ490523.1\|OSA490523 Oryza sativa (indica cultivar-group) cr...	58	3e-05
9	emb\|AJ298877.1\|OSA298877 Oryza sativa cry2 gene for cryptochrome 2	58	3e-05
10	emb\|AJ298876.1\|OSA298876 Oryza sativa partial cry2 gene for Cryp...	58	3e-05
11	dbj\|AP006523.2\| Oryza sativa (japonica cultivar-group) genomic D...	58	3e-05
12	dbj\|AK099334.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	58	3e-05
13	dbj\|AK068394.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	58	3e-05
14	dbj\|AK065669.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	58	3e-05
15	dbj\|AB103094.1\| Oryza sativa (japonica cultivar-group) OsCRY2 mR...	58	3e-05
16	gb\|AC150574.2\| Bos taurus BAC CH240-237H4 (Children's Hospital ...	42	1.7
17	gb\|AC022919.8\| Homo sapiens chromosome 18, clone RP11-46D1, comp...	42	1.7
18	dbj\|AP005138.3\| Homo sapiens genomic DNA, chromosome 18 clone:RP...	42	1.7
19	gb\|AY986945.1\| Hypocrella discoidea strain BCC 2097 translation ...	42	1.7
20	dbj\|AP005380.2\| Homo sapiens genomic DNA, chromosome 18 clone:RP...	42	1.7
21	gb\|AC149230.2\| Pan troglodytes BAC clone CH251-557H16 from 7, co...	40	6.9
22	gb\|DQ168727.1\| Cyanauges maculatus voucher CB0433 elongation fac...	40	6.9
23	gb\|DQ168706.1\| Lagenosoma sp. CB0403 elongation factor-1 alpha g...	40	6.9
24	gb\|AC073101.7\| Homo sapiens BAC clone RP11-445E22 from 7, comple...	40	6.9
25	ref\|XM_445571.1\| Candida glabrata CBS138, CAGL0D03586g partial mRNA	40	6.9
26	gb\|AY358159.1\| Homo sapiens clone DNA161000 TCOM (UNQ6123) mRNA,...	40	6.9
27	emb\|AL138930.15\| Human DNA sequence from clone RP11-528G1 on chr...	40	6.9
28	gb\|AC134516.1\| Oryza sativa (japonica cultivar-group) chromosome...	40	6.9
29	emb\|CR380950.1\| Candida glabrata strain CBS138 chromosome D comp...	40	6.9
30	emb\|AJ439353.1\|AGA439353 Anopheles gambiae BAC clone 30E5	40	6.9
31	emb\|AL832854.1\|HSM804165 Homo sapiens mRNA; cDNA DKFZp667L0225 (...	40	6.9
32	gb\|AC101986.10\| Mus musculus chromosome 7, clone RP24-353K18, co...	40	6.9
33	gb\|AC158574.6\| Mus musculus chromosome 7, clone RP24-275O6, comp...	40	6.9
34	gb\|AC154210.2\| Mus musculus BAC clone RP24-113C3 from chromosome...	40	6.9
35	gb\|AC011468.8\| Homo sapiens chromosome 19 clone CTC-471J1, compl...	40	6.9
36	dbj\|AK125624.1\| Homo sapiens cDNA FLJ43636 fis, clone SPLEN20377...	40	6.9
37	gb\|AC107314.1\| Oryza sativa (japonica cultivar-group) cultivar N...	40	6.9
38	ref\|NM_052931.3\| Homo sapiens SLAM family member 6 (SLAMF6), mRNA	40	6.9
39	dbj\|AP008216.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.9
40	gb\|AY392423.2\| Rhodococcus sp. P400 rubredoxin (rub1), putative ...	40	6.9
41	gb\|BC090928.1\| Homo sapiens SLAM family member 6, mRNA (cDNA clo...	40	6.9
42	ref\|XM_321547.2\| Anopheles gambiae str. PEST ENSANGP00000017407 ...	40	6.9
43	emb\|AJ277141.1\|HSA277141 Homo sapiens mRNA for activating NK rec...	40	6.9
44	emb\|AJ306388.1\|HSA306388 Homo sapiens mRNA for NTB-A receptor (K...	40	6.9
45	emb\|BX842684.4\| Zebrafish DNA sequence from clone DKEY-33I22 in ...	40	6.9
46	dbj\|AP003304.2\| Homo sapiens genomic DNA, chromosome 11q clone:R...	40	6.9
47	gb\|AE016959.3\| Oryza sativa (japonica cultivar-group) chromosome...	40	6.9
48	gb\|AC002366.1\|AC002366 Human Xp22 BAC CT-285I15 (from CalTech/Re...	40	6.9
49	emb\|AL929275.8\| Mouse DNA sequence from clone RP23-65P13 on chro...	40	6.9
50	emb\|AL671520.6\| Mouse DNA sequence from clone RP23-99G21 on chro...	40	6.9

>gb|DQ201157.1| Hordeum vulgare subsp. vulgare cultivar Kompolti korai cryptochrome 2
            (Cry2) gene, partial cds; and stowaway MITE, complete
            sequence
          Length = 2686

 Score =  496 bits (250), Expect = e-137
 Identities = 250/250 (100%)
 Strand = Plus / Minus

                                                                        
Query: 262  ccttatcaaaacagttcctctctgctttctgcaggatgtattttgatgacccaacaaaat 321
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1498 ccttatcaaaacagttcctctctgctttctgcaggatgtattttgatgacccaacaaaat 1439

                                                                        
Query: 322  aaccaccaggacgttgattctgggagcgcacttcgactgaagacgaacaagatgggacat 381
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1438 aaccaccaggacgttgattctgggagcgcacttcgactgaagacgaacaagatgggacat 1379

                                                                        
Query: 382  caaacacactcccgctgctggatcttttccttgatatcggagaatttactatggagcctg 441
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1378 caaacacactcccgctgctggatcttttccttgatatcggagaatttactatggagcctg 1319

                                                                        
Query: 442  tgtcttccatctttgaggccttgatcacatcaacacaaatggtctgtttatttaagcccg 501
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1318 tgtcttccatctttgaggccttgatcacatcaacacaaatggtctgtttatttaagcccg 1259

                      
Query: 502  tcagttcctt 511
            ||||||||||
Sbjct: 1258 tcagttcctt 1249



 Score =  264 bits (133), Expect = 3e-67
 Identities = 133/133 (100%)
 Strand = Plus / Minus

                                                                        
Query: 132  gatcctagtgcggcgcttgtccactccattgttcagccgtacagtcttcacgatcaccct 191
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2686 gatcctagtgcggcgcttgtccactccattgttcagccgtacagtcttcacgatcaccct 2627

                                                                        
Query: 192  tgtgaggcggcaggtctcttggatgctctcgaggtgtttgtaccactgtgggcactgtca 251
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2626 tgtgaggcggcaggtctcttggatgctctcgaggtgtttgtaccactgtgggcactgtca 2567

                         
Query: 252  tcgtcttctgcct 264
            |||||||||||||
Sbjct: 2566 tcgtcttctgcct 2554

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>gb|DQ201156.1| Hordeum vulgare subsp. vulgare cultivar Morex cryptochrome 2 (Cry2)
            gene, partial cds
          Length = 2735

 Score =  496 bits (250), Expect = e-137
 Identities = 250/250 (100%)
 Strand = Plus / Minus

                                                                        
Query: 262  ccttatcaaaacagttcctctctgctttctgcaggatgtattttgatgacccaacaaaat 321
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1499 ccttatcaaaacagttcctctctgctttctgcaggatgtattttgatgacccaacaaaat 1440

                                                                        
Query: 322  aaccaccaggacgttgattctgggagcgcacttcgactgaagacgaacaagatgggacat 381
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1439 aaccaccaggacgttgattctgggagcgcacttcgactgaagacgaacaagatgggacat 1380

                                                                        
Query: 382  caaacacactcccgctgctggatcttttccttgatatcggagaatttactatggagcctg 441
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1379 caaacacactcccgctgctggatcttttccttgatatcggagaatttactatggagcctg 1320

                                                                        
Query: 442  tgtcttccatctttgaggccttgatcacatcaacacaaatggtctgtttatttaagcccg 501
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1319 tgtcttccatctttgaggccttgatcacatcaacacaaatggtctgtttatttaagcccg 1260

                      
Query: 502  tcagttcctt 511
            ||||||||||
Sbjct: 1259 tcagttcctt 1250



 Score =  264 bits (133), Expect = 3e-67
 Identities = 133/133 (100%)
 Strand = Plus / Minus

                                                                        
Query: 132  gatcctagtgcggcgcttgtccactccattgttcagccgtacagtcttcacgatcaccct 191
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2735 gatcctagtgcggcgcttgtccactccattgttcagccgtacagtcttcacgatcaccct 2676

                                                                        
Query: 192  tgtgaggcggcaggtctcttggatgctctcgaggtgtttgtaccactgtgggcactgtca 251
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2675 tgtgaggcggcaggtctcttggatgctctcgaggtgtttgtaccactgtgggcactgtca 2616

                         
Query: 252  tcgtcttctgcct 264
            |||||||||||||
Sbjct: 2615 tcgtcttctgcct 2603

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>gb|DQ201155.1| Hordeum vulgare subsp. vulgare cultivar Dicktoo cryptochrome 2 (Cry2)
            gene, partial cds
          Length = 2662

 Score =  496 bits (250), Expect = e-137
 Identities = 250/250 (100%)
 Strand = Plus / Minus

                                                                        
Query: 262  ccttatcaaaacagttcctctctgctttctgcaggatgtattttgatgacccaacaaaat 321
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1499 ccttatcaaaacagttcctctctgctttctgcaggatgtattttgatgacccaacaaaat 1440

                                                                        
Query: 322  aaccaccaggacgttgattctgggagcgcacttcgactgaagacgaacaagatgggacat 381
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1439 aaccaccaggacgttgattctgggagcgcacttcgactgaagacgaacaagatgggacat 1380

                                                                        
Query: 382  caaacacactcccgctgctggatcttttccttgatatcggagaatttactatggagcctg 441
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1379 caaacacactcccgctgctggatcttttccttgatatcggagaatttactatggagcctg 1320

                                                                        
Query: 442  tgtcttccatctttgaggccttgatcacatcaacacaaatggtctgtttatttaagcccg 501
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1319 tgtcttccatctttgaggccttgatcacatcaacacaaatggtctgtttatttaagcccg 1260

                      
Query: 502  tcagttcctt 511
            ||||||||||
Sbjct: 1259 tcagttcctt 1250



 Score =  264 bits (133), Expect = 3e-67
 Identities = 133/133 (100%)
 Strand = Plus / Minus

                                                                        
Query: 132  gatcctagtgcggcgcttgtccactccattgttcagccgtacagtcttcacgatcaccct 191
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2662 gatcctagtgcggcgcttgtccactccattgttcagccgtacagtcttcacgatcaccct 2603

                                                                        
Query: 192  tgtgaggcggcaggtctcttggatgctctcgaggtgtttgtaccactgtgggcactgtca 251
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2602 tgtgaggcggcaggtctcttggatgctctcgaggtgtttgtaccactgtgggcactgtca 2543

                         
Query: 252  tcgtcttctgcct 264
            |||||||||||||
Sbjct: 2542 tcgtcttctgcct 2530

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>ref|XM_466830.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2604

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 68/81 (83%)
 Strand = Plus / Minus

                                                                        
Query: 401  ggatcttttccttgatatcggagaatttactatggagcctgtgtcttccatctttgaggc 460
            ||||||||||||||||| ||| || ||| |||  ||||  ||  ||||||||||||||| 
Sbjct: 2101 ggatcttttccttgataccggtgagtttgctacagagctcgttgcttccatctttgagga 2042

                                 
Query: 461  cttgatcacatcaacacaaat 481
            | |||||| ||||||||||||
Sbjct: 2041 cctgatcatatcaacacaaat 2021

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>ref|XM_466829.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2549

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 68/81 (83%)
 Strand = Plus / Minus

                                                                        
Query: 401  ggatcttttccttgatatcggagaatttactatggagcctgtgtcttccatctttgaggc 460
            ||||||||||||||||| ||| || ||| |||  ||||  ||  ||||||||||||||| 
Sbjct: 2179 ggatcttttccttgataccggtgagtttgctacagagctcgttgcttccatctttgagga 2120

                                 
Query: 461  cttgatcacatcaacacaaat 481
            | |||||| ||||||||||||
Sbjct: 2119 cctgatcatatcaacacaaat 2099

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>ref|XM_506872.1| PREDICTED Oryza sativa (japonica cultivar-group), B1215B07.27-1 mRNA
          Length = 2620

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 68/81 (83%)
 Strand = Plus / Minus

                                                                        
Query: 401  ggatcttttccttgatatcggagaatttactatggagcctgtgtcttccatctttgaggc 460
            ||||||||||||||||| ||| || ||| |||  ||||  ||  ||||||||||||||| 
Sbjct: 2192 ggatcttttccttgataccggtgagtttgctacagagctcgttgcttccatctttgagga 2133

                                 
Query: 461  cttgatcacatcaacacaaat 481
            | |||||| ||||||||||||
Sbjct: 2132 cctgatcatatcaacacaaat 2112

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 68/81 (83%)
 Strand = Plus / Minus

                                                                            
Query: 401      ggatcttttccttgatatcggagaatttactatggagcctgtgtcttccatctttgaggc 460
                ||||||||||||||||| ||| || ||| |||  ||||  ||  ||||||||||||||| 
Sbjct: 24939336 ggatcttttccttgataccggtgagtttgctacagagctcgttgcttccatctttgagga 24939277

                                     
Query: 461      cttgatcacatcaacacaaat 481
                | |||||| ||||||||||||
Sbjct: 24939276 cctgatcatatcaacacaaat 24939256

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>emb|AJ490523.1|OSA490523 Oryza sativa (indica cultivar-group) cry 2 gene for cryptochrome 2,
            exons 1-6
          Length = 8001

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 68/81 (83%)
 Strand = Plus / Minus

                                                                        
Query: 401  ggatcttttccttgatatcggagaatttactatggagcctgtgtcttccatctttgaggc 460
            ||||||||||||||||| ||| || ||| |||  ||||  ||  ||||||||||||||| 
Sbjct: 6402 ggatcttttccttgataccggtgagtttgctacagagctcgttgcttccatctttgagga 6343

                                 
Query: 461  cttgatcacatcaacacaaat 481
            | |||||| ||||||||||||
Sbjct: 6342 cctgatcatatcaacacaaat 6322

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>emb|AJ298877.1|OSA298877 Oryza sativa cry2 gene for cryptochrome 2
          Length = 2477

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 68/81 (83%)
 Strand = Plus / Minus

                                                                        
Query: 401  ggatcttttccttgatatcggagaatttactatggagcctgtgtcttccatctttgaggc 460
            ||||||||||||||||| ||| || ||| |||  ||||  ||  ||||||||||||||| 
Sbjct: 2031 ggatcttttccttgataccggtgagtttgctacagagctcgttgcttccatctttgagga 1972

                                 
Query: 461  cttgatcacatcaacacaaat 481
            | |||||| ||||||||||||
Sbjct: 1971 cctgatcatatcaacacaaat 1951

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>emb|AJ298876.1|OSA298876 Oryza sativa partial cry2 gene for Cryptochrome 2
          Length = 1545

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 68/81 (83%)
 Strand = Plus / Minus

                                                                        
Query: 401  ggatcttttccttgatatcggagaatttactatggagcctgtgtcttccatctttgaggc 460
            ||||||||||||||||| ||| || ||| |||  ||||  ||  ||||||||||||||| 
Sbjct: 1101 ggatcttttccttgataccggtgagtttgctacagagctcgttgcttccatctttgagga 1042

                                 
Query: 461  cttgatcacatcaacacaaat 481
            | |||||| ||||||||||||
Sbjct: 1041 cctgatcatatcaacacaaat 1021

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>dbj|AP006523.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:B1215B07
          Length = 165957

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 68/81 (83%)
 Strand = Plus / Minus

                                                                          
Query: 401    ggatcttttccttgatatcggagaatttactatggagcctgtgtcttccatctttgaggc 460
              ||||||||||||||||| ||| || ||| |||  ||||  ||  ||||||||||||||| 
Sbjct: 100619 ggatcttttccttgataccggtgagtttgctacagagctcgttgcttccatctttgagga 100560

                                   
Query: 461    cttgatcacatcaacacaaat 481
              | |||||| ||||||||||||
Sbjct: 100559 cctgatcatatcaacacaaat 100539

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>dbj|AK099334.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033020H02, full
            insert sequence
          Length = 2548

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 68/81 (83%)
 Strand = Plus / Minus

                                                                        
Query: 401  ggatcttttccttgatatcggagaatttactatggagcctgtgtcttccatctttgaggc 460
            ||||||||||||||||| ||| || ||| |||  ||||  ||  ||||||||||||||| 
Sbjct: 2178 ggatcttttccttgataccggtgagtttgctacagagctcgttgcttccatctttgagga 2119

                                 
Query: 461  cttgatcacatcaacacaaat 481
            | |||||| ||||||||||||
Sbjct: 2118 cctgatcatatcaacacaaat 2098

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>dbj|AK068394.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013149M17, full
            insert sequence
          Length = 2604

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 68/81 (83%)
 Strand = Plus / Minus

                                                                        
Query: 401  ggatcttttccttgatatcggagaatttactatggagcctgtgtcttccatctttgaggc 460
            ||||||||||||||||| ||| || ||| |||  ||||  ||  ||||||||||||||| 
Sbjct: 2101 ggatcttttccttgataccggtgagtttgctacagagctcgttgcttccatctttgagga 2042

                                 
Query: 461  cttgatcacatcaacacaaat 481
            | |||||| ||||||||||||
Sbjct: 2041 cctgatcatatcaacacaaat 2021

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>dbj|AK065669.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013042O16, full
            insert sequence
          Length = 2620

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 68/81 (83%)
 Strand = Plus / Minus

                                                                        
Query: 401  ggatcttttccttgatatcggagaatttactatggagcctgtgtcttccatctttgaggc 460
            ||||||||||||||||| ||| || ||| |||  ||||  ||  ||||||||||||||| 
Sbjct: 2192 ggatcttttccttgataccggtgagtttgctacagagctcgttgcttccatctttgagga 2133

                                 
Query: 461  cttgatcacatcaacacaaat 481
            | |||||| ||||||||||||
Sbjct: 2132 cctgatcatatcaacacaaat 2112

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>dbj|AB103094.1| Oryza sativa (japonica cultivar-group) OsCRY2 mRNA for cryptochrome
            2, complete cds
          Length = 2184

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 68/81 (83%)
 Strand = Plus / Minus

                                                                        
Query: 401  ggatcttttccttgatatcggagaatttactatggagcctgtgtcttccatctttgaggc 460
            ||||||||||||||||| ||| || ||| |||  ||||  ||  ||||||||||||||| 
Sbjct: 1821 ggatcttttccttgataccggtgagtttgctacagagctcgttgcttccatctttgagga 1762

                                 
Query: 461  cttgatcacatcaacacaaat 481
            | |||||| ||||||||||||
Sbjct: 1761 cctgatcatatcaacacaaat 1741

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>gb|AC150574.2| Bos taurus  BAC CH240-237H4 (Children's Hospital Oakland Research
             Institute Bovine BAC Library (male)) complete sequence
          Length = 142758

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 273   cagttcctctctgctttctgc 293
             |||||||||||||||||||||
Sbjct: 78088 cagttcctctctgctttctgc 78108

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>gb|AC022919.8| Homo sapiens chromosome 18, clone RP11-46D1, complete sequence
          Length = 159749

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 436   agcctgtgtcttccatctttgaggc 460
             |||||||||||||||||| ||||||
Sbjct: 91436 agcctgtgtcttccatctctgaggc 91412

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>dbj|AP005138.3| Homo sapiens genomic DNA, chromosome 18 clone:RP11-92G19, complete
              sequence
          Length = 157568

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 290    ctgcaggatgtattttgatga 310
              |||||||||||||||||||||
Sbjct: 138960 ctgcaggatgtattttgatga 138980

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>gb|AY986945.1| Hypocrella discoidea strain BCC 2097 translation elongation factor
           1-alpha (EF1-alpha) gene, partial cds
          Length = 918

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 402 gatcttttccttgatatcggagaatttac 430
           ||||||||||||||| |||| ||||||||
Sbjct: 801 gatcttttccttgatctcggcgaatttac 773

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>dbj|AP005380.2| Homo sapiens genomic DNA, chromosome 18 clone:RP11-190I17, complete
             sequence
          Length = 154315

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 290   ctgcaggatgtattttgatga 310
             |||||||||||||||||||||
Sbjct: 35974 ctgcaggatgtattttgatga 35994

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>gb|AC149230.2| Pan troglodytes BAC clone CH251-557H16 from 7, complete sequence
          Length = 157879

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 93     tgtacaaaattttcttataatgag 116
              |||||||||||||||||| |||||
Sbjct: 146887 tgtacaaaattttcttatgatgag 146910

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>gb|DQ168727.1| Cyanauges maculatus voucher CB0433 elongation factor-1 alpha gene,
           partial cds
          Length = 1058

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 405 cttttccttgatatcggagaattt 428
           |||||||||||| |||||||||||
Sbjct: 906 cttttccttgatttcggagaattt 883

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>gb|DQ168706.1| Lagenosoma sp. CB0403 elongation factor-1 alpha gene, partial cds
          Length = 1058

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 405 cttttccttgatatcggagaattt 428
           |||||||||||| |||||||||||
Sbjct: 906 cttttccttgatctcggagaattt 883

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>gb|AC073101.7| Homo sapiens BAC clone RP11-445E22 from 7, complete sequence
          Length = 96699

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 93    tgtacaaaattttcttataatgag 116
             |||||||||||||||||| |||||
Sbjct: 39247 tgtacaaaattttcttatgatgag 39270

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>ref|XM_445571.1| Candida glabrata CBS138, CAGL0D03586g partial mRNA
          Length = 351

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 457 aggccttgatcacatcaaca 476
           ||||||||||||||||||||
Sbjct: 148 aggccttgatcacatcaaca 129

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>gb|AY358159.1| Homo sapiens clone DNA161000 TCOM (UNQ6123) mRNA, complete cds
          Length = 1868

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 435 gagcctgtgtcttccatctt 454
           ||||||||||||||||||||
Sbjct: 378 gagcctgtgtcttccatctt 359

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>emb|AL138930.15| Human DNA sequence from clone RP11-528G1 on chromosome 1 Contains the
             SLAMF6 gene for SLAM family member 6, the CD84 gene for
             CD84 antigen (leukocyte antigen), a novel gene and the 3'
             end of the SLAMF1 gene for signaling lymphocytic
             activation molecule family member 1, complete sequence
          Length = 175386

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 435   gagcctgtgtcttccatctt 454
             ||||||||||||||||||||
Sbjct: 56789 gagcctgtgtcttccatctt 56808

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>gb|AC134516.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OJA1208D02,
             complete sequence
          Length = 131922

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 305   tgatgacccaacaaaataac 324
             ||||||||||||||||||||
Sbjct: 18793 tgatgacccaacaaaataac 18812

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>emb|CR380950.1| Candida glabrata strain CBS138 chromosome D complete sequence
          Length = 651701

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 457    aggccttgatcacatcaaca 476
              ||||||||||||||||||||
Sbjct: 362893 aggccttgatcacatcaaca 362912

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>emb|AJ439353.1|AGA439353 Anopheles gambiae BAC clone 30E5
          Length = 167014

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 220    tcgaggtgtttgtaccactgtggg 243
              |||||| |||||||||||||||||
Sbjct: 106628 tcgaggagtttgtaccactgtggg 106651

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>emb|AL832854.1|HSM804165 Homo sapiens mRNA; cDNA DKFZp667L0225 (from clone DKFZp667L0225)
          Length = 2718

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 435 gagcctgtgtcttccatctt 454
           ||||||||||||||||||||
Sbjct: 368 gagcctgtgtcttccatctt 349

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>gb|AC101986.10| Mus musculus chromosome 7, clone RP24-353K18, complete sequence
          Length = 187803

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 436   agcctgtgtcttccatcttt 455
             ||||||||||||||||||||
Sbjct: 24292 agcctgtgtcttccatcttt 24273

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>gb|AC158574.6| Mus musculus chromosome 7, clone RP24-275O6, complete sequence
          Length = 160525

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 436   agcctgtgtcttccatcttt 455
             ||||||||||||||||||||
Sbjct: 60118 agcctgtgtcttccatcttt 60137

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>gb|AC154210.2| Mus musculus BAC clone RP24-113C3 from chromosome 13, complete sequence
          Length = 193176

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 276   ttcctctctgctttctgcag 295
             ||||||||||||||||||||
Sbjct: 57561 ttcctctctgctttctgcag 57542

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>gb|AC011468.8| Homo sapiens chromosome 19 clone CTC-471J1, complete sequence
          Length = 177444

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 99    aaattttcttataatgagaa 118
             ||||||||||||||||||||
Sbjct: 60731 aaattttcttataatgagaa 60712

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>dbj|AK125624.1| Homo sapiens cDNA FLJ43636 fis, clone SPLEN2037722, weakly  similar
           to Mus musculus lymphocyte antigen 108 (Ly108)
          Length = 2751

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 435 gagcctgtgtcttccatctt 454
           ||||||||||||||||||||
Sbjct: 387 gagcctgtgtcttccatctt 368

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>gb|AC107314.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare clone
             OJ1208D02 from chromosome 10, complete sequence
          Length = 120132

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 305   tgatgacccaacaaaataac 324
             ||||||||||||||||||||
Sbjct: 78925 tgatgacccaacaaaataac 78944

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>ref|NM_052931.3| Homo sapiens SLAM family member 6 (SLAMF6), mRNA
          Length = 2776

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 435 gagcctgtgtcttccatctt 454
           ||||||||||||||||||||
Sbjct: 377 gagcctgtgtcttccatctt 358

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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 305      tgatgacccaacaaaataac 324
                ||||||||||||||||||||
Sbjct: 11210805 tgatgacccaacaaaataac 11210824

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>gb|AY392423.2| Rhodococcus sp. P400 rubredoxin (rub1), putative naphthalene
             degradation regulator protein (narR1), putative
             naphthalene degradation regulator protein (narR2),
             hypothetical protein, naphthalene dioxygenase large
             subunit (narAa), naphthalene dioxygenase small subunit
             (narAb), cis-naphthalene dihydrodiol dehydrogenase (narB),
             putative aldolase (narC), and putative oxygenase gene
             (oxiA) genes, complete cds
          Length = 12766

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 139   gtgcggcgcttgtccactcc 158
             ||||||||||||||||||||
Sbjct: 10670 gtgcggcgcttgtccactcc 10651

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>gb|BC090928.1| Homo sapiens SLAM family member 6, mRNA (cDNA clone MGC:104953
           IMAGE:3066534), complete cds
          Length = 3772

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 435 gagcctgtgtcttccatctt 454
           ||||||||||||||||||||
Sbjct: 368 gagcctgtgtcttccatctt 349

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>ref|XM_321547.2| Anopheles gambiae str. PEST ENSANGP00000017407 (ENSANGG00000014918),
            partial mRNA
          Length = 2907

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 220  tcgaggtgtttgtaccactgtggg 243
            |||||| |||||||||||||||||
Sbjct: 2743 tcgaggagtttgtaccactgtggg 2720

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>emb|AJ277141.1|HSA277141 Homo sapiens mRNA for activating NK receptor (KALI gene)
          Length = 2728

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 435 gagcctgtgtcttccatctt 454
           ||||||||||||||||||||
Sbjct: 329 gagcctgtgtcttccatctt 310

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>emb|AJ306388.1|HSA306388 Homo sapiens mRNA for NTB-A receptor (KALI b gene)
          Length = 1042

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 435 gagcctgtgtcttccatctt 454
           ||||||||||||||||||||
Sbjct: 326 gagcctgtgtcttccatctt 307

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>emb|BX842684.4| Zebrafish DNA sequence from clone DKEY-33I22 in linkage group 20,
            complete sequence
          Length = 140982

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 89   gaaatgtacaaaattttctt 108
            ||||||||||||||||||||
Sbjct: 8619 gaaatgtacaaaattttctt 8638

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>dbj|AP003304.2| Homo sapiens genomic DNA, chromosome 11q clone:RP11-104B12, complete
              sequences
          Length = 182218

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 436    agcctgtgtcttccatcttt 455
              ||||||||||||||||||||
Sbjct: 130164 agcctgtgtcttccatcttt 130183

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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 305      tgatgacccaacaaaataac 324
                ||||||||||||||||||||
Sbjct: 11217245 tgatgacccaacaaaataac 11217264

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>gb|AC002366.1|AC002366 Human Xp22 BAC CT-285I15 (from CalTech/Research Genetics) , PAC
              RPCI1-27C22 (from Roswell Park Cancer Center), and Cosmid
              U35B5 (from Lawrence Livermore), complete sequence
          Length = 259202

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 467    cacatcaacacaaatggtct 486
              ||||||||||||||||||||
Sbjct: 193497 cacatcaacacaaatggtct 193478

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>emb|AL929275.8| Mouse DNA sequence from clone RP23-65P13 on chromosome 2, complete
             sequence
          Length = 197356

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 270   aaacagttcctctctgctttctgc 293
             ||||||||||| ||||||||||||
Sbjct: 47459 aaacagttcctttctgctttctgc 47482

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>emb|AL671520.6| Mouse DNA sequence from clone RP23-99G21 on chromosome 4, complete
              sequence
          Length = 213303

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 311    cccaacaaaataaccaccag 330
              ||||||||||||||||||||
Sbjct: 183681 cccaacaaaataaccaccag 183700


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,496,525
Number of Sequences: 3902068
Number of extensions: 4496525
Number of successful extensions: 87674
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 87506
Number of HSP's gapped (non-prelim): 156
length of query: 511
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 488
effective length of database: 17,143,297,704
effective search space: 8365929279552
effective search space used: 8365929279552
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result