ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbasd25l16 |
|---|---|
| Clone Library Name | barley_pub |
>PSAL_HORVU (P23993) Photosystem I reaction center subunit XI, chloroplast| precursor (PSI-L) (PSI subunit V) Length = 209 Score = 110 bits (276), Expect(2) = 2e-26 Identities = 57/71 (80%), Positives = 59/71 (83%) Frame = -3 Query: 259 AIXIVSILSVCLTMYGVASFNXGEPSTAXXITLTGRKKEADKLQTAEGWSQXXXXXXXXG 80 AI +VSILSVCLTMYGVASFN GEPSTA +TLTGRKKEADKLQTAEGWSQ G Sbjct: 129 AIGLVSILSVCLTMYGVASFNEGEPSTAPVLTLTGRKKEADKLQTAEGWSQFTGGFFFGG 188 Query: 79 VSGAVWAYFLL 47 VSGAVWAYFLL Sbjct: 189 VSGAVWAYFLL 199 Score = 26.2 bits (56), Expect(2) = 2e-26 Identities = 10/10 (100%), Positives = 10/10 (100%) Frame = -1 Query: 45 YVLDLPYFFK 16 YVLDLPYFFK Sbjct: 200 YVLDLPYFFK 209
>PSAL_CUCSA (Q39654) Photosystem I reaction center subunit XI, chloroplast| precursor (PSI-L) (PSI subunit V) Length = 217 Score = 93.2 bits (230), Expect(2) = 5e-20 Identities = 44/68 (64%), Positives = 52/68 (76%) Frame = -3 Query: 250 IVSILSVCLTMYGVASFNXGEPSTAXXITLTGRKKEADKLQTAEGWSQXXXXXXXXGVSG 71 ++ ILSVCLTMYGVASFN GEPSTA +TLTGRKK D LQTA+GW++ G+SG Sbjct: 140 LIVILSVCLTMYGVASFNEGEPSTAPSLTLTGRKKTPDPLQTADGWAKFSGGFFFGGISG 199 Query: 70 AVWAYFLL 47 +WAYFLL Sbjct: 200 VIWAYFLL 207 Score = 22.3 bits (46), Expect(2) = 5e-20 Identities = 8/10 (80%), Positives = 9/10 (90%) Frame = -1 Query: 45 YVLDLPYFFK 16 YVLDLPY+ K Sbjct: 208 YVLDLPYYVK 217
>PSAL_ARATH (Q9SUI4) Photosystem I reaction center subunit XI, chloroplast| precursor (PSI-L) (PSI subunit V) Length = 219 Score = 86.3 bits (212), Expect(2) = 2e-18 Identities = 40/71 (56%), Positives = 52/71 (73%) Frame = -3 Query: 259 AIXIVSILSVCLTMYGVASFNXGEPSTAXXITLTGRKKEADKLQTAEGWSQXXXXXXXXG 80 A +V ILS+CLT+YG++SF GEPS A +TLTGRKK+ D+LQTA+GW++ G Sbjct: 139 AAGLVVILSMCLTIYGISSFKEGEPSIAPSLTLTGRKKQPDQLQTADGWAKFTGGFFFGG 198 Query: 79 VSGAVWAYFLL 47 +SG WAYFLL Sbjct: 199 ISGVTWAYFLL 209 Score = 23.5 bits (49), Expect(2) = 2e-18 Identities = 9/10 (90%), Positives = 9/10 (90%) Frame = -1 Query: 45 YVLDLPYFFK 16 YVLDLPYF K Sbjct: 210 YVLDLPYFVK 219
>PSAL_SPIOL (Q41385) Photosystem I reaction center subunit XI, chloroplast| precursor (PSI-L) (PSI subunit V) Length = 216 Score = 83.6 bits (205), Expect(2) = 5e-18 Identities = 40/71 (56%), Positives = 51/71 (71%) Frame = -3 Query: 259 AIXIVSILSVCLTMYGVASFNXGEPSTAXXITLTGRKKEADKLQTAEGWSQXXXXXXXXG 80 A +V ILS+CLTMYG+ASF GEPS A +TLTGRKK+ D+LQ+A+GW++ G Sbjct: 136 AAGLVVILSMCLTMYGIASFKEGEPSIAPALTLTGRKKQPDQLQSADGWAKFTGGFFFGG 195 Query: 79 VSGAVWAYFLL 47 VSG WA FL+ Sbjct: 196 VSGVTWACFLM 206 Score = 25.0 bits (53), Expect(2) = 5e-18 Identities = 9/10 (90%), Positives = 10/10 (100%) Frame = -1 Query: 45 YVLDLPYFFK 16 YVLDLPY+FK Sbjct: 207 YVLDLPYYFK 216
>PSAL_PORPU (P51222) Photosystem I reaction center subunit XI (PSI-L) (PSI| subunit V) Length = 153 Score = 45.4 bits (106), Expect = 4e-05 Identities = 28/79 (35%), Positives = 37/79 (46%) Frame = -3 Query: 259 AIXIVSILSVCLTMYGVASFNXGEPSTAXXITLTGRKKEADKLQTAEGWSQXXXXXXXXG 80 ++ ++ IL+ CL+MYG SF R D LQTAEGW Q Sbjct: 82 SVGLIIILTTCLSMYGNVSFT--------------RSDSKDPLQTAEGWGQFTAGFLVGA 127 Query: 79 VSGAVWAYFLLLRARPPIL 23 V G+ +AY LL A P+L Sbjct: 128 VGGSGFAYLLL--ANIPVL 144
>PSAL_GRATL (Q6B8P4) Photosystem I reaction center subunit XI (PSI-L) (PSI| subunit V) Length = 150 Score = 45.1 bits (105), Expect = 5e-05 Identities = 28/79 (35%), Positives = 38/79 (48%) Frame = -3 Query: 259 AIXIVSILSVCLTMYGVASFNXGEPSTAXXITLTGRKKEADKLQTAEGWSQXXXXXXXXG 80 A+ ++ IL+VCL+MYG SF+ + D LQT EGW Q Sbjct: 82 AVGLIIILTVCLSMYGNVSFDKDDAK--------------DLLQTTEGWGQFTAGFLVGA 127 Query: 79 VSGAVWAYFLLLRARPPIL 23 V G+ +AY LL A P+L Sbjct: 128 VGGSGFAYLLL--ANIPVL 144
>PSAL_CYACA (Q9TM17) Photosystem I reaction center subunit XI (PSI-L) (PSI| subunit V) Length = 152 Score = 42.7 bits (99), Expect = 2e-04 Identities = 28/83 (33%), Positives = 38/83 (45%), Gaps = 4/83 (4%) Frame = -3 Query: 259 AIXIVSILSVCLTMYGVASFNXGEPSTAXXITLTGRKKEADKLQTAEGWSQXXXXXXXXG 80 AI ++ I S+ + +YG+ +F+ E + DKLQTA GW Q Sbjct: 82 AIGLIIISSIAMIIYGIVTFDNSENN--------------DKLQTANGWRQLASGFLLGA 127 Query: 79 VSGAVWAYFL----LLRARPPIL 23 V GA +AY L LL PIL Sbjct: 128 VGGAGFAYILLANNLLSTSTPIL 150
>PSAL_GUITH (O78469) Photosystem I reaction center subunit XI (PSI-L) (PSI| subunit V) Length = 152 Score = 42.4 bits (98), Expect = 3e-04 Identities = 21/71 (29%), Positives = 35/71 (49%) Frame = -3 Query: 259 AIXIVSILSVCLTMYGVASFNXGEPSTAXXITLTGRKKEADKLQTAEGWSQXXXXXXXXG 80 A+ ++ I++ CL +YGV SFN + ++LQ+A+GW Q Sbjct: 82 ALGLIIIMAACLAIYGVVSFNTND--------------GGEQLQSAKGWRQFTSGWLVGS 127 Query: 79 VSGAVWAYFLL 47 + GA +AY L+ Sbjct: 128 IGGASFAYILI 138
>PSAL_SYNY3 (P37277) Photosystem I reaction center subunit XI (PSI-L) (PSI| subunit V) Length = 157 Score = 40.8 bits (94), Expect = 0.001 Identities = 23/71 (32%), Positives = 34/71 (47%) Frame = -3 Query: 259 AIXIVSILSVCLTMYGVASFNXGEPSTAXXITLTGRKKEADKLQTAEGWSQXXXXXXXXG 80 A+ ++ + + L+ YG+ +F G + D LQTA+GWSQ G Sbjct: 85 ALALILVATAALSSYGLVTFQ-------------GEQGSGDTLQTADGWSQFAAGFFVGG 131 Query: 79 VSGAVWAYFLL 47 + GA AYFLL Sbjct: 132 MGGAFVAYFLL 142
>PSAL_SYNEL (Q8DGB4) Photosystem I reaction center subunit XI (PSI-L) (PSI| subunit V) Length = 155 Score = 40.0 bits (92), Expect = 0.002 Identities = 22/70 (31%), Positives = 32/70 (45%) Frame = -3 Query: 256 IXIVSILSVCLTMYGVASFNXGEPSTAXXITLTGRKKEADKLQTAEGWSQXXXXXXXXGV 77 I ++ + + CL YG+ SF G S+ D L+T+EGWSQ + Sbjct: 84 IALILVATACLAAYGLVSFQKGGSSS-------------DPLKTSEGWSQFTAGFFVGAM 130 Query: 76 SGAVWAYFLL 47 A A+FLL Sbjct: 131 GSAFVAFFLL 140
>PSAL_SYNEN (P25902) Photosystem I reaction center subunit XI (PSI-L) (PSI| subunit V) Length = 148 Score = 40.0 bits (92), Expect = 0.002 Identities = 22/70 (31%), Positives = 32/70 (45%) Frame = -3 Query: 256 IXIVSILSVCLTMYGVASFNXGEPSTAXXITLTGRKKEADKLQTAEGWSQXXXXXXXXGV 77 I ++ + + CL YG+ SF G S+ D L+T+EGWSQ + Sbjct: 83 IALILVATACLAAYGLVSFQKGGSSS-------------DPLKTSEGWSQFTAGFFVGAM 129 Query: 76 SGAVWAYFLL 47 A A+FLL Sbjct: 130 GSAFVAFFLL 139
>PSAL_SYNP6 (P31084) Photosystem I reaction center subunit XI (PSI-L) (PSI| subunit V) Length = 165 Score = 39.7 bits (91), Expect = 0.002 Identities = 24/69 (34%), Positives = 37/69 (53%) Frame = -3 Query: 256 IXIVSILSVCLTMYGVASFNXGEPSTAXXITLTGRKKEADKLQTAEGWSQXXXXXXXXGV 77 + +V IL+VCL++YG N G +A T+T +L T EGWS+ G+ Sbjct: 82 VGLVVILTVCLSLYG----NAGSGPSAAESTVT-TPNPPQELFTKEGWSEFTSGFILGGL 136 Query: 76 SGAVWAYFL 50 GA +A++L Sbjct: 137 GGAFFAFYL 145
>PSAL_SYNP7 (P95822) Photosystem I reaction center subunit XI (PSI-L) (PSI| subunit V) Length = 166 Score = 39.7 bits (91), Expect = 0.002 Identities = 24/69 (34%), Positives = 37/69 (53%) Frame = -3 Query: 256 IXIVSILSVCLTMYGVASFNXGEPSTAXXITLTGRKKEADKLQTAEGWSQXXXXXXXXGV 77 + +V IL+VCL++YG N G +A T+T +L T EGWS+ G+ Sbjct: 83 VGLVVILTVCLSLYG----NAGSGPSAAESTVT-TPNPPQELFTKEGWSEFTSGFILGGL 137 Query: 76 SGAVWAYFL 50 GA +A++L Sbjct: 138 GGAFFAFYL 146
>PSAL_ANASP (P58577) Photosystem I reaction center subunit XI (PSI-L) (PSI| subunit V) Length = 172 Score = 35.4 bits (80), Expect = 0.039 Identities = 21/70 (30%), Positives = 33/70 (47%) Frame = -3 Query: 259 AIXIVSILSVCLTMYGVASFNXGEPSTAXXITLTGRKKEADKLQTAEGWSQXXXXXXXXG 80 AI +V + ++ L++Y N P+ +T+ D Q+ EGW+ G Sbjct: 98 AIGLVVLFTLALSLYA----NSNPPTALASVTVPN---PPDAFQSKEGWNNFASAFLIGG 150 Query: 79 VSGAVWAYFL 50 + GAV AYFL Sbjct: 151 IGGAVVAYFL 160
>PSAL_ANAVT (P31092) Photosystem I reaction center subunit XI (PSI-L) (PSI| subunit V) Length = 172 Score = 34.7 bits (78), Expect = 0.066 Identities = 21/70 (30%), Positives = 32/70 (45%) Frame = -3 Query: 259 AIXIVSILSVCLTMYGVASFNXGEPSTAXXITLTGRKKEADKLQTAEGWSQXXXXXXXXG 80 AI +V + ++ L++Y N P +T+ D Q+ EGW+ G Sbjct: 98 AIGLVVLFTLSLSLYA----NSNPPKALASVTVPN---PPDAFQSKEGWNNFASAFLIGG 150 Query: 79 VSGAVWAYFL 50 + GAV AYFL Sbjct: 151 IGGAVVAYFL 160
>PSAL_CYAME (Q85FP8) Photosystem I reaction center subunit XI (PSI-L) (PSI| subunit V) Length = 140 Score = 32.7 bits (73), Expect = 0.25 Identities = 19/71 (26%), Positives = 31/71 (43%) Frame = -3 Query: 259 AIXIVSILSVCLTMYGVASFNXGEPSTAXXITLTGRKKEADKLQTAEGWSQXXXXXXXXG 80 AI ++ IL++ + +YG SF ++ L++ +GW Q Sbjct: 82 AIGLIVILTLGMLLYGAVSFT----------------NDSQDLESVDGWRQLASGFLLGA 125 Query: 79 VSGAVWAYFLL 47 V GA +AY LL Sbjct: 126 VGGAGFAYLLL 136
>PSAL_MASLA (O31126) Photosystem I reaction center subunit XI (PSI-L) (PSI| subunit V) Length = 173 Score = 32.3 bits (72), Expect = 0.33 Identities = 23/70 (32%), Positives = 33/70 (47%) Frame = -3 Query: 259 AIXIVSILSVCLTMYGVASFNXGEPSTAXXITLTGRKKEADKLQTAEGWSQXXXXXXXXG 80 A+ ++ IL+ LT+Y N P + T EA Q++EGW+ G Sbjct: 98 ALGLIIILTGALTLYA----NSKPPKPVKSVA-TPNPPEA--FQSSEGWNNFASAFLIGG 150 Query: 79 VSGAVWAYFL 50 + GAV AYFL Sbjct: 151 IGGAVVAYFL 160
>PSAL_ISOGA (Q5ENP6) Photosystem I reaction center subunit XI (PSI-L) (PSI| subunit V) Length = 147 Score = 30.8 bits (68), Expect = 0.95 Identities = 18/71 (25%), Positives = 31/71 (43%) Frame = -3 Query: 259 AIXIVSILSVCLTMYGVASFNXGEPSTAXXITLTGRKKEADKLQTAEGWSQXXXXXXXXG 80 A ++ IL++ LT+YG+ASF + L++++GW Sbjct: 84 AFGLIIILTLALTIYGLASFQD--------------NGVGENLESSKGWRNFTSGFTIGA 129 Query: 79 VSGAVWAYFLL 47 + GA AY +L Sbjct: 130 LGGASVAYLVL 140
>PSAL_ODOSI (P49486) Photosystem I reaction center subunit XI (PSI-L) (PSI| subunit V) Length = 150 Score = 30.8 bits (68), Expect = 0.95 Identities = 16/50 (32%), Positives = 28/50 (56%) Frame = -3 Query: 256 IXIVSILSVCLTMYGVASFNXGEPSTAXXITLTGRKKEADKLQTAEGWSQ 107 I ++ IL++ LT+YGVA+F G+ + + ++ LQT + W Q Sbjct: 83 IGLILILTLGLTIYGVAAFGQGQTT-----------ENSNDLQTKKAWDQ 121
>M3K12_MOUSE (Q60700) Mitogen-activated protein kinase kinase kinase 12 (EC| 2.7.11.25) (Mixed lineage kinase) (Leucine-zipper protein kinase) (ZPK) (Dual leucine zipper bearing kinase) (DLK) (MAPK-upstream kinase) (MUK) Length = 888 Score = 29.3 bits (64), Expect = 2.8 Identities = 17/33 (51%), Positives = 17/33 (51%) Frame = +2 Query: 95 ASGELRPPFGGLELVGLLLASGEGDXXRGGRLA 193 A GE PP G E VGLL EG RGG A Sbjct: 694 AKGEPPPPVGPGEGVGLLGTGREGTAGRGGNRA 726
>GLNE_IDILO (Q5QY18) Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42)| ([Glutamate--ammonia-ligase] adenylyltransferase) (Glutamine-synthetase adenylyltransferase) (ATase) Length = 948 Score = 29.3 bits (64), Expect = 2.8 Identities = 13/43 (30%), Positives = 20/43 (46%) Frame = +3 Query: 111 DHPSAVWSLSASFLRPVRVXXXAVDGSPXLKEATPYMVRHTLR 239 D P A+W+L +F + R G L P M+RH ++ Sbjct: 479 DEPQALWTLIKNFRQESRRRSSGPRGRSALARLMPIMLRHAIQ 521
>M3K12_RAT (Q63796) Mitogen-activated protein kinase kinase kinase 12 (EC| 2.7.11.25) (Mixed lineage kinase) (Leucine-zipper protein kinase) (ZPK) (Dual leucine zipper bearing kinase) (DLK) (MAPK-upstream kinase) (MUK) Length = 888 Score = 28.9 bits (63), Expect = 3.6 Identities = 17/33 (51%), Positives = 17/33 (51%) Frame = +2 Query: 95 ASGELRPPFGGLELVGLLLASGEGDXXRGGRLA 193 A GE PP G E VGLL EG RGG A Sbjct: 694 AKGEPPPPVGPGEGVGLLGTGREGTTGRGGSRA 726
>M3K12_HUMAN (Q12852) Mitogen-activated protein kinase kinase kinase 12 (EC| 2.7.11.25) (Mixed lineage kinase) (Leucine-zipper protein kinase) (ZPK) (Dual leucine zipper bearing kinase) (DLK) (MAPK-upstream kinase) (MUK) Length = 859 Score = 28.9 bits (63), Expect = 3.6 Identities = 17/33 (51%), Positives = 17/33 (51%) Frame = +2 Query: 95 ASGELRPPFGGLELVGLLLASGEGDXXRGGRLA 193 A GE PP G E VGLL EG RGG A Sbjct: 661 AKGEPPPPVGPGEGVGLLGTGREGTSGRGGSRA 693
>NIA3_MAIZE (P49102) Nitrate reductase [NADH] 3 (EC 1.7.1.1) (NR)| Length = 889 Score = 28.5 bits (62), Expect = 4.7 Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 5/77 (6%) Frame = +2 Query: 2 HLLIYLKKYGRSST*EEEVCPDGAGYTAEEE-----ASGELRPPFGGLELVGLLLASGEG 166 H + +K Y R+ E PDG T + A +++ P G +E VG +G Sbjct: 695 HFDLLVKVYFRN---ENTKFPDGGRMTQYLDSLPVGAHVDVKGPLGHVEYVGRGGFVIDG 751 Query: 167 DXXRGGRLALVEGGDAV 217 + GRLA+V GG + Sbjct: 752 KPRKAGRLAMVAGGSGI 768
>SYY_PROAC (Q6A7W0) Tyrosyl-tRNA synthetase (EC 6.1.1.1) (Tyrosine--tRNA| ligase) (TyrRS) Length = 418 Score = 27.7 bits (60), Expect = 8.1 Identities = 12/25 (48%), Positives = 17/25 (68%) Frame = +2 Query: 134 LVGLLLASGEGDXXRGGRLALVEGG 208 +VG ++A+G D GGR A+ EGG Sbjct: 354 VVGAMVAAGVVDTKSGGRRAVAEGG 378
>DDL_BUCAP (O51927) D-alanine--D-alanine ligase (EC 6.3.2.4) (D-alanylalanine| synthetase) (D-Ala-D-Ala ligase) Length = 306 Score = 27.7 bits (60), Expect = 8.1 Identities = 14/27 (51%), Positives = 15/27 (55%) Frame = +2 Query: 14 YLKKYGRSST*EEEVCPDGAGYTAEEE 94 Y KY SST E +CP G Y EEE Sbjct: 212 YSSKYIESST--EYICPSGLNYQKEEE 236 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 23,715,018 Number of Sequences: 219361 Number of extensions: 334614 Number of successful extensions: 941 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 910 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 936 length of database: 80,573,946 effective HSP length: 62 effective length of database: 66,973,564 effective search space used: 1607365536 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
