ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd26a11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PA2GX_HUMAN (O15496) Group 10 secretory phospholipase A2 precurs... 30 4.5
2MSH3_ARATH (O65607) DNA mismatch repair protein MSH3 (AtMsh3) 29 10.0

>PA2GX_HUMAN (O15496) Group 10 secretory phospholipase A2 precursor (EC 3.1.1.4)|
           (Group X secretory phospholipase A2)
           (Phosphatidylcholine 2-acylhydrolase GX) (GX sPLA2)
           (sPLA2-X)
          Length = 155

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +2

Query: 347 KEIVKYCTKG*CNTYHVC-KQVHSSRCSSPTHEITWQRINANIHCGP*E 490
           ++ + +C    C+ +  C  +   + CS  T   +WQ +N ++ CGP E
Sbjct: 68  RDAIDWC----CHGHDCCYTRAEEAGCSPKTERYSWQCVNQSVLCGPAE 112



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>MSH3_ARATH (O65607) DNA mismatch repair protein MSH3 (AtMsh3)|
          Length = 1081

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -1

Query: 128 ESEENGSSCCTTHQIKKMVHLAAQPI 51
           E+ E G SC T H I  M HL  Q +
Sbjct: 364 EAAEKGMSCLTVHTIMNMPHLTVQAL 389


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,858,080
Number of Sequences: 219361
Number of extensions: 1573293
Number of successful extensions: 2936
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2936
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4430660157
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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