>VL96_IRV1 (P22856) L96 protein|
          Length = 867

 Score = 26.9 bits (58), Expect(2) = 0.82
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -1

Query: 539 SPTLXXRSPSIRPPXVGSTXEQPXAPPGNASP 444
           SP++  +SPS+RP       + P   P + SP
Sbjct: 512 SPSVRSKSPSVRPKSPSVRPKSPSVRPRSKSP 543



 Score = 24.3 bits (51), Expect(2) = 0.82
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = -3

Query: 399 SXTPPATSXXIRPPSVXSTPEQPDASPGNRITPWPCSSLPXA 274
           S  P + S  +RP S    P  PD S    IT  P  + P +
Sbjct: 535 SVRPRSKSPSVRPKSPSVRPPPPDPSNSPSITVDPSVTPPSS 576

>SMCA4_HUMAN (P51532) Probable global transcription activator SNF2L4 (EC|
           3.6.1.-) (ATP-dependent helicase SMARCA4) (SNF2-beta)
           (BRG-1 protein) (Mitotic growth and transcription
           activator) (Brahma protein homolog 1) (SWI/SNF-related
           matrix-associated actin
          Length = 1647

 Score = 29.6 bits (65), Expect(2) = 1.3
 Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 11/53 (20%)
 Frame = -1

Query: 536 PTLXXRSPSIRPPXVGSTXEQPX-----------APPGNASPHGLGAXRLQLP 411
           P +  + P++ PP V +T   P            APP  + PHG+G   +  P
Sbjct: 211 PGMQQQMPTLPPPSVSATGPGPGPGPGPGPGPGPAPPNYSRPHGMGGPNMPPP 263



 Score = 20.8 bits (42), Expect(2) = 1.3
 Identities = 9/24 (37%), Positives = 9/24 (37%), Gaps = 1/24 (4%)
 Frame = -3

Query: 363 PPSVXSTPE-QPDASPGNRITPWP 295
           PP     P   P   PG    PWP
Sbjct: 262 PPGPSGVPPGMPGQPPGGPPKPWP 285

>RANB9_HUMAN (Q96S59) Ran-binding protein 9 (RanBP9) (RanBP7) (Ran-binding|
           protein M) (RanBPM) (BPM90) (BPM-L)
          Length = 729

 Score = 26.9 bits (58), Expect(2) = 1.4
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = -1

Query: 503 PPXVGSTXEQPXAPPGNASPHGLGAXRLQLPLH 405
           PP V +      +P G A   GLGA    L LH
Sbjct: 38  PPAVSAGSSPAGSPGGGAGGEGLGAAAAALLLH 70



 Score = 23.5 bits (49), Expect(2) = 1.4
 Identities = 13/48 (27%), Positives = 15/48 (31%)
 Frame = -3

Query: 423 PXATSPLISXTPPATSXXIRPPSVXSTPEQPDASPGNRITPWPCSSLP 280
           P    P  +  PP       P S  +    P A PG    P P    P
Sbjct: 72  PPPPPPATAAPPPPPPPPPPPASAAAPASGPPAPPGLAAGPGPAGGAP 119

>EXTN_MAIZE (P14918) Extensin precursor (Proline-rich glycoprotein)|
          Length = 267

 Score = 27.3 bits (59), Expect(2) = 1.5
 Identities = 17/58 (29%), Positives = 22/58 (37%)
 Frame = -3

Query: 444 PWPWS*XPXATSPLISXTPPATSXXIRPPSVXSTPEQPDASPGNRITPWPCSSLPXAT 271
           P P +  P    P    TPP  +   +PP+   TP     SP     P P  + P  T
Sbjct: 127 PTPPTYTPSPKPPTPKPTPPTYTPSPKPPTPKPTPPTYTPSPKPPTHPTPKPTPPTYT 184



 Score = 23.1 bits (48), Expect(2) = 1.5
 Identities = 11/35 (31%), Positives = 14/35 (40%)
 Frame = -1

Query: 548 PLISPTLXXRSPSIRPPXVGSTXEQPXAPPGNASP 444
           P   PT    +PS +PP       +P  P    SP
Sbjct: 65  PTPKPTPPTYTPSPKPPATKPPTPKPTPPTYTPSP 99

>PRF1_LYCES (Q00451) 36.4 kDa proline-rich protein|
          Length = 346

 Score = 25.0 bits (53), Expect(2) = 1.9
 Identities = 20/50 (40%), Positives = 21/50 (42%)
 Frame = -3

Query: 450 ITPWPWS*XPXATSPLISXTPPATSXXIRPPSVXSTPEQPDASPGNRITP 301
           ITP P    P  T    S TPP  S  I  P +  TP  P  SP    TP
Sbjct: 157 ITPTPPIVHPPVTPKPPSPTPPIVSPPIVYPPITPTP--PVVSPPIIPTP 204



 Score = 25.0 bits (53), Expect(2) = 1.9
 Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 3/38 (7%)
 Frame = -1

Query: 548 PLISPTLXXRSPSIRPPXV---GSTXEQPXAPPGNASP 444
           P++ P    R P + PP +    ST + P  PP    P
Sbjct: 103 PIVKPPHVPRPPIVHPPPIVSPPSTPKPPKTPPFTPKP 140

>TRX2_MOUSE (O08550) Trithorax homolog 2 (WW domain-binding protein 7)|
           (Fragment)
          Length = 290

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 29/88 (32%), Positives = 35/88 (39%), Gaps = 6/88 (6%)
 Frame = -1

Query: 548 PLISPTLXXRSPSIRPPXVGSTXEQPXAPPGNASPHGLGAXRLQ------LPLH*SVXRL 387
           P+ SP      PS  PP   S    P +PP   SP    A   Q      +P   S  R 
Sbjct: 46  PVPSPPPPLPPPSTSPPPPASPLPPPVSPPPPLSPPPYPAPEKQEESPPLVPATCSRKRG 105

Query: 386 RPHLXXSVRQALXPRRSSRMRRQGTASP 303
           RP L  S R     R ++R   +GT SP
Sbjct: 106 RPPLTPSQR---AEREAARSGPEGTLSP 130

>VG72_ICHV1 (Q00103) Hypothetical gene 72 protein|
          Length = 1350

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
 Frame = -3

Query: 441  WPWS*XPXATSPLISXTPPATSXXIRPPS--VXSTPEQPDASPGNR 310
            W  +  P         T PAT   I PPS  V + P  P A+PG R
Sbjct: 866  WELTETPSGNVVATGFTTPATPTIINPPSPHVFAVPMPPPANPGKR 911

>ZN692_MOUSE (Q3U381) Zinc finger protein 692|
          Length = 531

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = -3

Query: 447 TPWPWS*XPXATSPLISXTPPATSXXIRPPSVXSTPEQPDASPGNRITPWPCSSL 283
           +PW +S  P  + P +   PP+         V  TP++ + SP     P PC+ L
Sbjct: 210 SPWTYSSSPDDSEPDVPRPPPSP--------VTHTPKEGEVSPVPATLPTPCAVL 256

>ACRO_PIG (P08001) Acrosin precursor (EC 3.4.21.10) (53 kDa fucose-binding|
           protein) [Contains: Acrosin light chain; Acrosin heavy
           chain]
          Length = 415

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = -3

Query: 423 PXATSPLISXTPPATSXXIRPPSVXSTPEQPDASPGNRITP 301
           P  ++P     PP+    +RPP     P  P   PG+R  P
Sbjct: 301 PRPSTPAPPVRPPSVQTPVRPPWYFQRPPGPSQQPGSRPRP 341

>BAT3_HUMAN (P46379) Large proline-rich protein BAT3 (HLA-B-associated transcript|
            3) (Protein G3)
          Length = 1132

 Score = 30.0 bits (66), Expect = 4.9
 Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 5/66 (7%)
 Frame = +1

Query: 136  GADRSNPQPSCSRVHXATGQT-----DRGTDP*RAEQSTNPAAGXTDRWRGSXRQ*ATRP 300
            GA+R++P+P       A G T      RG  P        P  G  D   G+  +  T P
Sbjct: 959  GAERASPEPQRENASPAPGTTAEEAMSRGPPP-------APEGGSRDEQDGASAE--TEP 1009

Query: 301  WGDAVP 318
            W  AVP
Sbjct: 1010 WAAAVP 1015

>RIMS2_HUMAN (Q9UQ26) Regulating synaptic membrane exocytosis protein 2|
            (Rab3-interacting molecule 2) (RIM 2)
          Length = 1411

 Score = 30.0 bits (66), Expect = 4.9
 Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = +2

Query: 101  PQPSCSRMHPATG--QTDRTRSPVAPACXERRGKQI 202
            P P+ SR HP TG  QT  + +PVA     RRG+Q+
Sbjct: 1131 PSPALSRSHPRTGSVQTSPSSTPVA----GRRGRQL 1162

>EXTN_TOBAC (P13983) Extensin precursor (Cell wall hydroxyproline-rich|
           glycoprotein)
          Length = 620

 Score = 29.3 bits (64), Expect = 8.3
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = -3

Query: 447 TPWPWS*XPXATSPLISXTPPATSXXIRP-PSVXSTPEQPDASPGNRITPWPCSSLP 280
           +P P +  P   SP+ S  PPA S    P P+   +P  P  SP    +P P + LP
Sbjct: 283 SPPPPTYSPPPPSPIYSPPPPAYSPSPPPTPTPTFSPPPPAYSPPPTYSPPPPTYLP 339

>HD_HUMAN (P42858) Huntingtin (Huntington disease protein) (HD protein)|
          Length = 3144

 Score = 29.3 bits (64), Expect = 8.3
 Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
 Frame = +3

Query: 96   STRSPAALACIQRRGRQIEPAAQ----LLPRAXSDGANRSRHRPMTG*AVNESGSGTXGS 263
            S  +P +L+ I+R+G++ EP  Q    L P+  S+ +  SR    +G  V  S S + GS
Sbjct: 1173 SLTNPPSLSPIRRKGKEKEPGEQASVPLSPKKGSEASAASRQSDTSG-PVTTSKSSSLGS 1231

>MUCDL_RAT (Q9JIK1) Mucin and cadherin-like protein precursor|
           (Mu-protocadherin) (GP100)
          Length = 862

 Score = 29.3 bits (64), Expect = 8.3
 Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = -3

Query: 423 PXATSPLISXTP-PATSXXIRPPSVXSTPEQPDASPGNRITPWPCSSLPXAT 271
           P   S   + TP P TS  + P    ST  QP    G+  TP P +S P  T
Sbjct: 599 PATPSGSSTQTPRPGTSQPMVPTPGASTSSQPATPSGSTQTPKPGTSQPTTT 650

>IF2_STRAW (Q82K53) Translation initiation factor IF-2|
          Length = 1046

 Score = 29.3 bits (64), Expect = 8.3
 Identities = 42/149 (28%), Positives = 49/149 (32%), Gaps = 4/149 (2%)
 Frame = +1

Query: 70  PPSPQFLINQPAAQLLSHASSD---GADRSNPQPSCSRVHXATGQTDRGTDP*RAEQSTN 240
           P +P+F     A    + A+S    GA    P+P  +R     GQ   G       Q   
Sbjct: 127 PAAPEFTAPPSAPAAPAAAASGPRPGARPGAPKPGGARP-ATPGQGQGG-------QVRG 178

Query: 241 PAAGXTDRWRGSXRQ*ATRPWGDAV-PWRRIRLLRRGXNAWXXXXXXXXXXXXTDQWRGS 417
                 DR     RQ A RP G A  P  R    R G N +                 G 
Sbjct: 179 ERTDRGDRGDRGDRQGAARPGGQAPRPGARPAGPRPGNNPFTSGGST-----------GM 227

Query: 418 XRRLAPRPWGDAFPGGAXGCSXVDPTHGG 504
            R  APRP G   PGGA       P   G
Sbjct: 228 ARPQAPRPGGAPRPGGAGAPGGPRPQGAG 256

>IAA5_ORYSA (Q59AF3) Auxin-responsive protein IAA5 (Indoleacetic acid-induced|
           protein 5)
          Length = 271

 Score = 29.3 bits (64), Expect = 8.3
 Identities = 25/66 (37%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
 Frame = -1

Query: 359 QALXPRRSSRMRRQGTASPHG-LVAHCLXL-PLHRSVCPAAG---FVDCSARHGSVPRSV 195
           +A  PR + R+   G+ SP   +VA  L L PL  +   AA    F D S RHG+   SV
Sbjct: 36  EARGPRLTLRLGLPGSESPEREVVAAGLTLGPLPPTTTKAASKRAFPDSSPRHGASSGSV 95

Query: 194 CPVAXC 177
              A C
Sbjct: 96  AAAAAC 101


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,786,393
Number of Sequences: 219361
Number of extensions: 1567709
Number of successful extensions: 5780
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 5096
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5752
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4815021120
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)