ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd25l16
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|M61146.1|BLYPSAL Hordeum vulgare photosystem I protein (PSI-L... 436 e-119
2dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 232 4e-58
3dbj|AK119162.1| Oryza sativa (japonica cultivar-group) cDNA clon... 232 4e-58
4dbj|AK099109.1| Oryza sativa (japonica cultivar-group) cDNA clon... 232 4e-58
5dbj|AK059750.1| Oryza sativa (japonica cultivar-group) cDNA clon... 232 4e-58
6dbj|AK058207.1| Oryza sativa (japonica cultivar-group) cDNA clon... 232 4e-58
7gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 232 4e-58
8emb|AL732381.3|CNS08C94 Oryza sativa chromosome 12, . BAC OJ1112... 232 4e-58
9emb|AL731785.2|CNS08C89 Oryza sativa chromosome 12, . BAC OSJNBa... 232 4e-58
10dbj|AK105154.1| Oryza sativa (japonica cultivar-group) cDNA clon... 224 1e-55
11gb|AY103985.1| Zea mays PCO103239 mRNA sequence 198 6e-48
12emb|X57903.1|OS08RG10F O.sativa random single-copy DNA fragment ... 64 2e-07
13dbj|AB219568.1| Fragaria x ananassa FrPSI mRNA for photosystem I... 52 9e-04
14emb|X64445.1|SOPSAL S.oleracea psaL mRNA for subunit XI of photo... 50 0.004
15ref|NM_117349.2| Arabidopsis thaliana unknown protein AT4G12800 ... 44 0.22
16emb|AL161535.2|ATCHRIV35 Arabidopsis thaliana DNA chromosome 4, ... 44 0.22
17emb|AL161534.2|ATCHRIV34 Arabidopsis thaliana DNA chromosome 4, ... 44 0.22
18emb|AL049640.1|ATT20K18 Arabidopsis thaliana DNA chromosome 4, B... 44 0.22
19emb|AJ245867.1|ATH245867 Arabidopsis thaliana mRNA for photosyst... 44 0.22
20gb|AY097427.1| Arabidopsis thaliana AT4g12800/T20K18_150 mRNA, c... 44 0.22
21gb|AF446350.1|AF446350 Arabidopsis thaliana AT4g12800/T20K18_150... 44 0.22
22gb|AY059949.1| Arabidopsis thaliana probable photosystem I chain... 44 0.22
23gb|AF428447.1|AF428447 Arabidopsis thaliana AT4g12800/T20K18_150... 44 0.22
24emb|BX826774.1|CNS0A4GC Arabidopsis thaliana Full-length cDNA Co... 44 0.22
25emb|BX826431.1|CNS0A4G8 Arabidopsis thaliana Full-length cDNA Co... 44 0.22
26emb|BX826834.1|CNS0A38Y Arabidopsis thaliana Full-length cDNA Co... 44 0.22
27emb|BX826723.1|CNS0A3CA Arabidopsis thaliana Full-length cDNA Co... 44 0.22
28emb|BX826537.1|CNS0A35T Arabidopsis thaliana Full-length cDNA Co... 44 0.22
29gb|AY087339.1| Arabidopsis thaliana clone 34400 mRNA, complete s... 44 0.22
30dbj|AB015861.1| Arabidopsis thaliana psaL mRNA for photosystem I... 44 0.22
31dbj|D50456.1|CUSPSAL Cucumis sativus mRNA for PsaL, complete cds 42 0.86
32dbj|D83007.1|CUSPSALG Cucumis sativus seedling cotyledon psaL mR... 42 0.86
33gb|AC164096.3| Mus musculus BAC clone RP23-356H17 from chromosom... 40 3.4
34gb|AC125122.4| Mus musculus BAC clone RP24-269O4 from chromosome... 40 3.4
35gb|AC117192.3| Mus musculus BAC clone RP23-77A18 from 2, complet... 40 3.4
36gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete ... 40 3.4
37gb|AC155261.3| Mus musculus BAC clone RP24-66D10 from chromosome... 40 3.4
38gb|CP000123.1| Mycoplasma capricolum subsp. capricolum ATCC 2734... 40 3.4
39dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.4
40dbj|AP005449.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.4
41dbj|AP003952.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.4
42dbj|AK100837.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.4
43gb|AC132132.4| Mus musculus BAC clone RP23-235K2 from 8, complet... 40 3.4
44emb|AL928659.16| Mouse DNA sequence from clone RP23-271B13 on ch... 40 3.4 
>gb|M61146.1|BLYPSAL Hordeum vulgare photosystem I protein (PSI-L) mRNA, complete cds
          Length = 777

 Score =  436 bits (220), Expect = e-119
 Identities = 250/261 (95%), Gaps = 1/261 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccacctattaatctacttgaagaagtatgggaggtcgagcacgtaggaggaggaagtatg 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 675 ccacctattaatctacttgaagaagtatgggaggtcgagcacgtag-aggaggaagtatg 617

                                                                       
Query: 61  cccagacggcgccggatacaccgccgaagaagaagcctccggtgaactgcgaccaccctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 cccagacggcgccggatacaccgccgaagaagaagcctccggtgaactgcgaccaccctt 557

                                                                       
Query: 121 cggcggtctggagcttgtcggcctccttcttgcgtccggtgagggtgatnannnncgcgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||  |    |||||
Sbjct: 556 cggcggtctggagcttgtcggcctccttcttgcgtccggtgagggtgagcaccggcgcgg 497

                                                                       
Query: 181 tggacggctcgccctngttgaaggaggcgacgccgtacatggtgaggcacacgctgagga 240
           ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 496 tggacggctcgccctcgttgaaggaggcgacgccgtacatggtgaggcagacgctgagga 437

                                
Query: 241 tggagacgattncgatggcgc 261
           ||||||||| | |||||||||
Sbjct: 436 tggagacgagtccgatggcgc 416
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score =  232 bits (117), Expect = 4e-58
 Identities = 208/239 (87%), Gaps = 1/239 (0%)
 Strand = Plus / Minus

                                                                            
Query: 11       atctacttgaagaagtatgggaggtcgagcacgtaggaggaggaagtatgcccagacggc 70
                ||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||| | |
Sbjct: 13161383 atctacttgaagaagtacgggaggtcgagcacgtag-aggaggaagtaggcccagaggac 13161325

                                                                            
Query: 71       gccggatacaccgccgaagaagaagcctccggtgaactgcgaccacccttcggcggtctg 130
                |||||| |  ||||||||||||||||| ||||||||||  | ||| || |||||||||||
Sbjct: 13161324 gccggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctg 13161265

                                                                            
Query: 131      gagcttgtcggcctccttcttgcgtccggtgagggtgatnannnncgcggtggacggctc 190
                 ||||||||||||||||||||||| |||||||| || |       ||| |||||||||||
Sbjct: 13161264 cagcttgtcggcctccttcttgcggccggtgagcgtcagcgtcggcgccgtggacggctc 13161205

                                                                           
Query: 191      gccctngttgaaggaggcgacgccgtacatggtgaggcacacgctgaggatggagacga 249
                ||||| |  |||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 13161204 gccctcgccgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggcgacga 13161146
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>dbj|AK119162.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-D08, full
           insert sequence
          Length = 923

 Score =  232 bits (117), Expect = 4e-58
 Identities = 208/239 (87%), Gaps = 1/239 (0%)
 Strand = Plus / Minus

                                                                       
Query: 11  atctacttgaagaagtatgggaggtcgagcacgtaggaggaggaagtatgcccagacggc 70
           ||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||| | |
Sbjct: 749 atctacttgaagaagtacgggaggtcgagcacgtag-aggaggaagtaggcccagaggac 691

                                                                       
Query: 71  gccggatacaccgccgaagaagaagcctccggtgaactgcgaccacccttcggcggtctg 130
           |||||| |  ||||||||||||||||| ||||||||||  | ||| || |||||||||||
Sbjct: 690 gccggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctg 631

                                                                       
Query: 131 gagcttgtcggcctccttcttgcgtccggtgagggtgatnannnncgcggtggacggctc 190
            ||||||||||||||||||||||| |||||||| || |       ||| |||||||||||
Sbjct: 630 cagcttgtcggcctccttcttgcggccggtgagcgtcagcgtcggcgccgtggacggctc 571

                                                                      
Query: 191 gccctngttgaaggaggcgacgccgtacatggtgaggcacacgctgaggatggagacga 249
           ||||| |  |||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 570 gccctcgccgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggcgacga 512
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>dbj|AK099109.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023030F01, full
           insert sequence
          Length = 932

 Score =  232 bits (117), Expect = 4e-58
 Identities = 208/239 (87%), Gaps = 1/239 (0%)
 Strand = Plus / Minus

                                                                       
Query: 11  atctacttgaagaagtatgggaggtcgagcacgtaggaggaggaagtatgcccagacggc 70
           ||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||| | |
Sbjct: 699 atctacttgaagaagtacgggaggtcgagcacgtag-aggaggaagtaggcccagaggac 641

                                                                       
Query: 71  gccggatacaccgccgaagaagaagcctccggtgaactgcgaccacccttcggcggtctg 130
           |||||| |  ||||||||||||||||| ||||||||||  | ||| || |||||||||||
Sbjct: 640 gccggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctg 581

                                                                       
Query: 131 gagcttgtcggcctccttcttgcgtccggtgagggtgatnannnncgcggtggacggctc 190
            ||||||||||||||||||||||| |||||||| || |       ||| |||||||||||
Sbjct: 580 cagcttgtcggcctccttcttgcggccggtgagcgtcagcgtcggcgccgtggacggctc 521

                                                                      
Query: 191 gccctngttgaaggaggcgacgccgtacatggtgaggcacacgctgaggatggagacga 249
           ||||| |  |||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 520 gccctcgccgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggcgacga 462
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>dbj|AK059750.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-B01, full
           insert sequence
          Length = 985

 Score =  232 bits (117), Expect = 4e-58
 Identities = 208/239 (87%), Gaps = 1/239 (0%)
 Strand = Plus / Minus

                                                                       
Query: 11  atctacttgaagaagtatgggaggtcgagcacgtaggaggaggaagtatgcccagacggc 70
           ||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||| | |
Sbjct: 721 atctacttgaagaagtacgggaggtcgagcacgtag-aggaggaagtaggcccagaggac 663

                                                                       
Query: 71  gccggatacaccgccgaagaagaagcctccggtgaactgcgaccacccttcggcggtctg 130
           |||||| |  ||||||||||||||||| ||||||||||  | ||| || |||||||||||
Sbjct: 662 gccggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctg 603

                                                                       
Query: 131 gagcttgtcggcctccttcttgcgtccggtgagggtgatnannnncgcggtggacggctc 190
            ||||||||||||||||||||||| |||||||| || |       ||| |||||||||||
Sbjct: 602 cagcttgtcggcctccttcttgcggccggtgagcgtcagcgtcggcgccgtggacggctc 543

                                                                      
Query: 191 gccctngttgaaggaggcgacgccgtacatggtgaggcacacgctgaggatggagacga 249
           ||||| |  |||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 542 gccctcgccgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggcgacga 484
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>dbj|AK058207.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-010-A09, full
           insert sequence
          Length = 923

 Score =  232 bits (117), Expect = 4e-58
 Identities = 208/239 (87%), Gaps = 1/239 (0%)
 Strand = Plus / Minus

                                                                       
Query: 11  atctacttgaagaagtatgggaggtcgagcacgtaggaggaggaagtatgcccagacggc 70
           ||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||| | |
Sbjct: 749 atctacttgaagaagtacgggaggtcgagcacgtag-aggaggaagtaggcccagaggac 691

                                                                       
Query: 71  gccggatacaccgccgaagaagaagcctccggtgaactgcgaccacccttcggcggtctg 130
           |||||| |  ||||||||||||||||| ||||||||||  | ||| || |||||||||||
Sbjct: 690 gccggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctg 631

                                                                       
Query: 131 gagcttgtcggcctccttcttgcgtccggtgagggtgatnannnncgcggtggacggctc 190
            ||||||||||||||||||||||| |||||||| || |       ||| |||||||||||
Sbjct: 630 cagcttgtcggcctccttcttgcggccggtgagcgtcagcgtcggcgccgtggacggctc 571

                                                                      
Query: 191 gccctngttgaaggaggcgacgccgtacatggtgaggcacacgctgaggatggagacga 249
           ||||| |  |||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 570 gccctcgccgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggcgacga 512
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  232 bits (117), Expect = 4e-58
 Identities = 208/239 (87%), Gaps = 1/239 (0%)
 Strand = Plus / Minus

                                                                            
Query: 11       atctacttgaagaagtatgggaggtcgagcacgtaggaggaggaagtatgcccagacggc 70
                ||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||| | |
Sbjct: 13115658 atctacttgaagaagtacgggaggtcgagcacgtag-aggaggaagtaggcccagaggac 13115600

                                                                            
Query: 71       gccggatacaccgccgaagaagaagcctccggtgaactgcgaccacccttcggcggtctg 130
                |||||| |  ||||||||||||||||| ||||||||||  | ||| || |||||||||||
Sbjct: 13115599 gccggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctg 13115540

                                                                            
Query: 131      gagcttgtcggcctccttcttgcgtccggtgagggtgatnannnncgcggtggacggctc 190
                 ||||||||||||||||||||||| |||||||| || |       ||| |||||||||||
Sbjct: 13115539 cagcttgtcggcctccttcttgcggccggtgagcgtcagcgtcggcgccgtggacggctc 13115480

                                                                           
Query: 191      gccctngttgaaggaggcgacgccgtacatggtgaggcacacgctgaggatggagacga 249
                ||||| |  |||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 13115479 gccctcgccgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggcgacga 13115421
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>emb|AL732381.3|CNS08C94 Oryza sativa chromosome 12, . BAC OJ1112_F01 of library Monsanto from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 193499

 Score =  232 bits (117), Expect = 4e-58
 Identities = 208/239 (87%), Gaps = 1/239 (0%)
 Strand = Plus / Plus

                                                                          
Query: 11     atctacttgaagaagtatgggaggtcgagcacgtaggaggaggaagtatgcccagacggc 70
              ||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||| | |
Sbjct: 169359 atctacttgaagaagtacgggaggtcgagcacgtag-aggaggaagtaggcccagaggac 169417

                                                                          
Query: 71     gccggatacaccgccgaagaagaagcctccggtgaactgcgaccacccttcggcggtctg 130
              |||||| |  ||||||||||||||||| ||||||||||  | ||| || |||||||||||
Sbjct: 169418 gccggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctg 169477

                                                                          
Query: 131    gagcttgtcggcctccttcttgcgtccggtgagggtgatnannnncgcggtggacggctc 190
               ||||||||||||||||||||||| |||||||| || |       ||| |||||||||||
Sbjct: 169478 cagcttgtcggcctccttcttgcggccggtgagcgtcagcgtcggcgccgtggacggctc 169537

                                                                         
Query: 191    gccctngttgaaggaggcgacgccgtacatggtgaggcacacgctgaggatggagacga 249
              ||||| |  |||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 169538 gccctcgccgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggcgacga 169596
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>emb|AL731785.2|CNS08C89 Oryza sativa chromosome 12, . BAC OSJNBa0037L20 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 178827

 Score =  232 bits (117), Expect = 4e-58
 Identities = 208/239 (87%), Gaps = 1/239 (0%)
 Strand = Plus / Minus

                                                                          
Query: 11     atctacttgaagaagtatgggaggtcgagcacgtaggaggaggaagtatgcccagacggc 70
              ||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||| | |
Sbjct: 150586 atctacttgaagaagtacgggaggtcgagcacgtag-aggaggaagtaggcccagaggac 150528

                                                                          
Query: 71     gccggatacaccgccgaagaagaagcctccggtgaactgcgaccacccttcggcggtctg 130
              |||||| |  ||||||||||||||||| ||||||||||  | ||| || |||||||||||
Sbjct: 150527 gccggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctg 150468

                                                                          
Query: 131    gagcttgtcggcctccttcttgcgtccggtgagggtgatnannnncgcggtggacggctc 190
               ||||||||||||||||||||||| |||||||| || |       ||| |||||||||||
Sbjct: 150467 cagcttgtcggcctccttcttgcggccggtgagcgtcagcgtcggcgccgtggacggctc 150408

                                                                         
Query: 191    gccctngttgaaggaggcgacgccgtacatggtgaggcacacgctgaggatggagacga 249
              ||||| |  |||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 150407 gccctcgccgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggcgacga 150349
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>dbj|AK105154.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-103-F07, full
           insert sequence
          Length = 964

 Score =  224 bits (113), Expect = 1e-55
 Identities = 207/239 (86%), Gaps = 1/239 (0%)
 Strand = Plus / Minus

                                                                       
Query: 11  atctacttgaagaagtatgggaggtcgagcacgtaggaggaggaagtatgcccagacggc 70
           ||||||||||||||||| ||||| |||||||||||| ||||||||||| ||||||| | |
Sbjct: 704 atctacttgaagaagtacgggagatcgagcacgtag-aggaggaagtaggcccagaggac 646

                                                                       
Query: 71  gccggatacaccgccgaagaagaagcctccggtgaactgcgaccacccttcggcggtctg 130
           |||||| |  ||||||||||||||||| ||||||||||  | ||| || |||||||||||
Sbjct: 645 gccggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctg 586

                                                                       
Query: 131 gagcttgtcggcctccttcttgcgtccggtgagggtgatnannnncgcggtggacggctc 190
            ||||||||||||||||||||||| |||||||| || |       ||| |||||||||||
Sbjct: 585 cagcttgtcggcctccttcttgcggccggtgagcgtcagcgtcggcgccgtggacggctc 526

                                                                      
Query: 191 gccctngttgaaggaggcgacgccgtacatggtgaggcacacgctgaggatggagacga 249
           ||||| |  |||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 525 gccctcgccgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggcgacga 467
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>gb|AY103985.1| Zea mays PCO103239 mRNA sequence
          Length = 1657

 Score =  198 bits (100), Expect = 6e-48
 Identities = 203/238 (85%), Gaps = 1/238 (0%)
 Strand = Plus / Minus

                                                                        
Query: 12   tctacttgaagaagtatgggaggtcgagcacgtaggaggaggaagtatgcccagacggcg 71
            |||||||||||||||| |||||||||||||||||| ||||| ||||| |||||||   ||
Sbjct: 1499 tctacttgaagaagtaggggaggtcgagcacgtag-aggagaaagtaggcccagagcacg 1441

                                                                        
Query: 72   ccggatacaccgccgaagaagaagcctccggtgaactgcgaccacccttcggcggtctgg 131
            ||||| |  |||||||||||||| || ||||||||||  | ||| || ||||||||||| 
Sbjct: 1440 ccggagatgccgccgaagaagaaccccccggtgaacttggcccagccgtcggcggtctgc 1381

                                                                        
Query: 132  agcttgtcggcctccttcttgcgtccggtgagggtgatnannnncgcggtggacggctcg 191
            |||||||||||||||||||| |  |||||||| ||||       ||| |||||||| || 
Sbjct: 1380 agcttgtcggcctccttcttcctgccggtgagcgtgagcgtgggcgccgtggacgggtcc 1321

                                                                      
Query: 192  ccctngttgaaggaggcgacgccgtacatggtgaggcacacgctgaggatggagacga 249
            |||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 1320 ccctcgttgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggcgacga 1263
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>emb|X57903.1|OS08RG10F O.sativa random single-copy DNA fragment 08RG108F
          Length = 162

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 52/56 (92%), Gaps = 2/56 (3%)
 Strand = Plus / Minus

                                                                   
Query: 12  tctacttgaagaagtatgggaggtcgagc-acgtaggaggaggaagtatgcccaga 66
           |||||||||||||||| |||||||||||| ||||| |||||||||||| |||||||
Sbjct: 109 tctacttgaagaagtacgggaggtcgagctacgta-gaggaggaagtaggcccaga 55
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>dbj|AB219568.1| Fragaria x ananassa FrPSI mRNA for photosystem I protein, partial
           cds
          Length = 404

 Score = 52.0 bits (26), Expect = 9e-04
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                     
Query: 119 ttcggcggtctggagcttgtcggcctccttcttgcgtccggt 160
           ||||||||| ||||||| ||||| |||||||||||| |||||
Sbjct: 183 ttcggcggtttggagctggtcgggctccttcttgcggccggt 142
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>emb|X64445.1|SOPSAL S.oleracea psaL mRNA for subunit XI of photosystem I reaction
           center
          Length = 834

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                
Query: 72  ccggatacaccgccgaagaagaagcctccggtgaact 108
           ||||| ||||| ||||||||||| |||||||||||||
Sbjct: 676 ccggaaacaccaccgaagaagaaccctccggtgaact 640
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>ref|NM_117349.2| Arabidopsis thaliana unknown protein AT4G12800 mRNA, complete cds
          Length = 984

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 213 ccgtacatggtgaggcacacgctgaggatg 242
           ||||| ||||||||||||| ||||||||||
Sbjct: 608 ccgtagatggtgaggcacatgctgaggatg 579
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>emb|AL161535.2|ATCHRIV35 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 35
          Length = 199280

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 213  ccgtacatggtgaggcacacgctgaggatg 242
            ||||| ||||||||||||| ||||||||||
Sbjct: 3315 ccgtagatggtgaggcacatgctgaggatg 3286
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>emb|AL161534.2|ATCHRIV34 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 34
          Length = 196107

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                            
Query: 213    ccgtacatggtgaggcacacgctgaggatg 242
              ||||| ||||||||||||| ||||||||||
Sbjct: 194422 ccgtagatggtgaggcacatgctgaggatg 194393
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>emb|AL049640.1|ATT20K18 Arabidopsis thaliana DNA chromosome 4, BAC clone  T20K18 (ESSA project)
          Length = 79375

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                           
Query: 213   ccgtacatggtgaggcacacgctgaggatg 242
             ||||| ||||||||||||| ||||||||||
Sbjct: 52810 ccgtagatggtgaggcacatgctgaggatg 52781
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>emb|AJ245867.1|ATH245867 Arabidopsis thaliana mRNA for photosystem I subunit XI precursor
          Length = 928

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 213 ccgtacatggtgaggcacacgctgaggatg 242
           ||||| ||||||||||||| ||||||||||
Sbjct: 576 ccgtaaatggtgaggcacatgctgaggatg 547
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>gb|AY097427.1| Arabidopsis thaliana AT4g12800/T20K18_150 mRNA, complete cds
          Length = 660

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 213 ccgtacatggtgaggcacacgctgaggatg 242
           ||||| ||||||||||||| ||||||||||
Sbjct: 461 ccgtagatggtgaggcacatgctgaggatg 432
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>gb|AF446350.1|AF446350 Arabidopsis thaliana AT4g12800/T20K18_150 mRNA, complete cds
          Length = 821

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 213 ccgtacatggtgaggcacacgctgaggatg 242
           ||||| ||||||||||||| ||||||||||
Sbjct: 497 ccgtagatggtgaggcacatgctgaggatg 468
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>gb|AY059949.1| Arabidopsis thaliana probable photosystem I chain XI precursor
           (At4g12800; T20K18.150) mRNA, complete cds
          Length = 853

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 213 ccgtacatggtgaggcacacgctgaggatg 242
           ||||| ||||||||||||| ||||||||||
Sbjct: 503 ccgtagatggtgaggcacatgctgaggatg 474
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>gb|AF428447.1|AF428447 Arabidopsis thaliana AT4g12800/T20K18_150 mRNA, complete cds
          Length = 842

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 213 ccgtacatggtgaggcacacgctgaggatg 242
           ||||| ||||||||||||| ||||||||||
Sbjct: 497 ccgtagatggtgaggcacatgctgaggatg 468
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>emb|BX826774.1|CNS0A4GC Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB62ZC03 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 615

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 213 ccgtacatggtgaggcacacgctgaggatg 242
           ||||| ||||||||||||| ||||||||||
Sbjct: 267 ccgtagatggtgaggcacatgctgaggatg 238
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>emb|BX826431.1|CNS0A4G8 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB26ZA06 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 823

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 213 ccgtacatggtgaggcacacgctgaggatg 242
           ||||| ||||||||||||| ||||||||||
Sbjct: 483 ccgtagatggtgaggcacatgctgaggatg 454
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>emb|BX826834.1|CNS0A38Y Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB68ZB09 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 762

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 213 ccgtacatggtgaggcacacgctgaggatg 242
           ||||| ||||||||||||| ||||||||||
Sbjct: 484 ccgtagatggtgaggcacatgctgaggatg 455
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>emb|BX826723.1|CNS0A3CA Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB57ZH08 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 816

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 213 ccgtacatggtgaggcacacgctgaggatg 242
           ||||| ||||||||||||| ||||||||||
Sbjct: 478 ccgtagatggtgaggcacatgctgaggatg 449
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>emb|BX826537.1|CNS0A35T Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB36ZF12 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 797

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 213 ccgtacatggtgaggcacacgctgaggatg 242
           ||||| ||||||||||||| ||||||||||
Sbjct: 459 ccgtagatggtgaggcacatgctgaggatg 430
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>gb|AY087339.1| Arabidopsis thaliana clone 34400 mRNA, complete sequence
          Length = 944

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 213 ccgtacatggtgaggcacacgctgaggatg 242
           ||||| ||||||||||||| ||||||||||
Sbjct: 609 ccgtaaatggtgaggcacatgctgaggatg 580
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>dbj|AB015861.1| Arabidopsis thaliana psaL mRNA for photosystem I subunit PSI-L,
           partial cds
          Length = 512

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 213 ccgtacatggtgaggcacacgctgaggatg 242
           ||||| ||||||||||||| ||||||||||
Sbjct: 177 ccgtagatggtgaggcacatgctgaggatg 148
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>dbj|D50456.1|CUSPSAL Cucumis sativus mRNA for PsaL, complete cds
          Length = 812

 Score = 42.1 bits (21), Expect = 0.86
 Identities = 49/57 (85%), Gaps = 1/57 (1%)
 Strand = Plus / Minus

                                                                    
Query: 10  aatctacttgaagaagtatgggaggtcgagcacgtaggaggaggaagtatgcccaga 66
           ||||||||||| | |||| |||||||| |  || ||| |||||||||||||||||||
Sbjct: 737 aatctacttgacgtagtaagggaggtccaagacatag-aggaggaagtatgcccaga 682
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>dbj|D83007.1|CUSPSALG Cucumis sativus seedling cotyledon psaL mRNA for subunit of
           photosystem I, complete cds
          Length = 811

 Score = 42.1 bits (21), Expect = 0.86
 Identities = 49/57 (85%), Gaps = 1/57 (1%)
 Strand = Plus / Minus

                                                                    
Query: 10  aatctacttgaagaagtatgggaggtcgagcacgtaggaggaggaagtatgcccaga 66
           ||||||||||| | |||| |||||||| |  || ||| |||||||||||||||||||
Sbjct: 674 aatctacttgacgtagtaagggaggtccaagacatag-aggaggaagtatgcccaga 619
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>gb|AC164096.3| Mus musculus BAC clone RP23-356H17 from chromosome 8, complete sequence
          Length = 229851

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 38    agcacgtaggaggaggaagt 57
             ||||||||||||||||||||
Sbjct: 27622 agcacgtaggaggaggaagt 27641
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>gb|AC125122.4| Mus musculus BAC clone RP24-269O4 from chromosome 18, complete sequence
          Length = 173614

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 43     gtaggaggaggaagtatgcccaga 66
              ||||||||| ||||||||||||||
Sbjct: 151207 gtaggaggaagaagtatgcccaga 151184
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>gb|AC117192.3| Mus musculus BAC clone RP23-77A18 from 2, complete sequence
          Length = 161199

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 10     aatctacttgaagaagtatg 29
              ||||||||||||||||||||
Sbjct: 143165 aatctacttgaagaagtatg 143184
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>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence
          Length = 2726152

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 119     ttcggcggtctggagcttgtcggc 142
               |||||||| |||||||||||||||
Sbjct: 1174925 ttcggcggactggagcttgtcggc 1174948
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>gb|AC155261.3| Mus musculus BAC clone RP24-66D10 from chromosome 18, complete sequence
          Length = 207400

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 43     gtaggaggaggaagtatgcccaga 66
              ||||||||| ||||||||||||||
Sbjct: 189003 gtaggaggaagaagtatgcccaga 189026
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>gb|CP000123.1| Mycoplasma capricolum subsp. capricolum ATCC 27343, complete genome
          Length = 1010023

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 7      attaatctacttgaagaagt 26
              ||||||||||||||||||||
Sbjct: 781146 attaatctacttgaagaagt 781165
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 30       ggaggtcgagcacgtaggag 49
                ||||||||||||||||||||
Sbjct: 13364235 ggaggtcgagcacgtaggag 13364254
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>dbj|AP005449.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0427E01
          Length = 146395

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 30     ggaggtcgagcacgtaggag 49
              ||||||||||||||||||||
Sbjct: 126045 ggaggtcgagcacgtaggag 126064
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>dbj|AP003952.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OJ1294_G12
          Length = 121979

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 30    ggaggtcgagcacgtaggag 49
             ||||||||||||||||||||
Sbjct: 25667 ggaggtcgagcacgtaggag 25686
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>dbj|AK100837.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023123E15, full
           insert sequence
          Length = 1812

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 30  ggaggtcgagcacgtaggag 49
           ||||||||||||||||||||
Sbjct: 211 ggaggtcgagcacgtaggag 192
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>gb|AC132132.4| Mus musculus BAC clone RP23-235K2 from 8, complete sequence
          Length = 198321

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 38    agcacgtaggaggaggaagt 57
             ||||||||||||||||||||
Sbjct: 58602 agcacgtaggaggaggaagt 58583
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>emb|AL928659.16| Mouse DNA sequence from clone RP23-271B13 on chromosome 2, complete
              sequence
          Length = 209560

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 10     aatctacttgaagaagtatg 29
              ||||||||||||||||||||
Sbjct: 121761 aatctacttgaagaagtatg 121780


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,490,779
Number of Sequences: 3902068
Number of extensions: 1490779
Number of successful extensions: 22565
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 22437
Number of HSP's gapped (non-prelim): 113
length of query: 261
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 239
effective length of database: 17,147,199,772
effective search space: 4098180745508
effective search space used: 4098180745508
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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