ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd26a14
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SCNAA_XENLA (P51167) Amiloride-sensitive sodium channel alpha-su... 30 6.6
2DHH1_CANGA (Q6FQU5) ATP-dependent RNA helicase DHH1 (EC 3.6.1.-) 29 8.6

>SCNAA_XENLA (P51167) Amiloride-sensitive sodium channel alpha-subunit|
           (Epithelial Na+ channel alpha subunit) (Alpha ENaC)
           (Nonvoltage-gated sodium channel 1 alpha subunit)
           (SCNEA) (Alpha NaCH)
          Length = 632

 Score = 29.6 bits (65), Expect = 6.6
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +2

Query: 242 MMIVRRQQEKKEELGEPNYLTRFPAPAFGDRSFMNPHV 355
           M+++ R   KK   GE   +   PAPAF D     PH+
Sbjct: 540 MILLHRYYYKKANEGEETTVVPTPAPAFADLEQQVPHI 577



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>DHH1_CANGA (Q6FQU5) ATP-dependent RNA helicase DHH1 (EC 3.6.1.-)|
          Length = 507

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +2

Query: 71  RKQTHNATQTQPQPGHRVRXPGDTTFVLPQVSFSLFLPIP 190
           ++Q     Q Q Q G +   PG   F+ PQ     F+P+P
Sbjct: 429 QEQQQQQQQQQGQQGQQQGYPGQQAFIPPQQGQPQFMPVP 468


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,291,976
Number of Sequences: 219361
Number of extensions: 1049937
Number of successful extensions: 2344
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2344
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4986986160
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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