ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd26a15
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MYSC_ACACA (P10569) Myosin IC heavy chain 31 2.6
2Y604_ENCCU (Q8SVF8) Hypothetical protein ECU06_0040 30 5.8
3Y7I9_ENCCU (Q8ST30) Hypothetical protein ECU07_1890/ECU10_0010 30 5.8
4YB03_ENCCU (Q8SU90) Hypothetical protein ECU11_0030 30 5.8
5PLCB2_HUMAN (Q00722) 1-phosphatidylinositol-4,5-bisphosphate pho... 30 5.8
6Y6G8_ENCCU (Q8SV57) Hypothetical protein ECU06_1680 30 5.8

>MYSC_ACACA (P10569) Myosin IC heavy chain|
          Length = 1168

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 17/41 (41%), Positives = 19/41 (46%)
 Frame = -1

Query: 557  SPGYPSTAGWPPPSVQA*LSLVSSRGYPRR*GSAPRSSGAP 435
            +PG P   G PPP           RG P   G+APR  GAP
Sbjct: 1075 APGGPGRGGAPPPGAGR-AGPPGGRGMPAPGGAAPRGRGAP 1114



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>Y604_ENCCU (Q8SVF8) Hypothetical protein ECU06_0040|
          Length = 477

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
 Frame = -3

Query: 591 GIYQNKERTDRIARIS-LYCWMASSVCASLVELGELKRLSKA-MRKRAKELRGADKYEDE 418
           G   + ER +RIA +  + C     +C  L E   L  L++  M+K  KE    DK +D 
Sbjct: 72  GFLYSIERWERIAEVEKIVCNACKEICLGLREEELLGLLAEGGMKKTLKEEFSEDKAKDA 131

Query: 417 QYLGKMKQSDDRLL 376
           +YL  +   D  LL
Sbjct: 132 RYLEYIVVDDVLLL 145



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>Y7I9_ENCCU (Q8ST30) Hypothetical protein ECU07_1890/ECU10_0010|
          Length = 433

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
 Frame = -3

Query: 591 GIYQNKERTDRIARIS-LYCWMASSVCASLVELGELKRLSKA-MRKRAKELRGADKYEDE 418
           G   + ER +RIA +  + C     +C  L E   L  L++  M+K  KE    DK +D 
Sbjct: 35  GFLYSIERWERIAEVEKIVCNACKEICLGLREEELLGLLAEGGMKKTLKEEFSEDKAKDA 94

Query: 417 QYLGKMKQSDDRLL 376
           +YL  +   D  LL
Sbjct: 95  RYLEYIVVDDVLLL 108



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>YB03_ENCCU (Q8SU90) Hypothetical protein ECU11_0030|
          Length = 641

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
 Frame = -3

Query: 591 GIYQNKERTDRIARIS-LYCWMASSVCASLVELGELKRLSKA-MRKRAKELRGADKYEDE 418
           G   + ER +RIA +  + C     +C  L E   L  L++  M+K  KE    DK +D 
Sbjct: 243 GFLYSIERWERIAEVEKIVCNACKEICLGLREEELLGLLAEGGMKKTLKEEFSEDKAKDA 302

Query: 417 QYLGKMKQSDDRLL 376
           +YL  +   D  LL
Sbjct: 303 RYLEYIVVDDVLLL 316



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>PLCB2_HUMAN (Q00722) 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase|
            beta 2 (EC 3.1.4.11) (Phosphoinositide phospholipase C)
            (Phospholipase C-beta-2) (PLC-beta-2)
          Length = 1181

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 26/73 (35%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
 Frame = -3

Query: 513  ASLVELGELKRLSKAMRKRAKEL-----RGADKYEDEQYLGKMKQSDDRLLALVKAGMDV 349
            ASL EL ELK + K  R+  KEL     RGA ++E+    G  +        L + G   
Sbjct: 883  ASLEELRELKGVVKLQRRHEKELRELERRGARRWEELLQRGAAQ--------LAELGPPG 934

Query: 348  VVAVGLLQLAPKK 310
            V  VG  +L P K
Sbjct: 935  VGGVGACKLGPGK 947



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>Y6G8_ENCCU (Q8SV57) Hypothetical protein ECU06_1680|
          Length = 458

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
 Frame = -3

Query: 591 GIYQNKERTDRIARIS-LYCWMASSVCASLVELGELKRLSKA-MRKRAKELRGADKYEDE 418
           G   + ER +RIA +  + C     +C  L E   L  L++  M+K  KE    DK +D 
Sbjct: 53  GFLYSIERWERIAEVEKIVCNACKEICLGLREEELLGLLAEGGMKKTLKEEFSEDKAKDA 112

Query: 417 QYLGKMKQSDDRLL 376
           +YL  +   D  LL
Sbjct: 113 RYLEYIVVDDVLLL 126


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,319,581
Number of Sequences: 219361
Number of extensions: 1468116
Number of successful extensions: 4983
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4869
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5710231900
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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