ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd26a17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC167978.4| Mus musculus BAC clone RP23-72M20 from chromosome... 42 2.0
2gb|BT018632.1| Zea mays clone EL01N0503G08.d mRNA sequence 42 2.0
3emb|BX294149.1| Pirellula sp. strain 1 complete genome; segment ... 42 2.0
4gb|BC029705.1| Mus musculus suprabasin, mRNA (cDNA clone IMAGE:5... 42 2.0
5gb|AC000353.27| Homo sapiens Chromosome 11q13 BAC Clone 18h3, co... 42 2.0
6gb|AC139133.11| Mus musculus chromosome 15, clone RP23-412G9, co... 42 2.0
7gb|AY220877.1| Homo sapiens requiem, apoptosis response zinc fin... 42 2.0
8dbj|AP000944.4| Homo sapiens genomic DNA, chromosome 11 clone:RP... 42 2.0
9gb|AC165340.3| Mus musculus BAC clone RP24-63G4 from chromosome ... 42 2.0
10gb|AC099065.2| Homo sapiens chromosome 1 clone RP11-105I12, comp... 40 7.8
11dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.8
12dbj|AP003803.5| Oryza sativa (japonica cultivar-group) genomic D... 40 7.8
13emb|AL591946.14| Mouse DNA sequence from clone RP23-290M7 on chr... 40 7.8

>gb|AC167978.4| Mus musculus BAC clone RP23-72M20 from chromosome 7, complete
            sequence
          Length = 214959

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 68   aacccccttctccccagtttc 88
            |||||||||||||||||||||
Sbjct: 1490 aacccccttctccccagtttc 1510



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>gb|BT018632.1| Zea mays clone EL01N0503G08.d mRNA sequence
          Length = 1714

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 78  tccccagtttctgataaatca 98
           |||||||||||||||||||||
Sbjct: 827 tccccagtttctgataaatca 847



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>emb|BX294149.1| Pirellula sp. strain 1 complete genome; segment 17/24
          Length = 314250

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 529   agcgtcggactgatcaatgga 549
             |||||||||||||||||||||
Sbjct: 10950 agcgtcggactgatcaatgga 10970



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>gb|BC029705.1| Mus musculus suprabasin, mRNA (cDNA clone IMAGE:5007631), partial
           cds
          Length = 2476

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 68  aacccccttctccccagtttc 88
           |||||||||||||||||||||
Sbjct: 882 aacccccttctccccagtttc 862



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>gb|AC000353.27| Homo sapiens Chromosome 11q13 BAC Clone 18h3, complete sequence
          Length = 233089

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 99     acccgcagcccagctgctctc 119
              |||||||||||||||||||||
Sbjct: 142073 acccgcagcccagctgctctc 142053



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>gb|AC139133.11| Mus musculus chromosome 15, clone RP23-412G9, complete sequence
          Length = 182517

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 63     acataaacccccttctccccagttt 87
              |||||| ||||||||||||||||||
Sbjct: 104184 acataagcccccttctccccagttt 104208



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>gb|AY220877.1| Homo sapiens requiem, apoptosis response zinc finger gene (REQ) gene,
             complete cds
          Length = 20369

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 99    acccgcagcccagctgctctc 119
             |||||||||||||||||||||
Sbjct: 20302 acccgcagcccagctgctctc 20282



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>dbj|AP000944.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-867O8, complete
             sequence
          Length = 219246

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 99    acccgcagcccagctgctctc 119
             |||||||||||||||||||||
Sbjct: 94988 acccgcagcccagctgctctc 94968



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>gb|AC165340.3| Mus musculus BAC clone RP24-63G4 from chromosome 7, complete sequence
          Length = 241077

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 68    aacccccttctccccagtttc 88
             |||||||||||||||||||||
Sbjct: 76864 aacccccttctccccagtttc 76844



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>gb|AC099065.2| Homo sapiens chromosome 1 clone RP11-105I12, complete sequence
          Length = 181253

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 72    cccttctccccagtttctga 91
             ||||||||||||||||||||
Sbjct: 26063 cccttctccccagtttctga 26044



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 52       gattctgttttacataaacc 71
                ||||||||||||||||||||
Sbjct: 23704295 gattctgttttacataaacc 23704314



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>dbj|AP003803.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1060_D03
          Length = 102178

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 52    gattctgttttacataaacc 71
             ||||||||||||||||||||
Sbjct: 48909 gattctgttttacataaacc 48928



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>emb|AL591946.14| Mouse DNA sequence from clone RP23-290M7 on chromosome 15, complete
            sequence
          Length = 188892

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 70   cccccttctccccagtttct 89
            ||||||||||||||||||||
Sbjct: 6062 cccccttctccccagtttct 6081


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,805,358
Number of Sequences: 3902068
Number of extensions: 2805358
Number of successful extensions: 45858
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 45811
Number of HSP's gapped (non-prelim): 47
length of query: 572
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 549
effective length of database: 17,143,297,704
effective search space: 9411670439496
effective search space used: 9411670439496
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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