ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd26a07 |
|---|---|
| Clone Library Name | barley_pub |
>ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor| Length = 324 Score = 91.7 bits (226), Expect = 1e-18 Identities = 41/93 (44%), Positives = 60/93 (64%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 284 K+Y N W + + L+ AF QPG + A+VI++R +GRSRGFGF++F + + +AL Sbjct: 218 KLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDT 277 Query: 283 MDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQ 185 M+ VEL+GRPLRL++A Q P S P S + Sbjct: 278 MNEVELEGRPLRLNVAGQKAPVSSPPVVETSPE 310 Score = 51.6 bits (122), Expect = 1e-06 Identities = 21/74 (28%), Positives = 44/74 (59%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 284 ++Y GN + + + L F + ++++R T RSRGF FV+ ++++AK A++ Sbjct: 115 RLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRL 174 Query: 283 MDGVELDGRPLRLS 242 DG ++ GR ++++ Sbjct: 175 FDGSQVGGRTVKVN 188
>ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A)| Length = 273 Score = 88.2 bits (217), Expect = 1e-17 Identities = 38/81 (46%), Positives = 59/81 (72%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 284 +VY GN WGV DAL+ F Q +V A+V+++RD+GRSRGFGFV++ + ++ A+++ Sbjct: 189 RVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIES 248 Query: 283 MDGVELDGRPLRLSLAAQNPP 221 +DGV+L+GR +R+S A PP Sbjct: 249 LDGVDLNGRAIRVSPAEARPP 269 Score = 60.5 bits (145), Expect = 3e-09 Identities = 30/74 (40%), Positives = 46/74 (62%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 284 K++ GN + + AL FE + VI+++ TGRSRGFGFV+ + ++ +AA Q Sbjct: 88 KIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQ 147 Query: 283 MDGVELDGRPLRLS 242 +G ELDGR LR++ Sbjct: 148 FNGYELDGRALRVN 161
>ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precursor (CP-RBP30)| Length = 279 Score = 88.2 bits (217), Expect = 1e-17 Identities = 38/81 (46%), Positives = 59/81 (72%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 284 +VY GN WGV DAL+ F Q +V A+V+++RD+GRSRGFGFV++ + ++ A+++ Sbjct: 195 RVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIES 254 Query: 283 MDGVELDGRPLRLSLAAQNPP 221 +DGV+L+GR +R+S A PP Sbjct: 255 LDGVDLNGRAIRVSPAEARPP 275 Score = 59.7 bits (143), Expect = 4e-09 Identities = 30/74 (40%), Positives = 46/74 (62%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 284 K++ GN + + AL FE + VI+++ TGRSRGFGFV+ + ++ +AA Q Sbjct: 88 KIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQ 147 Query: 283 MDGVELDGRPLRLS 242 +G ELDGR LR++ Sbjct: 148 FNGYELDGRALRVN 161
>ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloroplast| precursor Length = 289 Score = 85.5 bits (210), Expect = 7e-17 Identities = 39/81 (48%), Positives = 58/81 (71%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 284 +VY GN WGV AL+ F Q +V ARVI++RD+GRS+GFGFV++ + Q+ + A+++ Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKS 264 Query: 283 MDGVELDGRPLRLSLAAQNPP 221 +DG +LDGR +R+S A PP Sbjct: 265 LDGADLDGRQIRVSEAEARPP 285 Score = 66.2 bits (160), Expect = 5e-11 Identities = 34/81 (41%), Positives = 50/81 (61%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 284 K++ GN + V + L FE + VI+++ TGRSRGFGFV+ ++ + +AA Q Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQ 151 Query: 283 MDGVELDGRPLRLSLAAQNPP 221 +G ELDGRPLR++ A PP Sbjct: 152 FNGYELDGRPLRVN-AGPPPP 171
>ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast precursor (CP29B)| Length = 291 Score = 83.6 bits (205), Expect = 3e-16 Identities = 37/80 (46%), Positives = 57/80 (71%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 284 +VY GN WGV ALK F Q +V A+V+++RD+GRSRGFGFV++ + ++ A+ + Sbjct: 208 RVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDS 267 Query: 283 MDGVELDGRPLRLSLAAQNP 224 ++GV+LDGR +R+S A + P Sbjct: 268 LNGVDLDGRSIRVSAAEERP 287 Score = 60.5 bits (145), Expect = 3e-09 Identities = 30/74 (40%), Positives = 47/74 (63%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 284 K++ GN + V + AL FE + VI+++ TGRSRGFGFV+ T ++ +AA Q Sbjct: 88 KLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQ 147 Query: 283 MDGVELDGRPLRLS 242 +G E+DGR +R++ Sbjct: 148 FNGYEIDGRAIRVN 161
>ROC2_NICPL (P49314) 31 kDa ribonucleoprotein, chloroplast precursor (CP-RBP31)| Length = 292 Score = 83.6 bits (205), Expect = 3e-16 Identities = 36/80 (45%), Positives = 57/80 (71%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 284 +VY GN WGV ALK F Q +V A+V+++RD+GRSRGFGFV++ + ++ A+ + Sbjct: 209 RVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDS 268 Query: 283 MDGVELDGRPLRLSLAAQNP 224 ++G++LDGR +R+S A + P Sbjct: 269 LNGIDLDGRSIRVSAAEERP 288 Score = 58.5 bits (140), Expect = 1e-08 Identities = 29/74 (39%), Positives = 47/74 (63%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 284 K++ GN + V + AL FE + VI+++ +GRSRGFGFV+ T ++ +AA Q Sbjct: 89 KLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQ 148 Query: 283 MDGVELDGRPLRLS 242 +G E+DGR +R++ Sbjct: 149 FNGYEIDGRAIRVN 162
>ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein cp29) Length = 342 Score = 82.8 bits (203), Expect = 5e-16 Identities = 38/83 (45%), Positives = 57/83 (68%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 284 ++Y GN WGV AL+ F Q +V ARVI++RD+GRS+GFGFV+ + Q+ + A+ + Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317 Query: 283 MDGVELDGRPLRLSLAAQNPPAG 215 ++G +LDGR +R+S A PP G Sbjct: 318 LNGADLDGRQIRVSEAEARPPRG 340 Score = 63.5 bits (153), Expect = 3e-10 Identities = 33/81 (40%), Positives = 48/81 (59%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 284 K++ GN + V + L FE + VI+++ TGRSRGFGFV+ T + +AA Q Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159 Query: 283 MDGVELDGRPLRLSLAAQNPP 221 +G E +GRPLR++ A PP Sbjct: 160 FNGYEFEGRPLRVN-AGPPPP 179
>ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33) (RNA-binding protein cp31) Length = 329 Score = 76.3 bits (186), Expect = 4e-14 Identities = 34/81 (41%), Positives = 52/81 (64%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 284 +VY GN W V L+ F +V ARV+++R+TGRSRGFGFV+ + + A+ A Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISA 304 Query: 283 MDGVELDGRPLRLSLAAQNPP 221 +DG L+GR +R+++A + PP Sbjct: 305 LDGQNLEGRAIRVNVAEERPP 325 Score = 60.8 bits (146), Expect = 2e-09 Identities = 33/89 (37%), Positives = 53/89 (59%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 284 K++ GN + V + AL FE + A VI+ R+T +SRGFGFV+ ++ +A+ A++ Sbjct: 151 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEK 210 Query: 283 MDGVELDGRPLRLSLAAQNPPAGSTPSTA 197 + +L+GR L ++ AA P GS P A Sbjct: 211 FNRYDLNGRLLTVNKAA---PRGSRPERA 236
>NSR1_YEAST (P27476) Nuclear localization sequence-binding protein (P67)| Length = 414 Score = 75.1 bits (183), Expect = 1e-13 Identities = 37/94 (39%), Positives = 52/94 (55%), Gaps = 8/94 (8%) Frame = -3 Query: 460 VYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 281 ++ G W + + LK FE G++GARVI+ER T RSRG+G+V F A+ A+Q M Sbjct: 170 IFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEM 229 Query: 280 DGVELDGRPLRLSLAAQNPPA--------GSTPS 203 G E+DGRP+ ++ P G TPS Sbjct: 230 QGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPS 263 Score = 55.5 bits (132), Expect = 8e-08 Identities = 26/79 (32%), Positives = 43/79 (54%) Frame = -3 Query: 460 VYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 281 ++ GN + DA+ F +V R+ +T + +GFG+V F ++DAK AL A+ Sbjct: 269 LFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDAL 328 Query: 280 DGVELDGRPLRLSLAAQNP 224 G +D RP+RL ++ P Sbjct: 329 QGEYIDNRPVRLDFSSPRP 347
>ROC1_SPIOL (P28644) 28 kDa ribonucleoprotein, chloroplast (28RNP)| Length = 233 Score = 72.4 bits (176), Expect = 6e-13 Identities = 34/80 (42%), Positives = 50/80 (62%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 284 +VY GN W V L+ F +V ARV+ +R+TGRSRGFGFV+ + + A+ A Sbjct: 150 RVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAA 209 Query: 283 MDGVELDGRPLRLSLAAQNP 224 +DG LDGR +R+++A + P Sbjct: 210 LDGQTLDGRAVRVNVAEERP 229 Score = 63.5 bits (153), Expect = 3e-10 Identities = 33/101 (32%), Positives = 59/101 (58%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 284 K++ GN + V ++ L F+ + A VI+ R+T RSRGFGFV+ T+++A+ A++ Sbjct: 56 KLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEL 115 Query: 283 MDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKNSLTWI 161 ++G ++DGR L ++ AA P GS + E + ++ Sbjct: 116 LNGYDMDGRQLTVNKAA---PRGSPERAPRGDFEPSCRVYV 153
>GRP2_ARATH (Q9SVM8) Glycine-rich RNA-binding protein 2, mitochondrial| precursor (AtGRP2) Length = 158 Score = 72.0 bits (175), Expect = 8e-13 Identities = 37/84 (44%), Positives = 53/84 (63%) Frame = -3 Query: 469 TXKVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAAL 290 + K++ G WG +L+ AF +V A+VI +R+TGRSRGFGFV+F+ A AA+ Sbjct: 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93 Query: 289 QAMDGVELDGRPLRLSLAAQNPPA 218 MDG EL+GR +R++ A P A Sbjct: 94 SEMDGKELNGRHIRVNPANDRPSA 117
>ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precursor (28RNP)| Length = 276 Score = 70.5 bits (171), Expect = 2e-12 Identities = 32/82 (39%), Positives = 50/82 (60%) Frame = -3 Query: 469 TXKVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAAL 290 T ++Y GN W + L+ F +V ARV+F+R++GRSRGFGFV+ + + A+ Sbjct: 190 TYRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAI 249 Query: 289 QAMDGVELDGRPLRLSLAAQNP 224 +DG LDGR +R++ A + P Sbjct: 250 ANLDGQTLDGRTIRVNAAEERP 271 Score = 59.3 bits (142), Expect = 6e-09 Identities = 35/90 (38%), Positives = 55/90 (61%), Gaps = 1/90 (1%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVG-ARVIFERDTGRSRGFGFVSFHTIQDAKAALQ 287 K++ GN + + ++ L F+ Q G+V A VI+ R+T RSRGFGFV+ T+++A A++ Sbjct: 98 KLFVGNLPYDIDSEGLAQLFQ-QAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVE 156 Query: 286 AMDGVELDGRPLRLSLAAQNPPAGSTPSTA 197 +L+GR L ++ AA P GS P A Sbjct: 157 LYSQYDLNGRLLTVNKAA---PRGSRPERA 183
>ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor| Length = 315 Score = 68.9 bits (167), Expect = 7e-12 Identities = 31/76 (40%), Positives = 49/76 (64%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 284 ++Y GN WG+ L+ F +V ARV+++R+TGRSRGFGFV+ + + A+ Sbjct: 231 RIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIAN 290 Query: 283 MDGVELDGRPLRLSLA 236 +DG LDGR +R+++A Sbjct: 291 LDGQSLDGRTIRVNVA 306 Score = 57.0 bits (136), Expect = 3e-08 Identities = 31/79 (39%), Positives = 53/79 (67%), Gaps = 1/79 (1%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVG-ARVIFERDTGRSRGFGFVSFHTIQDAKAALQ 287 K++ GN + V ++ L FE Q G+V A VI+ RDT +SRGFGFV+ T+++A+ A++ Sbjct: 137 KLFVGNLPYDVDSEGLARLFE-QAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVE 195 Query: 286 AMDGVELDGRPLRLSLAAQ 230 + +++GR L ++ AA+ Sbjct: 196 MYNRYDVNGRLLTVNKAAR 214
>PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated RNA-binding protein| PUB1 (ARS consensus-binding protein ACBP-60) (Poly(U)-binding protein) (Poly uridylate-binding protein) Length = 452 Score = 65.5 bits (158), Expect = 8e-11 Identities = 31/80 (38%), Positives = 51/80 (63%) Frame = -3 Query: 469 TXKVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAAL 290 T ++ G+ V + L+ AF+ P + V+++ TG SRG+GFVSF + DA+ A+ Sbjct: 160 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAM 219 Query: 289 QAMDGVELDGRPLRLSLAAQ 230 +M G +L+GRPLR++ AA+ Sbjct: 220 DSMQGQDLNGRPLRINWAAK 239
>NUCL_XENLA (P20397) Nucleolin (Protein C23)| Length = 650 Score = 64.3 bits (155), Expect = 2e-10 Identities = 32/63 (50%), Positives = 43/63 (68%) Frame = -3 Query: 424 DALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRL 245 + LK AF+G V AR++ +RDTG S+GFGFV F T +DAKAA +AM+ E+DG + L Sbjct: 516 ETLKEAFDGS---VNARIVTDRDTGASKGFGFVDFSTAEDAKAAKEAMEDGEIDGNKVTL 572 Query: 244 SLA 236 A Sbjct: 573 DFA 575 Score = 48.1 bits (113), Expect = 1e-05 Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 2/97 (2%) Frame = -3 Query: 472 GTXKVYA-GNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKA 296 G KV N + D+L+ FE + ++ GR++GF F+ F + +DAK Sbjct: 411 GDSKVLVVNNLSYSATEDSLREVFEK-----ATSIRIPQNQGRAKGFAFIEFSSAEDAKD 465 Query: 295 ALQAMDGVELDGRPLRLSLA-AQNPPAGSTPSTAQSQ 188 A+ + + E++GR +RL + P G +AQS+ Sbjct: 466 AMDSCNNTEIEGRSIRLEFSQGGGPQGGGRGGSAQSK 502
>GAR2_SCHPO (P41891) Protein gar2| Length = 500 Score = 64.3 bits (155), Expect = 2e-10 Identities = 39/93 (41%), Positives = 51/93 (54%), Gaps = 1/93 (1%) Frame = -3 Query: 469 TXKVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAAL 290 T V+ G W V L FE +VGARVI + +GRS+G+G+V F T + AKAA+ Sbjct: 262 TCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAV 321 Query: 289 QAMDGVELDGRPLRLSLAAQNP-PAGSTPSTAQ 194 A E+DGR + L L+ NP PA P Q Sbjct: 322 AANGTKEIDGRMVNLDLS--NPRPANPQPYAQQ 352 Score = 49.7 bits (117), Expect = 4e-06 Identities = 28/83 (33%), Positives = 42/83 (50%) Frame = -3 Query: 460 VYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 281 V+ GN + D L AF G + R+ + +GR +GFG+V+F I AK ++ M Sbjct: 368 VFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVE-M 426 Query: 280 DGVELDGRPLRLSLAAQNPPAGS 212 +G + GRP RL + GS Sbjct: 427 NGHFIAGRPCRLDFSTPRTGGGS 449
>RT19_ARATH (P39697) 40S ribosomal protein S19, mitochondrial precursor| Length = 212 Score = 62.8 bits (151), Expect = 5e-10 Identities = 35/102 (34%), Positives = 59/102 (57%), Gaps = 2/102 (1%) Frame = -3 Query: 469 TXKVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAAL 290 + K+Y G G +LK AF G+ ARV+ + TGRSRG+GFV+F + A +A+ Sbjct: 30 STKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAI 89 Query: 289 QAMDGVELDGRPLRLSLAAQNP--PAGSTPSTAQSQQEKNSL 170 AM+G EL+G + +++A P P S ++++++N + Sbjct: 90 SAMNGQELNGFNISVNVAKDWPSLPLSLDESIEEAEKKENKM 131
>GRP2_SORBI (Q99070) Glycine-rich RNA-binding protein 2| Length = 168 Score = 62.4 bits (150), Expect = 7e-10 Identities = 30/83 (36%), Positives = 48/83 (57%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 284 + + G W + L+ AF ++ ++VI +R+TGRSRGFGFV+F + Q A++ Sbjct: 9 RCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIEN 68 Query: 283 MDGVELDGRPLRLSLAAQNPPAG 215 M+G ELDGR + ++ A G Sbjct: 69 MNGKELDGRNITVNQAQSRGGGG 91
>RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Coactivator of| activating protein 1 and estrogen receptors) (Coactivator of AP-1 and ERs) (Transcription coactivator CAPER) Length = 530 Score = 62.4 bits (150), Expect = 7e-10 Identities = 29/96 (30%), Positives = 54/96 (56%) Frame = -3 Query: 472 GTXKVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAA 293 G ++Y G+ + + D L+ FE + +++ + +TGRS+G+GF++F + AK A Sbjct: 248 GPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKA 307 Query: 292 LQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQ 185 L+ ++G EL GRP+++ + A S S S + Sbjct: 308 LEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDE 343
>RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (Hepatocellular| carcinoma protein 1) (Splicing factor HCC1) Length = 530 Score = 62.4 bits (150), Expect = 7e-10 Identities = 29/96 (30%), Positives = 54/96 (56%) Frame = -3 Query: 472 GTXKVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAA 293 G ++Y G+ + + D L+ FE + +++ + +TGRS+G+GF++F + AK A Sbjct: 248 GPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKA 307 Query: 292 LQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQ 185 L+ ++G EL GRP+++ + A S S S + Sbjct: 308 LEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDE 343
>CIRBP_XENLA (O93235) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (xCIRP) Length = 163 Score = 61.6 bits (148), Expect = 1e-09 Identities = 30/79 (37%), Positives = 47/79 (59%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 284 K++ G + D L+ AF + V+ +R+T RSRGFGFV+F + DAK A+ A Sbjct: 6 KLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMA 65 Query: 283 MDGVELDGRPLRLSLAAQN 227 M+G +DGR +R+ A ++ Sbjct: 66 MNGKSVDGRQIRVDQAGKS 84
>GRP1_SINAL (P49310) Glycine-rich RNA-binding protein GRP1A| Length = 166 Score = 61.2 bits (147), Expect = 1e-09 Identities = 29/83 (34%), Positives = 48/83 (57%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 284 + + G W AL+ AF ++ +++I +R+TGRSRGFGFV+F + K A++ Sbjct: 9 RCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEG 68 Query: 283 MDGVELDGRPLRLSLAAQNPPAG 215 M+G +LDGR + ++ A G Sbjct: 69 MNGQDLDGRSITVNEAQSRGSGG 91
>GRP7_ARATH (Q03250) Glycine-rich RNA-binding protein 7| Length = 176 Score = 61.2 bits (147), Expect = 1e-09 Identities = 29/83 (34%), Positives = 48/83 (57%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 284 + + G W AL+ AF ++ +++I +R+TGRSRGFGFV+F + K A++ Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68 Query: 283 MDGVELDGRPLRLSLAAQNPPAG 215 M+G +LDGR + ++ A G Sbjct: 69 MNGQDLDGRSITVNEAQSRGSGG 91
>GRP2_SINAL (P49311) Glycine-rich RNA-binding protein GRP2A| Length = 169 Score = 61.2 bits (147), Expect = 1e-09 Identities = 29/76 (38%), Positives = 47/76 (61%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 284 + + G W +L+ AF LV +++I +R+TGRSRGFGFV+F + K A++ Sbjct: 9 RCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEG 68 Query: 283 MDGVELDGRPLRLSLA 236 M+G +LDGR + ++ A Sbjct: 69 MNGQDLDGRSITVNEA 84
>GRP1_DAUCA (Q03878) Glycine-rich RNA-binding protein| Length = 157 Score = 61.2 bits (147), Expect = 1e-09 Identities = 28/83 (33%), Positives = 48/83 (57%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 284 + + G W ++L+ AF + +++I +R+TGRSRGFGFV+F + + A++ Sbjct: 7 RCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEG 66 Query: 283 MDGVELDGRPLRLSLAAQNPPAG 215 M+G ELDGR + ++ A G Sbjct: 67 MNGQELDGRNITVNEAQSRGSGG 89
>GRPA_MAIZE (P10979) Glycine-rich RNA-binding, abscisic acid-inducible protein| Length = 157 Score = 60.8 bits (146), Expect = 2e-09 Identities = 29/83 (34%), Positives = 48/83 (57%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 284 + + G W ++L+ AF ++ ++VI +R+TGRSRGFGFV+F + A++ Sbjct: 9 RCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIEN 68 Query: 283 MDGVELDGRPLRLSLAAQNPPAG 215 M+G ELDGR + ++ A G Sbjct: 69 MNGKELDGRNITVNQAQSRGGGG 91
>CIRBP_RAT (P60825) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 60.8 bits (146), Expect = 2e-09 Identities = 30/79 (37%), Positives = 46/79 (58%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 284 K++ G + AL+ F + V+ +R+T RSRGFGFV+F I DAK A+ A Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 283 MDGVELDGRPLRLSLAAQN 227 M+G +DGR +R+ A ++ Sbjct: 67 MNGKSVDGRQIRVDQAGKS 85
>CIRBP_MOUSE (P60824) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 60.8 bits (146), Expect = 2e-09 Identities = 30/79 (37%), Positives = 46/79 (58%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 284 K++ G + AL+ F + V+ +R+T RSRGFGFV+F I DAK A+ A Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 283 MDGVELDGRPLRLSLAAQN 227 M+G +DGR +R+ A ++ Sbjct: 67 MNGKSVDGRQIRVDQAGKS 85
>CIRBP_CRIGR (P60826) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 60.8 bits (146), Expect = 2e-09 Identities = 30/79 (37%), Positives = 46/79 (58%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 284 K++ G + AL+ F + V+ +R+T RSRGFGFV+F I DAK A+ A Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 283 MDGVELDGRPLRLSLAAQN 227 M+G +DGR +R+ A ++ Sbjct: 67 MNGKSVDGRQIRVDQAGKS 85
>NUCL_CHICK (P15771) Nucleolin (Protein C23)| Length = 694 Score = 60.5 bits (145), Expect = 3e-09 Identities = 29/63 (46%), Positives = 43/63 (68%) Frame = -3 Query: 424 DALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRL 245 + L+ +FEG + AR++ +RDTG S+GFGFV F + +DAKAA +AM+ E+DG + L Sbjct: 567 ETLRESFEGS---ISARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAMEDGEIDGNKVTL 623 Query: 244 SLA 236 A Sbjct: 624 DFA 626 Score = 44.7 bits (104), Expect = 1e-04 Identities = 20/65 (30%), Positives = 37/65 (56%) Frame = -3 Query: 364 ERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQ 185 + + GR +G+ FV F T +DAK AL + + E++GR +RL ++ + G+ + Q Sbjct: 491 QNNQGRPKGYAFVEFPTAEDAKEALNSCNNTEIEGRAIRLEFSSPSWQKGNMNARGGFNQ 550 Query: 184 EKNSL 170 + +L Sbjct: 551 QSKTL 555 Score = 38.1 bits (87), Expect = 0.014 Identities = 20/70 (28%), Positives = 37/70 (52%) Frame = -3 Query: 460 VYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 281 ++ N + V D +K FE + R++ ++ G S+G ++ F T +A+ AL+ Sbjct: 373 LFVKNLPYRVTEDEMKNVFENA---LEVRLVLNKE-GSSKGMAYIEFKTEAEAEKALEEK 428 Query: 280 DGVELDGRPL 251 G E+DGR + Sbjct: 429 QGTEVDGRAM 438
>NUCL_RAT (P13383) Nucleolin (Protein C23)| Length = 712 Score = 60.1 bits (144), Expect = 3e-09 Identities = 31/70 (44%), Positives = 45/70 (64%) Frame = -3 Query: 424 DALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRL 245 + LK +FEG V AR++ +R+TG S+GFGFV F++ +DAKAA +AM+ E+DG + L Sbjct: 588 ETLKESFEGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTL 644 Query: 244 SLAAQNPPAG 215 A G Sbjct: 645 DWAKPKGEGG 654 Score = 43.9 bits (102), Expect = 2e-04 Identities = 21/52 (40%), Positives = 34/52 (65%), Gaps = 2/52 (3%) Frame = -3 Query: 352 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQ--NPPAGSTPS 203 G+S+G+ F+ F + +DAK AL + + +E++GR +RL L +P A S PS Sbjct: 522 GKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPRGSPNARSQPS 573 Score = 39.3 bits (90), Expect = 0.006 Identities = 29/97 (29%), Positives = 44/97 (45%) Frame = -3 Query: 454 AGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDG 275 A N + + D LK FE V R++ + GRS+G ++ F + DA+ L+ G Sbjct: 400 AKNLSFNITEDELKEVFEDA---VEIRLVSQ--DGRSKGIAYIEFKSEADAEKNLEEKQG 454 Query: 274 VELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKNSLTW 164 E+DGR + L + Q + KNS TW Sbjct: 455 AEIDGRSVSLYYTGEK-------GQRQERTGKNS-TW 483
>NUCL_MOUSE (P09405) Nucleolin (Protein C23)| Length = 706 Score = 60.1 bits (144), Expect = 3e-09 Identities = 31/70 (44%), Positives = 45/70 (64%) Frame = -3 Query: 424 DALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRL 245 + LK +FEG V AR++ +R+TG S+GFGFV F++ +DAKAA +AM+ E+DG + L Sbjct: 582 ETLKESFEGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTL 638 Query: 244 SLAAQNPPAG 215 A G Sbjct: 639 DWAKPKGEGG 648 Score = 41.2 bits (95), Expect = 0.002 Identities = 16/42 (38%), Positives = 28/42 (66%) Frame = -3 Query: 352 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQN 227 G+ +G+ F+ F + +DAK AL + + +E++GR +RL L N Sbjct: 520 GKPKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGSN 561 Score = 37.0 bits (84), Expect = 0.030 Identities = 20/70 (28%), Positives = 32/70 (45%) Frame = -3 Query: 454 AGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDG 275 A N + + D LK FE + G+S+G ++ F + DA+ L+ G Sbjct: 398 AKNLSFNITEDELKEVFED-----AMEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQG 452 Query: 274 VELDGRPLRL 245 E+DGR + L Sbjct: 453 AEIDGRSVSL 462
>NUCL_MESAU (P08199) Nucleolin (Protein C23)| Length = 713 Score = 60.1 bits (144), Expect = 3e-09 Identities = 31/70 (44%), Positives = 45/70 (64%) Frame = -3 Query: 424 DALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRL 245 + LK +FEG V AR++ +R+TG S+GFGFV F++ +DAKAA +AM+ E+DG + L Sbjct: 585 ETLKESFEGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTL 641 Query: 244 SLAAQNPPAG 215 A G Sbjct: 642 DWAKPKGEGG 651 Score = 44.3 bits (103), Expect = 2e-04 Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 2/56 (3%) Frame = -3 Query: 364 ERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQ--NPPAGSTPS 203 + G+S+G+ F+ F + +DAK AL + + +E++GR +RL L +P A S PS Sbjct: 515 QNQQGKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPRGSPNARSQPS 570 Score = 37.4 bits (85), Expect = 0.023 Identities = 26/97 (26%), Positives = 40/97 (41%) Frame = -3 Query: 454 AGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDG 275 A N + + D LK FE + G+S+G ++ F + DA+ L+ G Sbjct: 397 AKNLSFNITEDELKEVFED-----ALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQG 451 Query: 274 VELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKNSLTW 164 E+DGR + L + Q + KNS TW Sbjct: 452 AEIDGRSVSLYYTGEK-------GQRQERTGKNS-TW 480
>TIA1_MOUSE (P52912) Nucleolysin TIA-1 (RNA-binding protein TIA-1)| Length = 386 Score = 59.7 bits (143), Expect = 4e-09 Identities = 32/92 (34%), Positives = 52/92 (56%) Frame = -3 Query: 460 VYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 281 V+ G+ + + +K AF + ARV+ + TG+S+G+GFVSF DA+ A+Q M Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167 Query: 280 DGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQ 185 G L GR +R + A + PPA + + ++Q Sbjct: 168 GGQWLGGRQIRTNWATRKPPAPKSTYESNTKQ 199 Score = 31.2 bits (69), Expect = 1.7 Identities = 18/56 (32%), Positives = 31/56 (55%) Frame = -3 Query: 358 DTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQS 191 DT + + FV FH + A AAL AM+G ++ G+ ++++ A P+ T+ S Sbjct: 41 DTAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWA--TTPSSQKKDTSSS 94
>TIA1_HUMAN (P31483) Nucleolysin TIA-1 isoform p40 (RNA-binding protein TIA-1)| (p40-TIA-1) [Contains: Nucleolysin TIA-1 isoform p15 (p15-TIA-1)] Length = 386 Score = 59.7 bits (143), Expect = 4e-09 Identities = 32/92 (34%), Positives = 52/92 (56%) Frame = -3 Query: 460 VYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 281 V+ G+ + + +K AF + ARV+ + TG+S+G+GFVSF DA+ A+Q M Sbjct: 108 VFVGDLSPQITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167 Query: 280 DGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQ 185 G L GR +R + A + PPA + + ++Q Sbjct: 168 GGQWLGGRQIRTNWATRKPPAPKSTYESNTKQ 199 Score = 31.2 bits (69), Expect = 1.7 Identities = 18/56 (32%), Positives = 31/56 (55%) Frame = -3 Query: 358 DTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQS 191 DT + + FV FH + A AAL AM+G ++ G+ ++++ A P+ T+ S Sbjct: 41 DTAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWA--TTPSSQKKDTSSS 94
>CIRBP_PONPY (Q5RF83) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) Length = 172 Score = 59.7 bits (143), Expect = 4e-09 Identities = 29/79 (36%), Positives = 46/79 (58%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 284 K++ G + +L+ F + V+ +R+T RSRGFGFV+F I DAK A+ A Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 283 MDGVELDGRPLRLSLAAQN 227 M+G +DGR +R+ A ++ Sbjct: 67 MNGKSVDGRQIRVDQAGKS 85
>CIRBP_HUMAN (Q14011) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 59.7 bits (143), Expect = 4e-09 Identities = 29/79 (36%), Positives = 46/79 (58%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 284 K++ G + +L+ F + V+ +R+T RSRGFGFV+F I DAK A+ A Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 283 MDGVELDGRPLRLSLAAQN 227 M+G +DGR +R+ A ++ Sbjct: 67 MNGKSVDGRQIRVDQAGKS 85
>RRP2_SPIOL (P82277) Plastid-specific 30S ribosomal protein 2, chloroplast| precursor (PSRP-2) Length = 260 Score = 59.3 bits (142), Expect = 6e-09 Identities = 28/98 (28%), Positives = 56/98 (57%) Frame = -3 Query: 472 GTXKVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAA 293 G ++Y GN + D L+ E + A V++++ +GRSR FGFV+ T++DA A Sbjct: 82 GARRLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDANAV 141 Query: 292 LQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEK 179 ++ ++ E+ GR +++++ + P G +T Q++ + Sbjct: 142 IEKLNDTEIGGRKIKVNI-TEKPLEGMDIATTQAEDSQ 178 Score = 54.7 bits (130), Expect = 1e-07 Identities = 29/76 (38%), Positives = 47/76 (61%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 284 KVY GN V + LK F + ++GA+V T +S GFGFVSF + ++ +AA+QA Sbjct: 185 KVYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQA 244 Query: 283 MDGVELDGRPLRLSLA 236 ++ L+G+ +R++ A Sbjct: 245 LNNSVLEGQKIRVNKA 260
>NUCL_PONPY (Q5RF26) Nucleolin| Length = 711 Score = 58.9 bits (141), Expect = 7e-09 Identities = 30/70 (42%), Positives = 45/70 (64%) Frame = -3 Query: 424 DALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRL 245 + LK +F+G V AR++ +R+TG S+GFGFV F++ +DAKAA +AM+ E+DG + L Sbjct: 587 ETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTL 643 Query: 244 SLAAQNPPAG 215 A G Sbjct: 644 DWAKPKGEGG 653 Score = 43.1 bits (100), Expect = 4e-04 Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 2/56 (3%) Frame = -3 Query: 364 ERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQ--NPPAGSTPS 203 + G+S+G+ F+ F + +DAK AL + + E++GR +RL L +P A S PS Sbjct: 517 QNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPS 572 Score = 38.9 bits (89), Expect = 0.008 Identities = 22/70 (31%), Positives = 32/70 (45%) Frame = -3 Query: 454 AGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDG 275 A N + V D LK FE A + G+S+G ++ F T DA+ + G Sbjct: 398 AKNLPYKVTQDELKEVFED-----AAEIRLVSKDGKSKGIAYIEFKTEADAEKTFEEKQG 452 Query: 274 VELDGRPLRL 245 E+DGR + L Sbjct: 453 TEIDGRSISL 462
>RBM23_HUMAN (Q86U06) Probable RNA-binding protein 23 (RNA-binding motif protein| 23) (RNA-binding region-containing protein 4) (Splicing factor SF2) Length = 439 Score = 58.9 bits (141), Expect = 7e-09 Identities = 29/97 (29%), Positives = 53/97 (54%) Frame = -3 Query: 472 GTXKVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAA 293 G ++Y G+ + + D L+ FE + ++ + DTGRS+G+GF++F + A+ A Sbjct: 261 GPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRA 320 Query: 292 LQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQE 182 L+ ++G EL GRP+R+ + G+ + QE Sbjct: 321 LEQLNGFELAGRPMRVGHVTERLDGGTDITFPDGDQE 357 Score = 28.9 bits (63), Expect = 8.2 Identities = 18/61 (29%), Positives = 30/61 (49%) Frame = -3 Query: 433 VRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRP 254 +R L+ F + R+I +R++ RS+G +V F IQ A+ + G L G P Sbjct: 177 IRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVP 235 Query: 253 L 251 + Sbjct: 236 I 236
>NUCL_MACFA (Q4R4J7) Nucleolin| Length = 710 Score = 58.9 bits (141), Expect = 7e-09 Identities = 30/70 (42%), Positives = 45/70 (64%) Frame = -3 Query: 424 DALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRL 245 + LK +F+G V AR++ +R+TG S+GFGFV F++ +DAKAA +AM+ E+DG + L Sbjct: 586 ETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTL 642 Query: 244 SLAAQNPPAG 215 A G Sbjct: 643 DWAKPKGEGG 652 Score = 43.1 bits (100), Expect = 4e-04 Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 2/56 (3%) Frame = -3 Query: 364 ERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQ--NPPAGSTPS 203 + G+S+G+ F+ F + +DAK AL + + E++GR +RL L +P A S PS Sbjct: 516 QNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPS 571 Score = 38.9 bits (89), Expect = 0.008 Identities = 22/70 (31%), Positives = 32/70 (45%) Frame = -3 Query: 454 AGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDG 275 A N + V D LK FE A + G+S+G ++ F T DA+ + G Sbjct: 397 AKNLPYKVTQDELKEVFED-----AAEIRLVSKDGKSKGIAYIEFKTEADAEKTFEEKQG 451 Query: 274 VELDGRPLRL 245 E+DGR + L Sbjct: 452 TEIDGRSISL 461
>NUCL_HUMAN (P19338) Nucleolin (Protein C23)| Length = 709 Score = 58.9 bits (141), Expect = 7e-09 Identities = 30/70 (42%), Positives = 45/70 (64%) Frame = -3 Query: 424 DALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRL 245 + LK +F+G V AR++ +R+TG S+GFGFV F++ +DAKAA +AM+ E+DG + L Sbjct: 585 ETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTL 641 Query: 244 SLAAQNPPAG 215 A G Sbjct: 642 DWAKPKGEGG 651 Score = 43.1 bits (100), Expect = 4e-04 Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 2/56 (3%) Frame = -3 Query: 364 ERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQ--NPPAGSTPS 203 + G+S+G+ F+ F + +DAK AL + + E++GR +RL L +P A S PS Sbjct: 515 QNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPS 570 Score = 38.9 bits (89), Expect = 0.008 Identities = 22/70 (31%), Positives = 32/70 (45%) Frame = -3 Query: 454 AGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDG 275 A N + V D LK FE A + G+S+G ++ F T DA+ + G Sbjct: 396 AKNLPYKVTQDELKEVFED-----AAEIRLVSKDGKSKGIAYIEFKTEADAEKTFEEKQG 450 Query: 274 VELDGRPLRL 245 E+DGR + L Sbjct: 451 TEIDGRSISL 460
>TIAR_MOUSE (P70318) Nucleolysin TIAR (TIA-1-related protein)| Length = 392 Score = 58.2 bits (139), Expect = 1e-08 Identities = 31/92 (33%), Positives = 51/92 (55%) Frame = -3 Query: 460 VYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 281 V+ G+ + + +K AF + ARV+ + TG+S+G+GFVSF+ DA+ A+ M Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175 Query: 280 DGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQ 185 G L GR +R + A + PPA + ++Q Sbjct: 176 GGQWLGGRQIRTNWATRKPPAPKSTQETNTKQ 207
>TIAR_HUMAN (Q01085) Nucleolysin TIAR (TIA-1-related protein)| Length = 375 Score = 57.8 bits (138), Expect = 2e-08 Identities = 33/94 (35%), Positives = 51/94 (54%) Frame = -3 Query: 460 VYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 281 V+ G+ + + +K AF + ARV+ + TG+S+G+GFVSF+ DA+ A+ M Sbjct: 99 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 158 Query: 280 DGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEK 179 G L GR +R + A + PPA P + Q K Sbjct: 159 GGQWLGGRQIRTNWATRKPPA---PKSTQENNTK 189
>TRA2A_MOUSE (Q6PFR5) Transformer-2 protein homolog (TRA-2 alpha)| Length = 281 Score = 57.0 bits (136), Expect = 3e-08 Identities = 28/71 (39%), Positives = 41/71 (57%) Frame = -3 Query: 418 LKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSL 239 L+ F L G V++++ TGRSRGF FV F I D+K A++ +G+ELDGR +R+ Sbjct: 133 LREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVDY 192 Query: 238 AAQNPPAGSTP 206 + TP Sbjct: 193 SITKRAHTPTP 203
>GRP10_BRANA (Q05966) Glycine-rich RNA-binding protein 10| Length = 169 Score = 57.0 bits (136), Expect = 3e-08 Identities = 28/83 (33%), Positives = 45/83 (54%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 284 + + G W L+ F ++ +++I +R+TGRSRGFGFV+F + K A+ Sbjct: 7 RCFVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDE 66 Query: 283 MDGVELDGRPLRLSLAAQNPPAG 215 M+G ELDGR + ++ A G Sbjct: 67 MNGKELDGRTITVNEAQSRGGGG 89
>TRA2A_HUMAN (Q13595) Transformer-2 protein homolog (TRA-2 alpha)| Length = 282 Score = 57.0 bits (136), Expect = 3e-08 Identities = 28/71 (39%), Positives = 41/71 (57%) Frame = -3 Query: 418 LKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSL 239 L+ F L G V++++ TGRSRGF FV F I D+K A++ +G+ELDGR +R+ Sbjct: 135 LREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVDY 194 Query: 238 AAQNPPAGSTP 206 + TP Sbjct: 195 SITKRAHTPTP 205
>GRP8_ARATH (Q03251) Glycine-rich RNA-binding protein 8 (CCR1 protein)| Length = 169 Score = 56.6 bits (135), Expect = 4e-08 Identities = 26/83 (31%), Positives = 47/83 (56%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 284 + + G W + L+ F ++ +++I +R++GRSRGFGFV+F + + A++ Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66 Query: 283 MDGVELDGRPLRLSLAAQNPPAG 215 M+G ELDGR + ++ A G Sbjct: 67 MNGKELDGRVITVNEAQSRGSGG 89
>SFRS2_RAT (Q6PDU1) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) Length = 220 Score = 56.2 bits (134), Expect = 5e-08 Identities = 32/87 (36%), Positives = 43/87 (49%) Frame = -3 Query: 472 GTXKVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAA 293 G + N + D L+ FE + + +R T SRGF FV FH +DA+ A Sbjct: 11 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDA 70 Query: 292 LQAMDGVELDGRPLRLSLAAQNPPAGS 212 + AMDG LDGR LR+ +A P S Sbjct: 71 MDAMDGAVLDGRELRVQMARYGRPPDS 97
>SFRS2_PANTR (Q5R1W5) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) Length = 220 Score = 56.2 bits (134), Expect = 5e-08 Identities = 32/87 (36%), Positives = 43/87 (49%) Frame = -3 Query: 472 GTXKVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAA 293 G + N + D L+ FE + + +R T SRGF FV FH +DA+ A Sbjct: 11 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDA 70 Query: 292 LQAMDGVELDGRPLRLSLAAQNPPAGS 212 + AMDG LDGR LR+ +A P S Sbjct: 71 MDAMDGAVLDGRELRVQMARYGRPPDS 97
>SFRS2_MOUSE (Q62093) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) (Putative myelin regulatory factor 1) (MRF-1) Length = 220 Score = 56.2 bits (134), Expect = 5e-08 Identities = 32/87 (36%), Positives = 43/87 (49%) Frame = -3 Query: 472 GTXKVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAA 293 G + N + D L+ FE + + +R T SRGF FV FH +DA+ A Sbjct: 11 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDA 70 Query: 292 LQAMDGVELDGRPLRLSLAAQNPPAGS 212 + AMDG LDGR LR+ +A P S Sbjct: 71 MDAMDGAVLDGRELRVQMARYGRPPDS 97
>SFRS2_HUMAN (Q01130) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) Length = 220 Score = 56.2 bits (134), Expect = 5e-08 Identities = 32/87 (36%), Positives = 43/87 (49%) Frame = -3 Query: 472 GTXKVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAA 293 G + N + D L+ FE + + +R T SRGF FV FH +DA+ A Sbjct: 11 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDA 70 Query: 292 LQAMDGVELDGRPLRLSLAAQNPPAGS 212 + AMDG LDGR LR+ +A P S Sbjct: 71 MDAMDGAVLDGRELRVQMARYGRPPDS 97
>SFRS2_CHICK (P30352) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) Length = 221 Score = 56.2 bits (134), Expect = 5e-08 Identities = 32/87 (36%), Positives = 43/87 (49%) Frame = -3 Query: 472 GTXKVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAA 293 G + N + D L+ FE + + +R T SRGF FV FH +DA+ A Sbjct: 12 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDA 71 Query: 292 LQAMDGVELDGRPLRLSLAAQNPPAGS 212 + AMDG LDGR LR+ +A P S Sbjct: 72 MDAMDGAVLDGRELRVQMARYGRPPDS 98
>RBM3_HUMAN (P98179) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) (RNPL) Length = 157 Score = 53.9 bits (128), Expect = 2e-07 Identities = 27/79 (34%), Positives = 45/79 (56%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 284 K++ G + AL+ F + V+ +R+T RSRGFGF++F + A A++A Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRA 66 Query: 283 MDGVELDGRPLRLSLAAQN 227 M+G LDGR +R+ A ++ Sbjct: 67 MNGESLDGRQIRVDHAGKS 85
>GRP1_SORBI (Q99069) Glycine-rich RNA-binding protein 1 (Fragment)| Length = 142 Score = 53.9 bits (128), Expect = 2e-07 Identities = 25/63 (39%), Positives = 44/63 (69%) Frame = -3 Query: 424 DALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRL 245 ++L AF ++ +++I +R+T RSRGFGFV+F T + ++A++ M+G ELDGR + + Sbjct: 1 NSLHSAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRSAIEGMNGKELDGRNITV 60 Query: 244 SLA 236 + A Sbjct: 61 NEA 63
>RBM3_MOUSE (O89086) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) Length = 153 Score = 53.1 bits (126), Expect = 4e-07 Identities = 27/79 (34%), Positives = 45/79 (56%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 284 K++ G + AL+ F + V+ +R+T RSRGFGF++F + A A++A Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRA 66 Query: 283 MDGVELDGRPLRLSLAAQN 227 M+G LDGR +R+ A ++ Sbjct: 67 MNGESLDGRQIRVDHAGKS 85
>TRA2B_RAT (P62997) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) (RA301) Length = 288 Score = 52.8 bits (125), Expect = 5e-07 Identities = 24/71 (33%), Positives = 39/71 (54%) Frame = -3 Query: 418 LKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSL 239 L+ F + +++++ + RSRGF FV F + DAK A + +G+ELDGR +R+ Sbjct: 134 LREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 193 Query: 238 AAQNPPAGSTP 206 + P TP Sbjct: 194 SITKRPHTPTP 204
>TRA2B_MOUSE (P62996) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) (Silica-induced gene 41 protein) (SIG-41) Length = 288 Score = 52.8 bits (125), Expect = 5e-07 Identities = 24/71 (33%), Positives = 39/71 (54%) Frame = -3 Query: 418 LKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSL 239 L+ F + +++++ + RSRGF FV F + DAK A + +G+ELDGR +R+ Sbjct: 134 LREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 193 Query: 238 AAQNPPAGSTP 206 + P TP Sbjct: 194 SITKRPHTPTP 204
>TRA2B_HUMAN (P62995) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) Length = 288 Score = 52.8 bits (125), Expect = 5e-07 Identities = 24/71 (33%), Positives = 39/71 (54%) Frame = -3 Query: 418 LKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSL 239 L+ F + +++++ + RSRGF FV F + DAK A + +G+ELDGR +R+ Sbjct: 134 LREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 193 Query: 238 AAQNPPAGSTP 206 + P TP Sbjct: 194 SITKRPHTPTP 204
>YDB2_SCHPO (Q10355) Hypothetical RNA-binding protein C22E12.02 in chromosome I| Length = 219 Score = 52.8 bits (125), Expect = 5e-07 Identities = 31/98 (31%), Positives = 50/98 (51%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 284 +++ GN G V ++L AF P LV +V+ +R+ G++RGFGFVSF A + Sbjct: 31 RLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDRE-GKTRGFGFVSFKDSDQFLKAWRE 89 Query: 283 MDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKNSL 170 +G + RP++LS A + + +NSL Sbjct: 90 KNGKYIGSRPVKLSRATSDVKPNEVNEKTIDSKIRNSL 127
>CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 616 Score = 52.4 bits (124), Expect = 7e-07 Identities = 24/76 (31%), Positives = 44/76 (57%) Frame = -3 Query: 460 VYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 281 V+ GN + + LK F +V R++++R+TG+ +G+GF + + A +A++ + Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77 Query: 280 DGVELDGRPLRLSLAA 233 +G E GR LR+ AA Sbjct: 78 NGREFSGRALRVDNAA 93
>CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 632 Score = 52.4 bits (124), Expect = 7e-07 Identities = 24/76 (31%), Positives = 44/76 (57%) Frame = -3 Query: 460 VYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 281 V+ GN + + LK F +V R++++R+TG+ +G+GF + + A +A++ + Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77 Query: 280 DGVELDGRPLRLSLAA 233 +G E GR LR+ AA Sbjct: 78 NGREFSGRALRVDNAA 93
>CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 572 Score = 51.6 bits (122), Expect = 1e-06 Identities = 24/76 (31%), Positives = 44/76 (57%) Frame = -3 Query: 460 VYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 281 V+ GN + + LK F +V R++++R+TG+ +G+GF + + A +A++ + Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77 Query: 280 DGVELDGRPLRLSLAA 233 +G E GR LR+ AA Sbjct: 78 NGREFSGRALRVDNAA 93
>CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 51.6 bits (122), Expect = 1e-06 Identities = 24/76 (31%), Positives = 44/76 (57%) Frame = -3 Query: 460 VYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 281 V+ GN + + LK F +V R++++R+TG+ +G+GF + + A +A++ + Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77 Query: 280 DGVELDGRPLRLSLAA 233 +G E GR LR+ AA Sbjct: 78 NGREFSGRALRVDNAA 93
>CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 51.6 bits (122), Expect = 1e-06 Identities = 24/76 (31%), Positives = 44/76 (57%) Frame = -3 Query: 460 VYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 281 V+ GN + + LK F +V R++++R+TG+ +G+GF + + A +A++ + Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77 Query: 280 DGVELDGRPLRLSLAA 233 +G E GR LR+ AA Sbjct: 78 NGREFSGRALRVDNAA 93
>CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 580 Score = 51.6 bits (122), Expect = 1e-06 Identities = 24/76 (31%), Positives = 44/76 (57%) Frame = -3 Query: 460 VYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 281 V+ GN + + LK F +V R++++R+TG+ +G+GF + + A +A++ + Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77 Query: 280 DGVELDGRPLRLSLAA 233 +G E GR LR+ AA Sbjct: 78 NGREFSGRALRVDNAA 93
>RBPA_SYNY3 (Q57014) Putative RNA-binding protein rbpA| Length = 101 Score = 50.8 bits (120), Expect = 2e-06 Identities = 26/75 (34%), Positives = 40/75 (53%) Frame = -3 Query: 460 VYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 281 +Y GN + V L F + ++ +R+TGR RGFGFV + AA++A+ Sbjct: 3 IYVGNLSYDVSEADLTAVFAEYGSVKRVQLPTDRETGRMRGFGFVELEADAEETAAIEAL 62 Query: 280 DGVELDGRPLRLSLA 236 DG E GR L+++ A Sbjct: 63 DGAEWMGRDLKVNKA 77
>MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing protein 1| Length = 841 Score = 50.1 bits (118), Expect = 3e-06 Identities = 34/98 (34%), Positives = 47/98 (47%), Gaps = 5/98 (5%) Frame = -3 Query: 469 TXKVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERD---TGR--SRGFGFVSFHTIQD 305 T V+ N + AL F+ PG V A V + D +G+ S GFGFV F T + Sbjct: 616 TVAVFVKNLNFATTVQALSDLFKPLPGFVVATVKTKPDPKNSGKTLSMGFGFVEFRTKEQ 675 Query: 304 AKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQS 191 A A+ +DG LDG L+L L+ + S S +S Sbjct: 676 ANVAISTLDGHVLDGHKLQLKLSHKQGTGTSASSIKKS 713 Score = 38.9 bits (89), Expect = 0.008 Identities = 17/41 (41%), Positives = 28/41 (68%) Frame = -3 Query: 346 SRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNP 224 +RGF FV F+ +++A+ A+ ++GV L GR L + A Q+P Sbjct: 756 ARGFAFVEFNLMKEAETAMSQLEGVHLLGRRLVMQYAEQDP 796 Score = 33.9 bits (76), Expect = 0.26 Identities = 18/75 (24%), Positives = 34/75 (45%) Frame = -3 Query: 469 TXKVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAAL 290 T +++ N + + + F L + + TG+S+GF +V F +DA A Sbjct: 309 TGRLFIRNISYEASEEDFRSLFSQYGALEEVHIAIDTRTGKSKGFLYVQFLKKEDATRAY 368 Query: 289 QAMDGVELDGRPLRL 245 +++D GR L + Sbjct: 369 RSLDKQIFQGRLLHI 383
>MRD1_CANGA (Q6FXP4) Multiple RNA-binding domain-containing protein 1| Length = 861 Score = 49.3 bits (116), Expect = 6e-06 Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 5/96 (5%) Frame = -3 Query: 484 VVXXGTXKVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGR-----SRGFGFVSF 320 VV T ++ N + + L F+ G V A+V + D + S GFGFV F Sbjct: 634 VVDGPTVSIFIKNLNFKTTSQQLTDRFKVFSGFVVAQVKTKPDPKQKNKVLSMGFGFVEF 693 Query: 319 HTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGS 212 T + A A + AMDG +DG ++L L+ + AGS Sbjct: 694 RTKEQATAVISAMDGTVIDGHKIQLKLSHRQGNAGS 729 Score = 30.4 bits (67), Expect = 2.8 Identities = 16/39 (41%), Positives = 23/39 (58%) Frame = -3 Query: 346 SRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQ 230 +RGF FV F ++A+ A+ + GV L GR L + A Q Sbjct: 777 ARGFAFVEFVLPKEAENAMDQLQGVHLLGRRLVMQPAEQ 815 Score = 28.9 bits (63), Expect = 8.2 Identities = 19/71 (26%), Positives = 33/71 (46%) Frame = -3 Query: 391 GLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGS 212 GL+ I + G+SR F F+ + QDA A+ DG + + + +A + + Sbjct: 37 GLITDLRILKNREGKSRRFAFIGYKNEQDALDAVNYFDGSFIYTSKIEVDMA----KSFA 92 Query: 211 TPSTAQSQQEK 179 P +S +EK Sbjct: 93 DPRVPKSMKEK 103
>PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PABP 2) Length = 629 Score = 49.3 bits (116), Expect = 6e-06 Identities = 27/83 (32%), Positives = 45/83 (54%) Frame = -3 Query: 472 GTXKVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAA 293 G +Y G+ + V L AF +V RV + T RS G+G+V+F QDA A Sbjct: 34 GNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARA 93 Query: 292 LQAMDGVELDGRPLRLSLAAQNP 224 +Q ++ + L G+P+R+ + ++P Sbjct: 94 IQELNYIPLYGKPIRVMYSHRDP 116 Score = 47.0 bits (110), Expect = 3e-05 Identities = 24/68 (35%), Positives = 39/68 (57%) Frame = -3 Query: 460 VYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 281 VY N D LK AF G+ G + + V+ + G+S+GFGFV+F DA A++++ Sbjct: 217 VYVKNLAESTTDDDLKNAF-GEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESL 275 Query: 280 DGVELDGR 257 +G + D + Sbjct: 276 NGHKFDDK 283 Score = 37.4 bits (85), Expect = 0.023 Identities = 21/78 (26%), Positives = 39/78 (50%) Frame = -3 Query: 469 TXKVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAAL 290 + +Y N + + LK F G V + + G S+G GFV+F T ++A A+ Sbjct: 317 SSNLYVKNLDPSISDEKLKEIFSPF-GTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAM 375 Query: 289 QAMDGVELDGRPLRLSLA 236 + G ++ +PL +++A Sbjct: 376 SQLSGKMIESKPLYVAIA 393 Score = 34.3 bits (77), Expect = 0.20 Identities = 17/72 (23%), Positives = 37/72 (51%) Frame = -3 Query: 472 GTXKVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAA 293 G ++ N + AL F +V +V + +G+S+G+GFV + + A+ A Sbjct: 122 GAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVD-SSGQSKGYGFVQYANEESAQKA 180 Query: 292 LQAMDGVELDGR 257 ++ ++G+ L+ + Sbjct: 181 IEKLNGMLLNDK 192
>HNRPG_HUMAN (P38159) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) (Glycoprotein p43) Length = 391 Score = 48.9 bits (115), Expect = 8e-06 Identities = 25/78 (32%), Positives = 43/78 (55%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 284 K++ G AL+ F +V ++ +R+T +SRGF FV+F + DAK A + Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68 Query: 283 MDGVELDGRPLRLSLAAQ 230 M+G LDG+ +++ A + Sbjct: 69 MNGKSLDGKAIKVEQATK 86
>PABPB_XENLA (Q6IP09) Polyadenylate-binding protein 1-B (Poly(A)-binding protein| 1-B) (Cytoplasmic poly(A)-binding protein 1-B) (PABP-B) (PABP 1-B) (xPABP1-B) Length = 633 Score = 48.1 bits (113), Expect = 1e-05 Identities = 28/70 (40%), Positives = 41/70 (58%) Frame = -3 Query: 460 VYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 281 VY N G + + LK F GQ G + + D G+SRGFGFVSF +DA+ A+ M Sbjct: 193 VYIKNFGEDMDDERLKEWF-GQYGAALSVKVMTDDHGKSRGFGFVSFERHEDAQKAVDDM 251 Query: 280 DGVELDGRPL 251 +G +L+G+ + Sbjct: 252 NGKDLNGKAI 261 Score = 42.0 bits (97), Expect = 0.001 Identities = 25/75 (33%), Positives = 42/75 (56%) Frame = -3 Query: 460 VYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 281 +Y N G+ + L+ F + A+V+ E GRS+GFGFV F + ++A A+ M Sbjct: 296 LYVKNLDDGIDDERLRKEFTPFGSITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEM 353 Query: 280 DGVELDGRPLRLSLA 236 +G + +PL ++LA Sbjct: 354 NGRIVATKPLYVALA 368 Score = 35.0 bits (79), Expect = 0.11 Identities = 20/72 (27%), Positives = 35/72 (48%) Frame = -3 Query: 472 GTXKVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAA 293 G ++ N + AL F ++ +V+ D S+G+GFV F T + A+ A Sbjct: 97 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC--DENGSKGYGFVHFETQEAAERA 154 Query: 292 LQAMDGVELDGR 257 + M+G+ L+ R Sbjct: 155 IDKMNGMLLNDR 166
>RSP4_CAEEL (Q09511) Probable splicing factor, arginine/serine-rich 4| (RNA-binding protein srp-2) (CeSC35) Length = 196 Score = 47.4 bits (111), Expect = 2e-05 Identities = 26/85 (30%), Positives = 45/85 (52%) Frame = -3 Query: 472 GTXKVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAA 293 G + N + + L+ FE + + ++ + +S+GFGFV F+ +DA+ A Sbjct: 17 GLTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHA 76 Query: 292 LQAMDGVELDGRPLRLSLAAQNPPA 218 L DG +DGR LR++LA + P+ Sbjct: 77 LDRTDGKLVDGRELRVTLAKYDRPS 101
>EPAB_XENTR (Q6DEY7) Embryonic polyadenylate-binding protein (Embryonic poly(A)| binding protein) (ePABP) Length = 629 Score = 47.4 bits (111), Expect = 2e-05 Identities = 26/75 (34%), Positives = 43/75 (57%) Frame = -3 Query: 460 VYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 281 VY N G + L+ F + +V+ + DTGRSRGFGFV++ ++A+ A+ M Sbjct: 193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMD-DTGRSRGFGFVNYGNHEEAQKAVSEM 251 Query: 280 DGVELDGRPLRLSLA 236 +G E++GR + + A Sbjct: 252 NGKEVNGRMIYVGRA 266 Score = 42.0 bits (97), Expect = 0.001 Identities = 25/75 (33%), Positives = 41/75 (54%) Frame = -3 Query: 460 VYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 281 +Y N G+ D L+ F + A+V+ E G S+GFGFV F + ++A A+ M Sbjct: 296 LYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEM 353 Query: 280 DGVELDGRPLRLSLA 236 +G + +PL ++LA Sbjct: 354 NGRIVSTKPLYVALA 368 Score = 37.7 bits (86), Expect = 0.018 Identities = 23/72 (31%), Positives = 35/72 (48%) Frame = -3 Query: 472 GTXKVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAA 293 G V+ N + AL F ++ +V+ D SRG+GFV F T + A A Sbjct: 97 GVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVC--DEHGSRGYGFVHFETQEAANRA 154 Query: 292 LQAMDGVELDGR 257 +Q M+G+ L+ R Sbjct: 155 IQTMNGMLLNDR 166
>SCE3_SCHPO (O14369) Probable RNA-binding protein sce3| Length = 388 Score = 47.4 bits (111), Expect = 2e-05 Identities = 26/77 (33%), Positives = 45/77 (58%) Frame = -3 Query: 391 GLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGS 212 G+ R++ + T RSRGFG+V F T AAL A+ G +L GRP+R+++A Sbjct: 117 GVTSIRLVIDPLTERSRGFGYVEFETADTLSAAL-ALSGEDLMGRPVRITVA-------- 167 Query: 211 TPSTAQSQQEKNSLTWI 161 P + +++E+++ W+ Sbjct: 168 EPRRSFAREERSTGDWV 184
>HNRPG_RAT (P84586) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 47.0 bits (110), Expect = 3e-05 Identities = 24/78 (30%), Positives = 42/78 (53%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 284 K++ G AL+ F +V ++ +R+T +SRGF FV+F + DAK + Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARD 68 Query: 283 MDGVELDGRPLRLSLAAQ 230 M+G LDG+ +++ A + Sbjct: 69 MNGKSLDGKAIKVEQATK 86
>MRD1_KLULA (Q6CQR6) Multiple RNA-binding domain-containing protein 1| Length = 878 Score = 47.0 bits (110), Expect = 3e-05 Identities = 31/104 (29%), Positives = 52/104 (50%), Gaps = 5/104 (4%) Frame = -3 Query: 469 TXKVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGR-----SRGFGFVSFHTIQD 305 T ++ N + + L F+ G V A+V + D + S GFGF F T + Sbjct: 650 TVSIFIKNLNFSTTSQQLTEKFKPFNGFVVAQVKTKPDPKQPGKTLSMGFGFAEFKTKEQ 709 Query: 304 AKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKNS 173 A A + AM+G LDG L+L L+ + G++ + A S+++K + Sbjct: 710 ANAVISAMEGTILDGHKLQLKLSHRQ---GTSTTNASSKKKKKN 750 Score = 33.1 bits (74), Expect = 0.44 Identities = 16/41 (39%), Positives = 24/41 (58%) Frame = -3 Query: 346 SRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNP 224 +RGF FV F ++A+ A+ + GV L GR L + Q+P Sbjct: 791 ARGFAFVEFLLPKEAENAMDQLQGVHLLGRRLVMEFVEQDP 831 Score = 30.8 bits (68), Expect = 2.2 Identities = 18/75 (24%), Positives = 31/75 (41%) Frame = -3 Query: 469 TXKVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAAL 290 T +++ N + D + F L + + TG+S+GF +V F +A A Sbjct: 329 TGRLFLRNILYTATEDDFRKLFSPYGELEEVHIAVDTRTGQSKGFAYVLFKNADNAATAF 388 Query: 289 QAMDGVELDGRPLRL 245 +D GR L + Sbjct: 389 VELDKQIFQGRLLHI 403
>YDC1_SCHPO (Q10422) Hypothetical RNA-binding protein C25G10.01 in chromosome I| Length = 297 Score = 47.0 bits (110), Expect = 3e-05 Identities = 25/76 (32%), Positives = 42/76 (55%) Frame = -3 Query: 433 VRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRP 254 ++ D L+ F + R++ E T SRGFGF+SF T+++A +A+ ++ E GR Sbjct: 112 MQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNLNSQEFYGRV 171 Query: 253 LRLSLAAQNPPAGSTP 206 L + A ++ P TP Sbjct: 172 LNVQKAKRSRPHSPTP 187
>PABP3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) (Testis-specific poly(A)-binding protein) Length = 631 Score = 47.0 bits (110), Expect = 3e-05 Identities = 29/98 (29%), Positives = 52/98 (53%) Frame = -3 Query: 460 VYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 281 VY N G + + LK F G+ G + + ++G+S+GFGFVSF +DA+ A+ M Sbjct: 193 VYIKNFGEDMDDERLKDLF-GKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 251 Query: 280 DGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKNSLT 167 +G EL+G+ + + A + + Q +++ +T Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRIT 289 Score = 43.5 bits (101), Expect = 3e-04 Identities = 26/75 (34%), Positives = 43/75 (57%) Frame = -3 Query: 460 VYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 281 +Y N G+ + L+ AF + A+V+ E GRS+GFGFV F + ++A A+ M Sbjct: 296 LYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEM 353 Query: 280 DGVELDGRPLRLSLA 236 +G + +PL ++LA Sbjct: 354 NGRIVATKPLYVALA 368 Score = 35.8 bits (81), Expect = 0.067 Identities = 20/72 (27%), Positives = 35/72 (48%) Frame = -3 Query: 472 GTXKVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAA 293 G ++ N + AL ++ V+ D S+G+GFV F T + A+ A Sbjct: 97 GVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVC--DENGSKGYGFVHFETHEAAERA 154 Query: 292 LQAMDGVELDGR 257 ++ M+G+ L+GR Sbjct: 155 IKKMNGMLLNGR 166
>MRD1_ASHGO (Q75A83) Multiple RNA-binding domain-containing protein 1| Length = 838 Score = 46.6 bits (109), Expect = 4e-05 Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 5/104 (4%) Frame = -3 Query: 469 TXKVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRS-----RGFGFVSFHTIQD 305 T ++ N + + L F+ G V A+V + D S GFGF+ F T + Sbjct: 611 TVSIFVKNLNFSTTSAQLAEKFKPFSGFVVAQVKTKPDPKNSDKKLSMGFGFIEFRTKEQ 670 Query: 304 AKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKNS 173 A A + AMDG +DG ++L ++ + S P T++ ++K S Sbjct: 671 AGAVIAAMDGAVIDGHKIQLKISHKQ---SSLPKTSKGSKKKIS 711 Score = 30.8 bits (68), Expect = 2.2 Identities = 16/39 (41%), Positives = 22/39 (56%) Frame = -3 Query: 346 SRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQ 230 +RGF FV F +A+ A+ + GV L GR L + A Q Sbjct: 751 ARGFAFVEFLLPSEAENAMDQLQGVHLLGRRLVMQYAEQ 789
>MRD1_SCHPO (O13620) Multiple RNA-binding domain-containing protein 1| Length = 833 Score = 46.6 bits (109), Expect = 4e-05 Identities = 30/104 (28%), Positives = 46/104 (44%), Gaps = 5/104 (4%) Frame = -3 Query: 469 TXKVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGR-----SRGFGFVSFHTIQD 305 T +Y N + + + + F+ G + A + + D R S GFGFV F Sbjct: 618 TATIYVKNLNFSTKQEEFQKVFKPLEGYLSAVIRAKPDPKRPGKYLSMGFGFVEFKDKAS 677 Query: 304 AKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKNS 173 A AA+ AM+G LDG L + L+ Q A + S + K + Sbjct: 678 AVAAMHAMNGFVLDGHKLEIKLSHQGVDAAAEVRKQDSSKPKGT 721 Score = 34.7 bits (78), Expect = 0.15 Identities = 19/75 (25%), Positives = 31/75 (41%) Frame = -3 Query: 469 TXKVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAAL 290 T +++ N + D LK F L + ++ T +GF ++ FH DA A Sbjct: 322 TKRLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAY 381 Query: 289 QAMDGVELDGRPLRL 245 +D GR L + Sbjct: 382 LELDAKPFQGRLLHV 396 Score = 29.6 bits (65), Expect = 4.8 Identities = 15/38 (39%), Positives = 22/38 (57%) Frame = -3 Query: 346 SRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAA 233 +RGF F F T ++A A++A+ L GR L L A+ Sbjct: 760 ARGFAFAEFVTAREAANAMRALKNTHLLGRHLVLQYAS 797
>PABP1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 46.6 bits (109), Expect = 4e-05 Identities = 27/75 (36%), Positives = 44/75 (58%) Frame = -3 Query: 460 VYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 281 VY N G + + LK F G+ G + + ++G+S+GFGFVSF +DA+ A+ M Sbjct: 193 VYIKNFGEDMDDERLKELF-GKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 251 Query: 280 DGVELDGRPLRLSLA 236 +G EL+G+ + + A Sbjct: 252 NGKELNGKQIYVGRA 266 Score = 41.6 bits (96), Expect = 0.001 Identities = 25/75 (33%), Positives = 42/75 (56%) Frame = -3 Query: 460 VYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 281 +Y N G+ + L+ F + A+V+ E GRS+GFGFV F + ++A A+ M Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEM 353 Query: 280 DGVELDGRPLRLSLA 236 +G + +PL ++LA Sbjct: 354 NGRIVATKPLYVALA 368 Score = 35.8 bits (81), Expect = 0.067 Identities = 20/72 (27%), Positives = 36/72 (50%) Frame = -3 Query: 472 GTXKVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAA 293 G ++ N + AL F ++ +V+ D S+G+GFV F T + A+ A Sbjct: 97 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC--DENGSKGYGFVHFETQEAAERA 154 Query: 292 LQAMDGVELDGR 257 ++ M+G+ L+ R Sbjct: 155 IEKMNGMLLNDR 166
>PABP1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 46.6 bits (109), Expect = 4e-05 Identities = 27/75 (36%), Positives = 44/75 (58%) Frame = -3 Query: 460 VYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 281 VY N G + + LK F G+ G + + ++G+S+GFGFVSF +DA+ A+ M Sbjct: 193 VYIKNFGEDMDDERLKELF-GKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 251 Query: 280 DGVELDGRPLRLSLA 236 +G EL+G+ + + A Sbjct: 252 NGKELNGKQIYVGRA 266 Score = 41.6 bits (96), Expect = 0.001 Identities = 25/75 (33%), Positives = 42/75 (56%) Frame = -3 Query: 460 VYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 281 +Y N G+ + L+ F + A+V+ E GRS+GFGFV F + ++A A+ M Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEM 353 Query: 280 DGVELDGRPLRLSLA 236 +G + +PL ++LA Sbjct: 354 NGRIVATKPLYVALA 368 Score = 35.8 bits (81), Expect = 0.067 Identities = 20/72 (27%), Positives = 36/72 (50%) Frame = -3 Query: 472 GTXKVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAA 293 G ++ N + AL F ++ +V+ D S+G+GFV F T + A+ A Sbjct: 97 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC--DENGSKGYGFVHFETQEAAERA 154 Query: 292 LQAMDGVELDGR 257 ++ M+G+ L+ R Sbjct: 155 IEKMNGMLLNDR 166
>PABP1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 46.6 bits (109), Expect = 4e-05 Identities = 27/75 (36%), Positives = 44/75 (58%) Frame = -3 Query: 460 VYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 281 VY N G + + LK F G+ G + + ++G+S+GFGFVSF +DA+ A+ M Sbjct: 193 VYIKNFGEDMDDERLKDLF-GKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 251 Query: 280 DGVELDGRPLRLSLA 236 +G EL+G+ + + A Sbjct: 252 NGKELNGKQIYVGRA 266 Score = 41.6 bits (96), Expect = 0.001 Identities = 25/75 (33%), Positives = 42/75 (56%) Frame = -3 Query: 460 VYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 281 +Y N G+ + L+ F + A+V+ E GRS+GFGFV F + ++A A+ M Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEM 353 Query: 280 DGVELDGRPLRLSLA 236 +G + +PL ++LA Sbjct: 354 NGRIVATKPLYVALA 368 Score = 35.8 bits (81), Expect = 0.067 Identities = 20/72 (27%), Positives = 36/72 (50%) Frame = -3 Query: 472 GTXKVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAA 293 G ++ N + AL F ++ +V+ D S+G+GFV F T + A+ A Sbjct: 97 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC--DENGSKGYGFVHFETQEAAERA 154 Query: 292 LQAMDGVELDGR 257 ++ M+G+ L+ R Sbjct: 155 IEKMNGMLLNDR 166
>PABP1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 46.6 bits (109), Expect = 4e-05 Identities = 27/75 (36%), Positives = 44/75 (58%) Frame = -3 Query: 460 VYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 281 VY N G + + LK F G+ G + + ++G+S+GFGFVSF +DA+ A+ M Sbjct: 193 VYIKNFGEDMDDERLKDLF-GKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 251 Query: 280 DGVELDGRPLRLSLA 236 +G EL+G+ + + A Sbjct: 252 NGKELNGKQIYVGRA 266 Score = 41.6 bits (96), Expect = 0.001 Identities = 25/75 (33%), Positives = 42/75 (56%) Frame = -3 Query: 460 VYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 281 +Y N G+ + L+ F + A+V+ E GRS+GFGFV F + ++A A+ M Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEM 353 Query: 280 DGVELDGRPLRLSLA 236 +G + +PL ++LA Sbjct: 354 NGRIVATKPLYVALA 368 Score = 35.8 bits (81), Expect = 0.067 Identities = 20/72 (27%), Positives = 36/72 (50%) Frame = -3 Query: 472 GTXKVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAA 293 G ++ N + AL F ++ +V+ D S+G+GFV F T + A+ A Sbjct: 97 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC--DENGSKGYGFVHFETQEAAERA 154 Query: 292 LQAMDGVELDGR 257 ++ M+G+ L+ R Sbjct: 155 IEKMNGMLLNDR 166
>MRD1_YEAST (Q06106) Multiple RNA-binding domain-containing protein 1| Length = 887 Score = 46.2 bits (108), Expect = 5e-05 Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 6/108 (5%) Frame = -3 Query: 484 VVXXGTXKVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGR-----SRGFGFVSF 320 V+ T ++ N + L F+ G V A+V + D S GFGFV F Sbjct: 657 VIDGPTVSIFIKNLNFSTTNQNLTDRFKVFTGFVVAQVKTKPDPKHQGKTLSMGFGFVEF 716 Query: 319 HTIQDAKAALQAMDGVELDGRPLRLSLA-AQNPPAGSTPSTAQSQQEK 179 T + A A + AMDG +DG ++L L+ Q +G+T + + + K Sbjct: 717 RTKEQANAVIAAMDGTVIDGHKIQLKLSHRQASQSGNTKTKSNKKSGK 764 Score = 30.0 bits (66), Expect = 3.7 Identities = 15/40 (37%), Positives = 24/40 (60%) Frame = -3 Query: 346 SRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQN 227 +RGF FV F ++A+ A+ + GV L GR L + A ++ Sbjct: 802 ARGFAFVEFLLPKEAENAMDQLHGVHLLGRRLVMQYAEED 841 Score = 30.0 bits (66), Expect = 3.7 Identities = 19/72 (26%), Positives = 34/72 (47%) Frame = -3 Query: 394 PGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAG 215 P L+ I G SR FGF+ + +DA A++ +G ++ + +S+A + Sbjct: 40 PDLITDVKILRDRNGESRRFGFIGYRNEEDAFDAVEYFNGSFINTSKIEVSMA----KSF 95 Query: 214 STPSTAQSQQEK 179 + P Q +EK Sbjct: 96 ADPRVPQPMKEK 107
>CSX1_SCHPO (O13759) RNA-binding post-transcriptional regulator csx1| Length = 632 Score = 46.2 bits (108), Expect = 5e-05 Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 8/83 (9%) Frame = -3 Query: 394 PGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA------- 236 P A++I + TG SR +GFV F + ++ + AL M G GRPLR+S+A Sbjct: 207 PSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALMHMQGYLCQGRPLRISVASPKSRAS 266 Query: 235 -AQNPPAGSTPSTAQSQQEKNSL 170 A + G P++ ++Q L Sbjct: 267 IAADSALGIVPTSTSNRQPNQDL 289
>PABPA_XENLA (P20965) Polyadenylate-binding protein 1-A (Poly(A)-binding protein| 1-A) (Cytoplasmic poly(A)-binding protein 1-A) (PABP-A) (PABP 1-A) (xPABP1-A) Length = 633 Score = 46.2 bits (108), Expect = 5e-05 Identities = 25/70 (35%), Positives = 41/70 (58%) Frame = -3 Query: 460 VYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 281 VY N G + + LK F G+ G + + D G+S+GFGFVSF +DA+ A+ M Sbjct: 193 VYIKNFGDDMNDERLKEMF-GKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEM 251 Query: 280 DGVELDGRPL 251 +G +++G+ + Sbjct: 252 NGKDMNGKSM 261 Score = 40.4 bits (93), Expect = 0.003 Identities = 25/75 (33%), Positives = 42/75 (56%) Frame = -3 Query: 460 VYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 281 +Y N G+ + L+ F + A+V+ E GRS+GFGFV F + ++A A+ M Sbjct: 296 LYVKNLDDGIDDERLRKEFLPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEM 353 Query: 280 DGVELDGRPLRLSLA 236 +G + +PL ++LA Sbjct: 354 NGRIVATKPLYVALA 368 Score = 35.0 bits (79), Expect = 0.11 Identities = 20/72 (27%), Positives = 35/72 (48%) Frame = -3 Query: 472 GTXKVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAA 293 G ++ N + AL F ++ +V+ D S+G+GFV F T + A+ A Sbjct: 97 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC--DENGSKGYGFVHFETQEAAERA 154 Query: 292 LQAMDGVELDGR 257 + M+G+ L+ R Sbjct: 155 IDKMNGMLLNDR 166
>YAG3_SCHPO (Q09868) Hypothetical RNA-binding protein C12G12.03 in chromosome I| Length = 576 Score = 46.2 bits (108), Expect = 5e-05 Identities = 23/63 (36%), Positives = 36/63 (57%) Frame = -3 Query: 358 DTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEK 179 D G RG F +FH+ ++AK +Q ++G E+ GR LR+ Q PPA + +QEK Sbjct: 268 DNGVFRGLAFANFHSPEEAKTVVQVLNGYEITGRRLRVEWKRQLPPA-ERERVERGKQEK 326 Query: 178 NSL 170 ++ Sbjct: 327 RAV 329
>TRA2_DROME (P19018) Transformer-2 sex-determining protein| Length = 264 Score = 46.2 bits (108), Expect = 5e-05 Identities = 21/66 (31%), Positives = 36/66 (54%) Frame = -3 Query: 376 RVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTA 197 +++ + T RSRGF F+ F + DA+AA + G+E+DGR +R+ + TP Sbjct: 127 QMVIDAQTQRSRGFCFIYFEKLSDARAAKDSCSGIEVDGRRIRVDFSITQRAHTPTPGVY 186 Query: 196 QSQQEK 179 +Q + Sbjct: 187 LGRQPR 192
>EPABA_XENLA (Q98SP8) Embryonic polyadenylate-binding protein-A (Embryonic| poly(A) binding protein-A) (ePABP-A) (ePAB-A) (XePABP-A) Length = 629 Score = 45.8 bits (107), Expect = 6e-05 Identities = 25/75 (33%), Positives = 43/75 (57%) Frame = -3 Query: 460 VYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 281 VY N G + L+ F + +V+ + D+GRSRGFGFV++ ++A+ A+ M Sbjct: 193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMD-DSGRSRGFGFVNYGNHEEAQKAVSEM 251 Query: 280 DGVELDGRPLRLSLA 236 +G E++GR + + A Sbjct: 252 NGKEVNGRMIYVGRA 266 Score = 40.8 bits (94), Expect = 0.002 Identities = 25/75 (33%), Positives = 41/75 (54%) Frame = -3 Query: 460 VYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 281 +Y N G+ D L+ F + A+V+ E G S+GFGFV F + ++A A+ M Sbjct: 296 LYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEM 353 Query: 280 DGVELDGRPLRLSLA 236 +G + +PL ++LA Sbjct: 354 NGRIVSTKPLYVALA 368 Score = 37.7 bits (86), Expect = 0.018 Identities = 23/72 (31%), Positives = 35/72 (48%) Frame = -3 Query: 472 GTXKVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAA 293 G V+ N + AL F ++ +V+ D SRG+GFV F T + A A Sbjct: 97 GVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVC--DEHGSRGYGFVHFETHEAANRA 154 Query: 292 LQAMDGVELDGR 257 +Q M+G+ L+ R Sbjct: 155 IQTMNGMLLNDR 166
>HNRPG_MOUSE (O35479) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 45.8 bits (107), Expect = 6e-05 Identities = 24/78 (30%), Positives = 42/78 (53%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 284 K++ G AL+ F +V ++ +R+T +SRGF FV+ + DAK A + Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEIILMKDRETNKSRGFAFVTLESPADAKDAARD 68 Query: 283 MDGVELDGRPLRLSLAAQ 230 M+G LDG+ +++ A + Sbjct: 69 MNGKSLDGKAIKVEQATK 86
>MRD1_USTMA (Q4PC17) Multiple RNA-binding domain-containing protein 1| Length = 858 Score = 45.4 bits (106), Expect = 8e-05 Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 5/89 (5%) Frame = -3 Query: 460 VYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGR-----SRGFGFVSFHTIQDAKA 296 +Y N + + L F G AR+ + D R S G+GFV F +I A+ Sbjct: 623 LYVKNLSFSTTDERLTAFFHGLSDFAFARIQTKPDPRRPGARLSMGYGFVGFKSIDAART 682 Query: 295 ALQAMDGVELDGRPLRLSLAAQNPPAGST 209 A +AMDG LD L ++ A +N A +T Sbjct: 683 AQKAMDGKVLDAHTLVVTFARRNAEASTT 711 Score = 38.9 bits (89), Expect = 0.008 Identities = 28/98 (28%), Positives = 47/98 (47%) Frame = -3 Query: 472 GTXKVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAA 293 G+ K+ N + ++ F Q L R+ + D +RGFGFV + T+++A++A Sbjct: 717 GSTKILIKNLPFEATKRDIRDLFSSQGQLKSVRLPKKFDN-TTRGFGFVEYSTVREAQSA 775 Query: 292 LQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEK 179 ++A+ L GR L L + A ST Q+ K Sbjct: 776 MEALKHTHLLGRHLVLQWSHL---ASSTQQQVDMQRSK 810 Score = 38.5 bits (88), Expect = 0.010 Identities = 28/106 (26%), Positives = 45/106 (42%), Gaps = 7/106 (6%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 284 +++ N + D + FE + + ++ T S+G FVSF A AA +A Sbjct: 315 RLFIRNLPFAASGDEILAFFESFGTVKQVHIPLDKQTKASKGLAFVSFSDPAHALAAYRA 374 Query: 283 MDGVELDGRPLRL-------SLAAQNPPAGSTPSTAQSQQEKNSLT 167 DG GR L L +LA +T A+++Q+K T Sbjct: 375 KDGSTFQGRLLHLLPAVNKDALAETGSKKTATLKQARAEQKKQDAT 420
>MRD1_NEUCR (Q7SG09) Multiple RNA-binding domain-containing protein 1| Length = 827 Score = 45.1 bits (105), Expect = 1e-04 Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 5/78 (6%) Frame = -3 Query: 469 TXKVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGR-----SRGFGFVSFHTIQD 305 T ++ N + + L AF+ G V A+V + D + S GFGFV+F T Sbjct: 598 TSSLFVRNLNFSTTSQGLTDAFKHLDGFVQAKVKTKTDPKKPGQVLSMGFGFVAFRTKDQ 657 Query: 304 AKAALQAMDGVELDGRPL 251 A+AAL+ MDG LD + Sbjct: 658 AQAALKVMDGQVLDAHKI 675 Score = 28.9 bits (63), Expect = 8.2 Identities = 20/76 (26%), Positives = 33/76 (43%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 284 K+ N + V ++ F LV R+ ++ SRGF F F T ++A A + Sbjct: 705 KLVVKNLPFEVTKKEVRTLFSAYGKLVALRIP-KKFNQSSRGFAFAEFSTAKEALNAFNS 763 Query: 283 MDGVELDGRPLRLSLA 236 + + GR L + A Sbjct: 764 LKDTHILGRRLVIDFA 779
>MRD1_ASPFU (Q4WJT7) Multiple RNA-binding domain-containing protein 1| Length = 825 Score = 44.7 bits (104), Expect = 1e-04 Identities = 28/78 (35%), Positives = 37/78 (47%), Gaps = 5/78 (6%) Frame = -3 Query: 469 TXKVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGR-----SRGFGFVSFHTIQD 305 T ++ N + + F+ G V AR+ + D R S GFGFV F T Sbjct: 596 TSTLFVKNLNFSTTNERFTEVFKPLDGFVSARIKTKPDPKRPGKTLSMGFGFVDFRTKAQ 655 Query: 304 AKAALQAMDGVELDGRPL 251 A+AAL AMDG +LD L Sbjct: 656 AQAALAAMDGYKLDQHEL 673 Score = 30.8 bits (68), Expect = 2.2 Identities = 15/37 (40%), Positives = 22/37 (59%) Frame = -3 Query: 346 SRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 236 +RGFGF F + ++A+ A+ A+ L GR L L A Sbjct: 741 ARGFGFADFVSAREAENAMDALKNTHLLGRRLVLEFA 777
>PABP_DROME (P21187) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 634 Score = 44.7 bits (104), Expect = 1e-04 Identities = 24/75 (32%), Positives = 42/75 (56%) Frame = -3 Query: 460 VYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 281 +Y N + D L+ AF + A+V+ + + GRS+GFGFV F+ +A A+ + Sbjct: 289 LYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEE-GRSKGFGFVCFNAASEATCAVTEL 347 Query: 280 DGVELDGRPLRLSLA 236 +G + +PL ++LA Sbjct: 348 NGRVVGSKPLYVALA 362 Score = 44.7 bits (104), Expect = 1e-04 Identities = 27/76 (35%), Positives = 46/76 (60%), Gaps = 1/76 (1%) Frame = -3 Query: 460 VYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 281 VY N + LK FE + +V+ + D G+S+GFGFV+F T + A+AA+QA+ Sbjct: 185 VYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKED-GKSKGFGFVAFETTEAAEAAVQAL 243 Query: 280 DGVEL-DGRPLRLSLA 236 +G ++ +G+ L ++ A Sbjct: 244 NGKDMGEGKSLYVARA 259 Score = 34.7 bits (78), Expect = 0.15 Identities = 18/72 (25%), Positives = 36/72 (50%) Frame = -3 Query: 472 GTXKVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAA 293 G V+ N + A+ F ++ +V + + G S+G+GFV F T + A + Sbjct: 88 GVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATD-EKGNSKGYGFVHFETEEAANTS 146 Query: 292 LQAMDGVELDGR 257 + ++G+ L+G+ Sbjct: 147 IDKVNGMLLNGK 158
>SAP49_SCHPO (O14102) Spliceosome-associated protein 49| Length = 335 Score = 44.3 bits (103), Expect = 2e-04 Identities = 26/82 (31%), Positives = 42/82 (51%) Frame = -3 Query: 460 VYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 281 ++ GN V L F LV A + + GRS+G+GFVS+ + + A AA++AM Sbjct: 101 LFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAM 160 Query: 280 DGVELDGRPLRLSLAAQNPPAG 215 + L +P+ +S A + G Sbjct: 161 NNQFLMNKPITVSYAFKREGKG 182 Score = 35.8 bits (81), Expect = 0.067 Identities = 23/78 (29%), Positives = 37/78 (47%) Frame = -3 Query: 460 VYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 281 +Y GN V L +V + +R GFGF F QD + A Q + Sbjct: 13 IYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQIL 72 Query: 280 DGVELDGRPLRLSLAAQN 227 + V+L G+P+R++ A+Q+ Sbjct: 73 NQVKLFGKPIRVNRASQD 90
>EPABB_XENLA (Q6GR16) Embryonic polyadenylate-binding protein-B (Embryonic| poly(A) binding protein-B) (ePABP-B) (ePAB-B) (XePABP-B) Length = 629 Score = 44.3 bits (103), Expect = 2e-04 Identities = 24/68 (35%), Positives = 40/68 (58%) Frame = -3 Query: 460 VYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 281 VY N G + LK F + +V+ + ++GRSRGFGFV++ ++A+ A+ M Sbjct: 193 VYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMD-NSGRSRGFGFVNYGNHEEAQKAVTEM 251 Query: 280 DGVELDGR 257 +G E++GR Sbjct: 252 NGKEVNGR 259 Score = 40.4 bits (93), Expect = 0.003 Identities = 24/75 (32%), Positives = 40/75 (53%) Frame = -3 Query: 460 VYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 281 +Y N G+ D L+ F + +V+ E G S+GFGFV F + ++A A+ M Sbjct: 296 LYVKNLDDGIDDDRLRKEFSPYGTITSTKVMTEG--GHSKGFGFVCFSSPEEATKAVTEM 353 Query: 280 DGVELDGRPLRLSLA 236 +G + +PL ++LA Sbjct: 354 NGRIVSTKPLYVALA 368 Score = 36.6 bits (83), Expect = 0.039 Identities = 23/72 (31%), Positives = 35/72 (48%) Frame = -3 Query: 472 GTXKVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAA 293 G V+ N + AL F ++ +V+ D SRG+GFV F T + A A Sbjct: 97 GVGNVFIKNLDDSIDNKALYDTFSAFGDILSCKVVC--DEYGSRGYGFVHFETQEAANRA 154 Query: 292 LQAMDGVELDGR 257 +Q M+G+ L+ R Sbjct: 155 IQTMNGMLLNDR 166
>RSP3_CAEEL (Q9NEW6) Probable splicing factor, arginine/serine-rich 3 (CeSF2)| (CeSF2/ASF) Length = 258 Score = 43.9 bits (102), Expect = 2e-04 Identities = 28/83 (33%), Positives = 38/83 (45%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 284 KVY GN VR ++ F G + +GR F FV F +DA+ A++A Sbjct: 10 KVYVGNLPGDVREKEVEDIFHKY----GRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRA 65 Query: 283 MDGVELDGRPLRLSLAAQNPPAG 215 DG E DGR +R+ P G Sbjct: 66 RDGYEFDGRRIRVEFTRGVGPRG 88
>PABP4_HUMAN (Q13310) Polyadenylate-binding protein 4 (Poly(A)-binding protein| 4) (PABP 4) (Inducible poly(A)-binding protein) (iPABP) (Activated-platelet protein 1) (APP-1) Length = 644 Score = 43.9 bits (102), Expect = 2e-04 Identities = 25/68 (36%), Positives = 38/68 (55%) Frame = -3 Query: 460 VYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 281 VY N G V ++LK F Q G + + G+S+GFGFVS+ +DA A++ M Sbjct: 193 VYIKNFGEEVDDESLKELFS-QFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEM 251 Query: 280 DGVELDGR 257 +G E+ G+ Sbjct: 252 NGKEISGK 259 Score = 40.4 bits (93), Expect = 0.003 Identities = 24/75 (32%), Positives = 41/75 (54%) Frame = -3 Query: 460 VYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 281 +Y N + + L+ F + A+V+ E GRS+GFGFV F + ++A A+ M Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 353 Query: 280 DGVELDGRPLRLSLA 236 +G + +PL ++LA Sbjct: 354 NGRIVGSKPLYVALA 368 Score = 33.1 bits (74), Expect = 0.44 Identities = 20/72 (27%), Positives = 34/72 (47%) Frame = -3 Query: 472 GTXKVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAA 293 G V+ N + AL F ++ +V+ D S+G+ FV F T + A A Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC--DENGSKGYAFVHFETQEAADKA 154 Query: 292 LQAMDGVELDGR 257 ++ M+G+ L+ R Sbjct: 155 IEKMNGMLLNDR 166
>RNA15_YEAST (P25299) mRNA 3'-end-processing protein RNA15| Length = 296 Score = 43.5 bits (101), Expect = 3e-04 Identities = 21/97 (21%), Positives = 52/97 (53%) Frame = -3 Query: 460 VYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 281 VY G+ + + + ++ +++F+ TGRS+G+ F+ F ++ + +A++ + Sbjct: 20 VYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNL 79 Query: 280 DGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKNSL 170 +G +L R L+ ++ + +G + Q QQ+ N++ Sbjct: 80 NGYQLGSRFLKCGYSSNSDISG---VSQQQQQQYNNI 113
>PPIE_MOUSE (Q9QZH3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 301 Score = 43.5 bits (101), Expect = 3e-04 Identities = 25/75 (33%), Positives = 38/75 (50%) Frame = -3 Query: 460 VYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 281 +Y G V L AF + ++ + +T + RGF FV F +DA AA+ M Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67 Query: 280 DGVELDGRPLRLSLA 236 + EL GR +R++LA Sbjct: 68 NESELFGRTIRVNLA 82
>PPIE_HUMAN (Q9UNP9) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 301 Score = 43.5 bits (101), Expect = 3e-04 Identities = 25/75 (33%), Positives = 38/75 (50%) Frame = -3 Query: 460 VYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 281 +Y G V L AF + ++ + +T + RGF FV F +DA AA+ M Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67 Query: 280 DGVELDGRPLRLSLA 236 + EL GR +R++LA Sbjct: 68 NESELFGRTIRVNLA 82
>EWS_MOUSE (Q61545) RNA-binding protein EWS| Length = 655 Score = 43.1 bits (100), Expect = 4e-04 Identities = 22/63 (34%), Positives = 36/63 (57%) Frame = -3 Query: 400 GQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPP 221 GQP + + +++TG+ +G VS+ AKAA++ DG + G L++SLA + PP Sbjct: 393 GQPMI---HIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKKPP 449 Query: 220 AGS 212 S Sbjct: 450 MNS 452
>EWS_HUMAN (Q01844) RNA-binding protein EWS (EWS oncogene) (Ewing sarcoma| breakpoint region 1 protein) Length = 656 Score = 43.1 bits (100), Expect = 4e-04 Identities = 22/63 (34%), Positives = 36/63 (57%) Frame = -3 Query: 400 GQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPP 221 GQP + + +++TG+ +G VS+ AKAA++ DG + G L++SLA + PP Sbjct: 394 GQPMI---HIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKKPP 450 Query: 220 AGS 212 S Sbjct: 451 MNS 453
>MRD1_YARLI (Q6CEW9) Multiple RNA-binding domain-containing protein 1| Length = 828 Score = 43.1 bits (100), Expect = 4e-04 Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 5/83 (6%) Frame = -3 Query: 469 TXKVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGR-----SRGFGFVSFHTIQD 305 + V+ N + + L AF+ G + A+V + D+ S GFGFV F + + Sbjct: 604 STSVFVKNLNFKTTSRVLTDAFKALDGFLVAQVKMKPDSKNKGKFLSMGFGFVEFSSKEA 663 Query: 304 AKAALQAMDGVELDGRPLRLSLA 236 A+ A +AMDG LDG L+L ++ Sbjct: 664 AEIAQKAMDGHVLDGHKLQLKIS 686 Score = 32.3 bits (72), Expect = 0.74 Identities = 19/75 (25%), Positives = 33/75 (44%) Frame = -3 Query: 469 TXKVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAAL 290 T +++ N + + + + F L + TG+ +GF V F ++A AA Sbjct: 300 TGRLFLRNLLYTAKEEDFRQLFSQYGELEEVHLPINTKTGQCKGFAHVQFEDPENAIAAY 359 Query: 289 QAMDGVELDGRPLRL 245 +A DG GR L + Sbjct: 360 EAQDGKIFQGRLLHI 374 Score = 30.8 bits (68), Expect = 2.2 Identities = 15/37 (40%), Positives = 22/37 (59%) Frame = -3 Query: 346 SRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 236 SRGF F + + ++A+ A+ A+ G L GR L L A Sbjct: 742 SRGFAFAEYVSAKEAEHAMSALQGTHLLGRRLVLQYA 778
>RBY1A_HUMAN (Q15414) RNA-binding motif protein, Y chromosome, family 1 member| A1 (RNA-binding motif protein 1) Length = 496 Score = 42.7 bits (99), Expect = 5e-04 Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 9/93 (9%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 284 K++ G LK F G+ G + ++ + T +SRGF F++F DAK A + Sbjct: 9 KLFIGGLNRETNEKMLKAVF-GKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKD 67 Query: 283 MDGVELDGRPLRLSLA---------AQNPPAGS 212 M+G L G+ +++ A + PPA S Sbjct: 68 MNGKSLHGKAIKVEQAKKPSFQSGGRRRPPASS 100
>PABP3_ARATH (O64380) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) Length = 660 Score = 42.4 bits (98), Expect = 7e-04 Identities = 22/65 (33%), Positives = 37/65 (56%) Frame = -3 Query: 460 VYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 281 VY N + D L+ F G+ G++ + V+ +G SR FGFV+F + A +A++ M Sbjct: 231 VYVKNLPKEIGEDELRKTF-GKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKM 289 Query: 280 DGVEL 266 +G+ L Sbjct: 290 NGISL 294 Score = 40.0 bits (92), Expect = 0.004 Identities = 24/75 (32%), Positives = 39/75 (52%) Frame = -3 Query: 460 VYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 281 +Y N V + LK F + ++V+ G SRGFGFV++ ++A AL M Sbjct: 334 LYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQ-GMSRGFGFVAYSNPEEALRALSEM 392 Query: 280 DGVELDGRPLRLSLA 236 +G + +PL ++LA Sbjct: 393 NGKMIGRKPLYIALA 407 Score = 35.4 bits (80), Expect = 0.088 Identities = 19/72 (26%), Positives = 37/72 (51%) Frame = -3 Query: 472 GTXKVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAA 293 G ++ N + AL F ++ +V + TGRS+G+GFV F + A+AA Sbjct: 134 GKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDV-TGRSKGYGFVQFEKEESAQAA 192 Query: 292 LQAMDGVELDGR 257 + ++G+ ++ + Sbjct: 193 IDKLNGMLMNDK 204
>SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-associated| protein 49) (SAP 49) (SF3b50) (Pre-mRNA-splicing factor SF3b 49 kDa subunit) Length = 424 Score = 42.4 bits (98), Expect = 7e-04 Identities = 19/60 (31%), Positives = 36/60 (60%) Frame = -3 Query: 376 RVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTA 197 +++ + DTG S+G+ F++F + + AA++AM+G L RP+ +S A + G +A Sbjct: 131 KIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSA 190 Score = 42.0 bits (97), Expect = 0.001 Identities = 24/76 (31%), Positives = 42/76 (55%) Frame = -3 Query: 460 VYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 281 VY G V L F +V + +R TG+ +G+GFV F + +DA A++ M Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74 Query: 280 DGVELDGRPLRLSLAA 233 + ++L G+P+R++ A+ Sbjct: 75 NMIKLYGKPIRVNKAS 90
>TRA2_DROVI (O02008) Transformer-2 sex-determining protein| Length = 272 Score = 42.4 bits (98), Expect = 7e-04 Identities = 20/57 (35%), Positives = 32/57 (56%) Frame = -3 Query: 376 RVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTP 206 +++ + T RSRGF F+ F + DA+ A A G+E+DGR +R+ + TP Sbjct: 135 QMVIDAHTHRSRGFCFIYFENLGDARVAKDACTGMEVDGRRIRVDYSITQRAHTPTP 191
>HRP1_YEAST (Q99383) Nuclear polyadenylated RNA-binding protein 4 (Cleavage| factor IB) (CFIB) Length = 534 Score = 42.0 bits (97), Expect = 0.001 Identities = 18/50 (36%), Positives = 31/50 (62%) Frame = -3 Query: 469 TXKVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSF 320 T K++ G G VR + F ++ A+++ ++DTG+SRGFGFV++ Sbjct: 242 TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTY 291 Score = 38.9 bits (89), Expect = 0.008 Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 3/70 (4%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFH---TIQDAKAA 293 K++ G W D L+ F + +++ + TGRSRGFGF+SF ++ + Sbjct: 160 KMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT 219 Query: 292 LQAMDGVELD 263 +DG +D Sbjct: 220 QHILDGKVID 229
>PABP5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 668 Score = 42.0 bits (97), Expect = 0.001 Identities = 23/65 (35%), Positives = 37/65 (56%) Frame = -3 Query: 460 VYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 281 VY N + D LK F G+ G + + V+ + +G SR FGFV+F + + A A++ M Sbjct: 227 VYVKNLPKEITDDELKKTF-GKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKM 285 Query: 280 DGVEL 266 +G+ L Sbjct: 286 NGISL 290 Score = 39.7 bits (91), Expect = 0.005 Identities = 23/75 (30%), Positives = 39/75 (52%) Frame = -3 Query: 460 VYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 281 +Y N V + LK F + +V+ G SRGFGFV++ ++A A++ M Sbjct: 330 LYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQ-GLSRGFGFVAYSNPEEALLAMKEM 388 Query: 280 DGVELDGRPLRLSLA 236 +G + +PL ++LA Sbjct: 389 NGKMIGRKPLYVALA 403 Score = 34.7 bits (78), Expect = 0.15 Identities = 20/72 (27%), Positives = 36/72 (50%) Frame = -3 Query: 472 GTXKVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAA 293 G V+ N + AL F ++ +V + GRS+G+GFV F + A+AA Sbjct: 130 GKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMDV-VGRSKGYGFVQFEKEETAQAA 188 Query: 292 LQAMDGVELDGR 257 + ++G+ L+ + Sbjct: 189 IDKLNGMLLNDK 200 Score = 34.7 bits (78), Expect = 0.15 Identities = 14/44 (31%), Positives = 29/44 (65%) Frame = -3 Query: 355 TGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNP 224 T RS G+ +V+F +DA A+++++ + RP+R+ L+ ++P Sbjct: 81 THRSLGYAYVNFANPEDASRAMESLNYAPIRDRPIRIMLSNRDP 124
>RNPC1_HUMAN (Q9H0Z9) RNA-binding region-containing protein 1 (HSRNASEB) (ssDNA| binding protein SEB4) (CLL-associated antigen KW-5) Length = 216 Score = 42.0 bits (97), Expect = 0.001 Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 2/78 (2%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 284 K++ G + +L+ FEG + A VI +R TG+SRG+GFV T+ D AA +A Sbjct: 12 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFV---TMADRAAAERA 68 Query: 283 MDGVE--LDGRPLRLSLA 236 +DGR ++LA Sbjct: 69 CKDPNPIIDGRKANVNLA 86
>ROA1_RAT (P04256) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (HDP) Length = 319 Score = 42.0 bits (97), Expect = 0.001 Identities = 23/69 (33%), Positives = 40/69 (57%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 284 K++ G + ++L+ FE L V+ + +T RSRGFGFV++ T+++ AA+ A Sbjct: 14 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 73 Query: 283 MDGVELDGR 257 ++DGR Sbjct: 74 RPH-KVDGR 81
>ROA1_MOUSE (P49312) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) (HDP-1) (Topoisomerase-inhibitor suppressed) Length = 319 Score = 42.0 bits (97), Expect = 0.001 Identities = 23/69 (33%), Positives = 40/69 (57%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 284 K++ G + ++L+ FE L V+ + +T RSRGFGFV++ T+++ AA+ A Sbjct: 14 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 73 Query: 283 MDGVELDGR 257 ++DGR Sbjct: 74 RPH-KVDGR 81
>MRD1_CRYNE (Q5KJL5) Multiple RNA-binding domain-containing protein 1| Length = 769 Score = 42.0 bits (97), Expect = 0.001 Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 5/58 (8%) Frame = -3 Query: 394 PGLVGARVIFERDTGR-----SRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 236 PG ARV + D R S G+GFV F T + A AL+A++G E+DG+ L + A Sbjct: 559 PGFSFARVQMKPDPKRPGEKLSMGYGFVGFKTKEAATKALKALEGFEIDGKSLEVKFA 616 Score = 35.0 bits (79), Expect = 0.11 Identities = 19/75 (25%), Positives = 34/75 (45%) Frame = -3 Query: 469 TXKVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAAL 290 T +++ N + +++L F + + + TG G F+ FH +DA AA Sbjct: 220 TSRLFVRNLAFITTSESLSSHFSTYGRIDECHLPVSQTTGEPLGTAFLQFHNAEDALAAY 279 Query: 289 QAMDGVELDGRPLRL 245 +A+D GR L + Sbjct: 280 KALDKTIFQGRLLHV 294
>ROA1_HUMAN (P09651) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) Length = 371 Score = 42.0 bits (97), Expect = 0.001 Identities = 23/69 (33%), Positives = 40/69 (57%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 284 K++ G + ++L+ FE L V+ + +T RSRGFGFV++ T+++ AA+ A Sbjct: 14 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 73 Query: 283 MDGVELDGR 257 ++DGR Sbjct: 74 RPH-KVDGR 81
>MYEF2_HUMAN (Q9P2K5) Myelin expression factor 2 (MyEF-2) (MST156)| Length = 600 Score = 42.0 bits (97), Expect = 0.001 Identities = 23/73 (31%), Positives = 38/73 (52%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 284 +V+ N + ++ A+K + G V +F+ G+SRG G V F + K AL+ Sbjct: 101 RVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALET 160 Query: 283 MDGVELDGRPLRL 245 M+ +L GRPL + Sbjct: 161 MNKYDLSGRPLNI 173 Score = 32.3 bits (72), Expect = 0.74 Identities = 19/75 (25%), Positives = 39/75 (52%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 284 +++ N + + LK F ++ A + E G+S+G G V F + + A+ A + Sbjct: 524 QIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMEN--GKSKGCGTVRFDSPESAEKACRI 581 Query: 283 MDGVELDGRPLRLSL 239 M+G+++ GR + + L Sbjct: 582 MNGIKISGREIDVRL 596 Score = 32.0 bits (71), Expect = 0.97 Identities = 23/80 (28%), Positives = 36/80 (45%) Frame = -3 Query: 460 VYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 281 ++ N + V LK F G V I E G+SRG G V+F +A A+ Sbjct: 235 IFVANLDFKVGWKKLKEVFS-IAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMF 293 Query: 280 DGVELDGRPLRLSLAAQNPP 221 +G L RP+ + + ++ P Sbjct: 294 NGQFLFDRPMHVKMDDKSVP 313
>MYEF2_MOUSE (Q8C854) Myelin expression factor 2 (MyEF-2) (MEF-2)| Length = 591 Score = 42.0 bits (97), Expect = 0.001 Identities = 23/73 (31%), Positives = 38/73 (52%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 284 +V+ N + ++ A+K + G V +F+ G+SRG G V F + K AL+ Sbjct: 92 RVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALET 151 Query: 283 MDGVELDGRPLRL 245 M+ +L GRPL + Sbjct: 152 MNKYDLSGRPLNI 164 Score = 33.5 bits (75), Expect = 0.33 Identities = 19/75 (25%), Positives = 39/75 (52%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 284 +++ N + + LK F ++ A + E G+S+G G V F + + A+ A + Sbjct: 515 QIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMEN--GKSKGCGTVRFESAESAEKACRI 572 Query: 283 MDGVELDGRPLRLSL 239 M+G+++ GR + + L Sbjct: 573 MNGIKISGREIDVRL 587 Score = 32.0 bits (71), Expect = 0.97 Identities = 23/80 (28%), Positives = 36/80 (45%) Frame = -3 Query: 460 VYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 281 ++ N + V LK F G V I E G+SRG G V+F +A A+ Sbjct: 226 IFVANLDFKVGWKKLKEVFS-IAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMF 284 Query: 280 DGVELDGRPLRLSLAAQNPP 221 +G L RP+ + + ++ P Sbjct: 285 NGQFLFDRPMHVKMDDKSVP 304
>PUF68_DROME (Q8T6B9) Poly U-binding splicing factor half pint (68 kDa poly| U-binding splicing factor) (Protein half pint) (PUF60 homolog) Length = 637 Score = 42.0 bits (97), Expect = 0.001 Identities = 21/92 (22%), Positives = 45/92 (48%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 284 +VY G+ + ++ D ++ AF + + ++ T + +GF FV + + A+ AL+ Sbjct: 131 RVYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLALEQ 190 Query: 283 MDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQ 188 M+G + GR +++ + P A Q + Sbjct: 191 MNGALMGGRNIKVGRPSNMPQAQQVIDEVQEE 222
>ROA1_BOVIN (P09867) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (Unwinding protein 1) (UP1) (Fragment) Length = 195 Score = 42.0 bits (97), Expect = 0.001 Identities = 23/69 (33%), Positives = 40/69 (57%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 284 K++ G + ++L+ FE L V+ + +T RSRGFGFV++ T+++ AA+ A Sbjct: 14 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 73 Query: 283 MDGVELDGR 257 ++DGR Sbjct: 74 RPH-KVDGR 81
>RNPC1_MOUSE (Q62176) RNA-binding region-containing protein 1 (ssDNA binding| protein SEB4) Length = 237 Score = 41.6 bits (96), Expect = 0.001 Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 2/78 (2%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 284 K++ G + +L+ FEG + A VI +R TG+SRG+GFV T+ D AA +A Sbjct: 33 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFV---TMADRAAADRA 89 Query: 283 MDGVE--LDGRPLRLSLA 236 +DGR ++LA Sbjct: 90 CKDPNPIIDGRKANVNLA 107
>PABPX_ARATH (Q9ZQA8) Probable polyadenylate-binding protein At2g36660| (Poly(A)-binding protein At2g36660) (PABP) Length = 609 Score = 41.2 bits (95), Expect = 0.002 Identities = 23/75 (30%), Positives = 40/75 (53%) Frame = -3 Query: 460 VYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 281 +Y N V + L+ F Q G + + + + G+S+GFGFV F T ++A A++ Sbjct: 306 IYVKNVNVAVTEEELRKHFS-QCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTF 364 Query: 280 DGVELDGRPLRLSLA 236 G G+PL +++A Sbjct: 365 HGQMFHGKPLYVAIA 379 Score = 39.7 bits (91), Expect = 0.005 Identities = 23/84 (27%), Positives = 41/84 (48%) Frame = -3 Query: 469 TXKVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAAL 290 T +Y G+ V L AF L R+ + +GRS +G+ +F + QDA A+ Sbjct: 23 TASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAI 82 Query: 289 QAMDGVELDGRPLRLSLAAQNPPA 218 + + L+G+ +R+ + + P A Sbjct: 83 EKKNNSLLNGKMIRVMWSVRAPDA 106 Score = 33.5 bits (75), Expect = 0.33 Identities = 21/65 (32%), Positives = 31/65 (47%) Frame = -3 Query: 472 GTXKVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAA 293 G V+ N V L+ F+ +V +V D G+SRG+GFV F A AA Sbjct: 110 GVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLED-GKSRGYGFVQFEQEDAAHAA 168 Query: 292 LQAMD 278 +Q ++ Sbjct: 169 IQTLN 173 Score = 30.0 bits (66), Expect = 3.7 Identities = 19/75 (25%), Positives = 36/75 (48%) Frame = -3 Query: 460 VYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 281 +Y N V D L+ F + G + + I + + RG+ FV+F +DA+ A + + Sbjct: 203 LYMKNLDADVSEDLLREKF-AEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETV 261 Query: 280 DGVELDGRPLRLSLA 236 +G + + L + A Sbjct: 262 NGTKFGSKCLYVGRA 276
>RBM28_HUMAN (Q9NW13) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 758 Score = 40.8 bits (94), Expect = 0.002 Identities = 29/91 (31%), Positives = 42/91 (46%) Frame = -3 Query: 448 NXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVE 269 N + D LK F Q G V I + G+ RGFGFV F + +A AL+ M+ E Sbjct: 119 NLSFKCSEDDLKTVF-AQFGAVLEVNIPRKPDGKMRGFGFVQFKNLLEAGKALKGMNMKE 177 Query: 268 LDGRPLRLSLAAQNPPAGSTPSTAQSQQEKN 176 + GR + + A T S + +EK+ Sbjct: 178 IKGRTVAVDWAVAKDKYKDTQSVSAIGEEKS 208 Score = 30.8 bits (68), Expect = 2.2 Identities = 16/64 (25%), Positives = 32/64 (50%) Frame = -3 Query: 460 VYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 281 ++ G R++ L+ F + V+ E+ + RGFG+V+F ++D + AL+ + Sbjct: 5 LFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI 64 Query: 280 DGVE 269 E Sbjct: 65 TTFE 68
>ROA1_MACMU (Q28521) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 319 Score = 40.8 bits (94), Expect = 0.002 Identities = 23/69 (33%), Positives = 39/69 (56%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 284 K++ G + ++L+ FE L V+ + +T RSRGFGFV++ T++ AA+ A Sbjct: 14 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKVDAAMNA 73 Query: 283 MDGVELDGR 257 ++DGR Sbjct: 74 RPH-KVDGR 81
>NAM8_YEAST (Q00539) Protein NAM8| Length = 523 Score = 40.8 bits (94), Expect = 0.002 Identities = 17/45 (37%), Positives = 30/45 (66%) Frame = -3 Query: 379 ARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRL 245 A+++ ++ TG S+G+GFV F + + AL M GV L+GR +++ Sbjct: 193 AKIVHDQVTGMSKGYGFVKFTNSDEQQLALSEMQGVFLNGRAIKV 237
>PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 653 Score = 40.8 bits (94), Expect = 0.002 Identities = 22/82 (26%), Positives = 39/82 (47%) Frame = -3 Query: 469 TXKVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAAL 290 + +Y G V L F + RV + T RS G+ +V+FH ++D + AL Sbjct: 79 SASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKAL 138 Query: 289 QAMDGVELDGRPLRLSLAAQNP 224 ++ + GRP R+ + ++P Sbjct: 139 DELNYTLIKGRPCRIMWSQRDP 160 Score = 39.7 bits (91), Expect = 0.005 Identities = 21/63 (33%), Positives = 38/63 (60%) Frame = -3 Query: 424 DALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRL 245 + LK F + A+++ + + G+S+GFGFV + T ++A A+ M+ L G+PL + Sbjct: 378 ERLKAEFSAFGTITSAKIMTD-EQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYV 436 Query: 244 SLA 236 +LA Sbjct: 437 ALA 439
>ROAA_HUMAN (Q99729) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (APOBEC-1-binding protein 1) (ABBP-1) Length = 331 Score = 40.4 bits (93), Expect = 0.003 Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 2/71 (2%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 284 K++ G W LK F +V + + +TGRSRGFGF+ F +DA + + Sbjct: 69 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILF---KDAASVEKV 125 Query: 283 MDGVE--LDGR 257 +D E LDGR Sbjct: 126 LDQKEHRLDGR 136
>THOC4_HUMAN (Q86V81) THO complex subunit 4 (Tho4) (Ally of AML-1 and LEF-1)| (Transcriptional coactivator Aly/REF) (bZIP-enhancing factor BEF) Length = 256 Score = 40.4 bits (93), Expect = 0.003 Identities = 31/89 (34%), Positives = 43/89 (48%), Gaps = 5/89 (5%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 284 K+ N +GV ++ F L A V ++R +GRS G V F DA A++ Sbjct: 106 KLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQ 164 Query: 283 MDGVELDGRPLRLSLA-----AQNPPAGS 212 +GV LDGRP+ + L AQ PA S Sbjct: 165 YNGVPLDGRPMNIQLVTSQIDAQRRPAQS 193
>PPIE_DROME (Q9V3G3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 300 Score = 40.4 bits (93), Expect = 0.003 Identities = 23/75 (30%), Positives = 38/75 (50%) Frame = -3 Query: 460 VYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 281 +Y G V L AF + ++ + ++ R RGF F+ + +DA AA+ M Sbjct: 8 IYVGGLADEVTERLLNNAFIPFGDIADIQMPADYESQRHRGFAFIEYEQSEDAAAAIDNM 67 Query: 280 DGVELDGRPLRLSLA 236 + EL GR +R++LA Sbjct: 68 NDSELCGRTIRVNLA 82
>RBM34_HUMAN (P42696) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 430 Score = 40.0 bits (92), Expect = 0.004 Identities = 22/72 (30%), Positives = 38/72 (52%) Frame = -3 Query: 460 VYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 281 V+ GN + V A++ F ++ R++ ++ TG +GFG+V F AL+ + Sbjct: 289 VFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLALK-L 347 Query: 280 DGVELDGRPLRL 245 + EL GR LR+ Sbjct: 348 NNSELMGRKLRV 359
>YG41_SCHPO (O60176) Hypothetical RNA-binding protein C23E6.01c in chromosome| II Length = 473 Score = 40.0 bits (92), Expect = 0.004 Identities = 21/54 (38%), Positives = 29/54 (53%) Frame = -3 Query: 379 ARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPA 218 A+++ + T SRG+GFV F D K+AL M G RP+R+ LA A Sbjct: 216 AKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLATPKSKA 269 Score = 32.7 bits (73), Expect = 0.57 Identities = 24/97 (24%), Positives = 39/97 (40%) Frame = -3 Query: 460 VYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 281 V+ G V + LK F+ +V ++ +G GFV F Q A+ A+ + Sbjct: 305 VFVGGLSKFVSEEELKYLFQNFGEIVYVKI------PPGKGCGFVQFVNRQSAEIAINQL 358 Query: 280 DGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKNSL 170 G L +RLS P + QSQ + ++ Sbjct: 359 QGYPLGNSRIRLSWGRNQNPIAAPALNYQSQVSQTTI 395
>SAFB1_RAT (O88453) Scaffold attachment factor B (Scaffold attachment factor| B1) (SAF-B) Length = 931 Score = 40.0 bits (92), Expect = 0.004 Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 2/88 (2%) Frame = -3 Query: 430 RADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPL 251 RA LK F +VGA+V+ + +R +GFV+ T ++A + + EL G+ + Sbjct: 440 RATDLKNLFSRYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCINHLHKTELHGKMI 499 Query: 250 RLSLAAQNPPAGSTPS--TAQSQQEKNS 173 + A P P S++EK S Sbjct: 500 SVEKAKSEPAGKRVPDRRDGDSKKEKTS 527
>ROA3_RAT (Q6URK4) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 39.7 bits (91), Expect = 0.005 Identities = 23/69 (33%), Positives = 38/69 (55%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 284 K++ G + D+L+ FE L V+ + T RSRGFGFV++ +++ AA+ A Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCA 95 Query: 283 MDGVELDGR 257 ++DGR Sbjct: 96 RPH-KVDGR 103
>ROA3_MOUSE (Q8BG05) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 39.7 bits (91), Expect = 0.005 Identities = 23/69 (33%), Positives = 38/69 (55%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 284 K++ G + D+L+ FE L V+ + T RSRGFGFV++ +++ AA+ A Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCA 95 Query: 283 MDGVELDGR 257 ++DGR Sbjct: 96 RPH-KVDGR 103
>RO31_XENLA (P51968) Heterogeneous nuclear ribonucleoprotein A3 homolog 1| (hnRNP A3(A)) Length = 373 Score = 39.7 bits (91), Expect = 0.005 Identities = 22/69 (31%), Positives = 38/69 (55%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 284 K++ G + D+L+ FE L V+ + T RSRGFGFV++ +++ A++ A Sbjct: 28 KLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDASMSA 87 Query: 283 MDGVELDGR 257 ++DGR Sbjct: 88 RPH-KVDGR 95
>PABP2_MOUSE (Q8CCS6) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PolyA binding protein II) (PABII) (Polyadenylate-binding nuclear protein 1) (Nuclear poly(A)-binding protein 1) Length = 301 Score = 39.7 bits (91), Expect = 0.005 Identities = 21/84 (25%), Positives = 41/84 (48%) Frame = -3 Query: 460 VYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 281 +Y GN +G A+ L+ F G + ++ ++ +G +GF ++ F + + +L A+ Sbjct: 169 IYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-AL 227 Query: 280 DGVELDGRPLRLSLAAQNPPAGST 209 D GR +++ N P ST Sbjct: 228 DESLFRGRQIKVIPKRTNRPGIST 251
>FOX1_CAEEL (Q10572) Sex determination protein fox-1 (Feminizing locus on X| protein 1) Length = 415 Score = 39.7 bits (91), Expect = 0.005 Identities = 29/101 (28%), Positives = 47/101 (46%) Frame = -3 Query: 472 GTXKVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAA 293 G +++ N + R LK FE + G+V I + G S+GFGFV+ QDA+ A Sbjct: 151 GPKRLHVSNIPFRFRDPDLKTMFE-KFGVVSDVEIIFNERG-SKGFGFVTMERPQDAERA 208 Query: 292 LQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKNSL 170 Q + G ++GR + ++ A + T + N L Sbjct: 209 RQELHGSMIEGRKIEVNCATARVHSKKVKPTGGILDQMNPL 249
>SGN1_YEAST (P40561) RNA-binding protein SGN1| Length = 250 Score = 39.7 bits (91), Expect = 0.005 Identities = 22/91 (24%), Positives = 48/91 (52%) Frame = -3 Query: 460 VYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 281 ++ GN V + ++ F+ + ++++R+TG +G+G++ F + + ALQ + Sbjct: 66 IFVGNITPDVTPEQIEDHFKDCGQIKRITLLYDRNTGTPKGYGYIEFESPAYREKALQ-L 124 Query: 280 DGVELDGRPLRLSLAAQNPPAGSTPSTAQSQ 188 +G EL G+ + +S N P + +Q+Q Sbjct: 125 NGGELKGKKIAVSRKRTNIPGFNRHYNSQNQ 155
>PABP2_HUMAN (Q86U42) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PolyA binding protein II) (PABII) (Polyadenylate-binding nuclear protein 1) (Nuclear poly(A)-binding protein 1) Length = 305 Score = 39.7 bits (91), Expect = 0.005 Identities = 21/84 (25%), Positives = 41/84 (48%) Frame = -3 Query: 460 VYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 281 +Y GN +G A+ L+ F G + ++ ++ +G +GF ++ F + + +L A+ Sbjct: 173 IYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-AL 231 Query: 280 DGVELDGRPLRLSLAAQNPPAGST 209 D GR +++ N P ST Sbjct: 232 DESLFRGRQIKVIPKRTNRPGIST 255
>PABP2_BOVIN (Q28165) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PolyA-binding protein II) (PABII) (Polyadenylate-binding nuclear protein 1) (Nuclear poly(A)-binding protein 1) Length = 305 Score = 39.7 bits (91), Expect = 0.005 Identities = 21/84 (25%), Positives = 41/84 (48%) Frame = -3 Query: 460 VYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 281 +Y GN +G A+ L+ F G + ++ ++ +G +GF ++ F + + +L A+ Sbjct: 173 IYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-AL 231 Query: 280 DGVELDGRPLRLSLAAQNPPAGST 209 D GR +++ N P ST Sbjct: 232 DESLFRGRQIKVIPKRTNRPGIST 255
>CUGB1_MOUSE (P28659) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (Deadenylation factor EDEN-BP) (Brain protein F41) Length = 486 Score = 39.7 bits (91), Expect = 0.005 Identities = 18/50 (36%), Positives = 33/50 (66%) Frame = -3 Query: 388 LVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSL 239 +V A+V ++ T S+ FGFVS+ A+AA+Q+M+G ++ + L++ L Sbjct: 427 VVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 476
>CUGB1_HUMAN (Q92879) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (50 kDa Nuclear polyadenylated RNA-binding protein) (EDEN-BP) Length = 486 Score = 39.7 bits (91), Expect = 0.005 Identities = 18/50 (36%), Positives = 33/50 (66%) Frame = -3 Query: 388 LVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSL 239 +V A+V ++ T S+ FGFVS+ A+AA+Q+M+G ++ + L++ L Sbjct: 427 VVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 476
>ROAA_MOUSE (Q99020) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (CArG-binding factor-A) (CBF-A) Length = 285 Score = 39.7 bits (91), Expect = 0.005 Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 2/71 (2%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 284 K++ G W LK F +V + + +TGRSRGFGF+ F +D+ + + Sbjct: 76 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILF---KDSSSVEKV 132 Query: 283 MDGVE--LDGR 257 +D E LDGR Sbjct: 133 LDQKEHRLDGR 143
>ROA3_HUMAN (P51991) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 378 Score = 39.7 bits (91), Expect = 0.005 Identities = 23/69 (33%), Positives = 38/69 (55%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 284 K++ G + D+L+ FE L V+ + T RSRGFGFV++ +++ AA+ A Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCA 95 Query: 283 MDGVELDGR 257 ++DGR Sbjct: 96 RPH-KVDGR 103
>RO32_XENLA (P51992) Heterogeneous nuclear ribonucleoprotein A3 homolog 2| (hnRNP A3(B)) Length = 385 Score = 39.7 bits (91), Expect = 0.005 Identities = 22/69 (31%), Positives = 38/69 (55%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 284 K++ G + D+L+ FE L V+ + T RSRGFGFV++ +++ A++ A Sbjct: 28 KLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDASMSA 87 Query: 283 MDGVELDGR 257 ++DGR Sbjct: 88 RPH-KVDGR 95 Score = 32.3 bits (72), Expect = 0.74 Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 2/86 (2%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSF--HTIQDAKAAL 290 K++ G L+ FEG + V+ +R +G+ RGF FV+F H D K + Sbjct: 119 KIFVGGIKEDTEEYHLRDYFEGYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVD-KIVV 177 Query: 289 QAMDGVELDGRPLRLSLAAQNPPAGS 212 Q + L ++ +L+ Q S Sbjct: 178 QKYHTINLHNCEVKKALSKQEMQTAS 203
>SAFB1_HUMAN (Q15424) Scaffold attachment factor B (Scaffold attachment factor| B1) (SAF-B) (HSP27 estrogen response element-TATA box-binding protein) (HSP27 ERE-TATA-binding protein) Length = 915 Score = 39.3 bits (90), Expect = 0.006 Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 3/89 (3%) Frame = -3 Query: 430 RADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPL 251 RA LK F +VGA+V+ + +R +GFV+ T ++A + + EL G+ + Sbjct: 418 RATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCINHLHKTELHGKMI 477 Query: 250 RLSLAAQNPPAGSTPS---TAQSQQEKNS 173 + A+N P G S + ++EK+S Sbjct: 478 SVE-KAKNEPVGKKTSDKRDSDGKKEKSS 505
>FUS_MOUSE (P56959) RNA-binding protein FUS (Pigpen protein)| Length = 518 Score = 39.3 bits (90), Expect = 0.006 Identities = 21/57 (36%), Positives = 32/57 (56%) Frame = -3 Query: 400 GQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQ 230 GQP + + +R+TG+ +G VSF AKAA+ DG E G P+++S A + Sbjct: 311 GQPMI---NLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFATR 364
>RAVR1_RAT (Q5XI28) Protein raver-1| Length = 748 Score = 39.3 bits (90), Expect = 0.006 Identities = 19/47 (40%), Positives = 27/47 (57%) Frame = -3 Query: 352 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGS 212 G+ +GF + + T + A+AA Q DG+ L G LR+S A PP S Sbjct: 259 GQLKGFAVLEYETAEMAEAAQQRADGLALGGSHLRVSFCAPGPPGRS 305
>FUS_BOVIN (Q28009) RNA-binding protein FUS (Pigpen protein)| Length = 512 Score = 39.3 bits (90), Expect = 0.006 Identities = 21/57 (36%), Positives = 32/57 (56%) Frame = -3 Query: 400 GQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQ 230 GQP + + +R+TG+ +G VSF AKAA+ DG E G P+++S A + Sbjct: 304 GQPMI---NLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFATR 357
>YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5| Length = 388 Score = 39.3 bits (90), Expect = 0.006 Identities = 19/60 (31%), Positives = 35/60 (58%) Frame = -3 Query: 376 RVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTA 197 +++ + D+G S+GF F++F + + + AL+AM+G L R + +S A + G TA Sbjct: 131 KIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFKRDSKGERHGTA 190 Score = 35.4 bits (80), Expect = 0.088 Identities = 15/44 (34%), Positives = 30/44 (68%) Frame = -3 Query: 364 ERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAA 233 +R T +GFGFV F +DA A++ ++ ++L G+P++++ A+ Sbjct: 47 DRVTANHQGFGFVEFMGEEDADYAIKILNMIKLYGKPIKVNKAS 90
>YNR5_YEAST (P53883) Hypothetical 45.7 kDa protein in RPS3-PSD1 intergenic| region Length = 403 Score = 39.3 bits (90), Expect = 0.006 Identities = 20/72 (27%), Positives = 37/72 (51%) Frame = -3 Query: 460 VYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 281 ++ GN + V D L+ F+ +V R+ D+G+ +GF F+ F + + L+ Sbjct: 241 LFVGNLSFDVTDDLLRKHFQHCGDIVKIRMATFEDSGKCKGFAFIDFKNEEGSTNELKDK 300 Query: 280 DGVELDGRPLRL 245 ++ GRPLR+ Sbjct: 301 SCRKIAGRPLRM 312
>SAFB2_HUMAN (Q14151) Scaffold attachment factor B2| Length = 953 Score = 39.3 bits (90), Expect = 0.006 Identities = 26/84 (30%), Positives = 41/84 (48%) Frame = -3 Query: 430 RADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPL 251 RA LK F +VGA+V+ + +R +GFV+ T +A + + EL GR + Sbjct: 419 RATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSDEATKCISHLHRTELHGRMI 478 Query: 250 RLSLAAQNPPAGSTPSTAQSQQEK 179 + A+N PAG S + + K Sbjct: 479 SVE-KAKNEPAGKKLSDRKECEVK 501
>FUS_HUMAN (P35637) RNA-binding protein FUS (Oncogene FUS) (Oncogene TLS)| (Translocated in liposarcoma protein) (POMp75) (75 kDa DNA-pairing protein) Length = 526 Score = 39.3 bits (90), Expect = 0.006 Identities = 21/57 (36%), Positives = 32/57 (56%) Frame = -3 Query: 400 GQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQ 230 GQP + + +R+TG+ +G VSF AKAA+ DG E G P+++S A + Sbjct: 318 GQPMI---NLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFATR 371
>RBM34_RAT (Q5M9F1) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 428 Score = 39.3 bits (90), Expect = 0.006 Identities = 31/102 (30%), Positives = 45/102 (44%), Gaps = 7/102 (6%) Frame = -3 Query: 460 VYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 281 V+ GN + V AL+ F +V R++ TG RGFG+V F AL+ + Sbjct: 287 VFVGNLPYRVDESALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLALK-L 345 Query: 280 DGVELDGRPLRL-------SLAAQNPPAGSTPSTAQSQQEKN 176 + EL GR LR+ L QN ++S+Q N Sbjct: 346 NNSELMGRKLRVMRSVNKEKLKQQNSNPSVKKDGSKSKQRLN 387
>REFP2_MOUSE (Q9JJW6) RNA and export factor-binding protein 2| Length = 218 Score = 38.9 bits (89), Expect = 0.008 Identities = 27/77 (35%), Positives = 38/77 (49%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 284 K+ N +GV ++ F L A V ++R +GRS G V F DA A++ Sbjct: 76 KLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQ 134 Query: 283 MDGVELDGRPLRLSLAA 233 GV LDGRP+ + L A Sbjct: 135 YKGVPLDGRPMDIQLVA 151
>RBM34_MOUSE (Q8C5L7) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 375 Score = 38.9 bits (89), Expect = 0.008 Identities = 24/72 (33%), Positives = 36/72 (50%) Frame = -3 Query: 460 VYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 281 V+ GN + + AL+ F +V R++ TG RGFG+V F AL+ + Sbjct: 293 VFVGNLPYKIEDSALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLALK-L 351 Query: 280 DGVELDGRPLRL 245 + EL GR LR+ Sbjct: 352 NNSELMGRKLRV 363
>ELAV3_MOUSE (Q60900) ELAV-like protein 3 (Hu-antigen C) (HuC)| Length = 367 Score = 38.9 bits (89), Expect = 0.008 Identities = 17/63 (26%), Positives = 36/63 (57%) Frame = -3 Query: 424 DALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRL 245 D K F + +++ ++ TG+S G+GFV++ DA A+ ++G++L + +++ Sbjct: 53 DEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKV 112 Query: 244 SLA 236 S A Sbjct: 113 SYA 115 Score = 34.3 bits (77), Expect = 0.20 Identities = 16/60 (26%), Positives = 35/60 (58%) Frame = -3 Query: 388 LVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGST 209 ++ +R++ ++ TG SRG GF+ F +A+ A++ ++G + G +++ N P+ T Sbjct: 151 IITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKT 210 Score = 32.3 bits (72), Expect = 0.74 Identities = 15/49 (30%), Positives = 28/49 (57%) Frame = -3 Query: 388 LVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLS 242 + +VI + T + +GFGFV+ +A A+ +++G L R L++S Sbjct: 310 VTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVS 358
>ELAV3_HUMAN (Q14576) ELAV-like protein 3 (Hu-antigen C) (HuC) (Paraneoplastic| cerebellar degeneration-associated antigen) (Paraneoplastic limbic encephalitis antigen 21) Length = 367 Score = 38.9 bits (89), Expect = 0.008 Identities = 17/63 (26%), Positives = 36/63 (57%) Frame = -3 Query: 424 DALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRL 245 D K F + +++ ++ TG+S G+GFV++ DA A+ ++G++L + +++ Sbjct: 53 DEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKV 112 Query: 244 SLA 236 S A Sbjct: 113 SYA 115 Score = 33.5 bits (75), Expect = 0.33 Identities = 16/60 (26%), Positives = 35/60 (58%) Frame = -3 Query: 388 LVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGST 209 ++ +R++ ++ TG SRG GF+ F +A+ A++ ++G + G +++ N P+ T Sbjct: 151 IITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKT 210 Score = 32.3 bits (72), Expect = 0.74 Identities = 15/49 (30%), Positives = 28/49 (57%) Frame = -3 Query: 388 LVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLS 242 + +VI + T + +GFGFV+ +A A+ +++G L R L++S Sbjct: 310 VTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVS 358
>THOC4_MOUSE (O08583) THO complex subunit 4 (Tho4) (RNA and export| factor-binding protein 1) (REF1-I) (Ally of AML-1 and LEF-1) (Aly/REF) Length = 254 Score = 38.9 bits (89), Expect = 0.008 Identities = 26/75 (34%), Positives = 38/75 (50%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 284 K+ N +GV ++ F L A V ++R +GRS G V F DA A++ Sbjct: 105 KLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQ 163 Query: 283 MDGVELDGRPLRLSL 239 +GV LDGRP+ + L Sbjct: 164 YNGVPLDGRPMNIQL 178
>SFRS7_HUMAN (Q16629) Splicing factor, arginine/serine-rich 7 (Splicing factor| 9G8) Length = 238 Score = 38.5 bits (88), Expect = 0.010 Identities = 26/83 (31%), Positives = 37/83 (44%) Frame = -3 Query: 472 GTXKVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAA 293 G KVY GN G G L+ AF L + GF FV F +DA+ A Sbjct: 9 GETKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-----ARNPPGFAFVEFEDPRDAEDA 63 Query: 292 LQAMDGVELDGRPLRLSLAAQNP 224 ++ +DG + G +R+ L+ P Sbjct: 64 VRGLDGKVICGSRVRVELSTGMP 86
>PABP_YEAST (P04147) Polyadenylate-binding protein, cytoplasmic and nuclear| (Poly(A)-binding protein) (PABP) (ARS consensus-binding protein ACBP-67) (Polyadenylate tail-binding protein) Length = 576 Score = 38.5 bits (88), Expect = 0.010 Identities = 21/76 (27%), Positives = 40/76 (52%) Frame = -3 Query: 391 GLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGS 212 G + + + + G+S+GFGFV F T ++A A+ + + G+PL +++A + S Sbjct: 345 GTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRS 404 Query: 211 TPSTAQSQQEKNSLTW 164 AQ Q +N + + Sbjct: 405 --QLAQQIQARNQMRY 418 Score = 36.2 bits (82), Expect = 0.051 Identities = 20/74 (27%), Positives = 40/74 (54%) Frame = -3 Query: 472 GTXKVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAA 293 G+ ++ N + AL F ++ +++ + + G+S+GFGFV F AK A Sbjct: 123 GSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATD-ENGKSKGFGFVHFEEEGAAKEA 181 Query: 292 LQAMDGVELDGRPL 251 + A++G+ L+G+ + Sbjct: 182 IDALNGMLLNGQEI 195 Score = 34.3 bits (77), Expect = 0.20 Identities = 17/44 (38%), Positives = 29/44 (65%), Gaps = 1/44 (2%) Frame = -3 Query: 364 ERDT-GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 236 E+D G+ +GFGFV++ +DA A++A++ EL+G L + A Sbjct: 250 EKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRA 293
>RB27C_DROME (P48809) Heterogeneous nuclear ribonucleoprotein 27C (Hrb27-C)| (hnRNP 48) (HRP48.1) Length = 421 Score = 38.5 bits (88), Expect = 0.010 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 4/74 (5%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQ- 287 K++ G W + L F ++ V+ ++GRSRGFGFV+F + LQ Sbjct: 8 KLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQN 67 Query: 286 ---AMDGVELDGRP 254 +DG +D +P Sbjct: 68 GPHTLDGRTIDPKP 81 Score = 30.4 bits (67), Expect = 2.8 Identities = 15/51 (29%), Positives = 26/51 (50%) Frame = -3 Query: 472 GTXKVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSF 320 G KV+ G V L+ F + ++++++ +SRGFGF+SF Sbjct: 94 GGYKVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSF 144
>PABP5_MACMU (Q7JGR2) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 38.5 bits (88), Expect = 0.010 Identities = 21/74 (28%), Positives = 38/74 (51%) Frame = -3 Query: 460 VYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 281 +Y N + + LK F + A+V+ E G+ +GFG V F + ++A A+ M Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEM 361 Query: 280 DGVELDGRPLRLSL 239 +G + +PL ++L Sbjct: 362 NGRVVGSKPLHVTL 375 Score = 36.2 bits (82), Expect = 0.051 Identities = 23/75 (30%), Positives = 39/75 (52%) Frame = -3 Query: 460 VYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 281 V+ N G + + LK F +VI + +G+S+GFGFV + T + A+ A+ + Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDL 259 Query: 280 DGVELDGRPLRLSLA 236 G +DG+ L + A Sbjct: 260 HGKSIDGKVLYVGRA 274 Score = 33.5 bits (75), Expect = 0.33 Identities = 22/72 (30%), Positives = 34/72 (47%) Frame = -3 Query: 460 VYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 281 +Y G+ V D L F L R+ + T G+G+V+F DA+ AL M Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79 Query: 280 DGVELDGRPLRL 245 + ++G+P RL Sbjct: 80 NFDLINGKPFRL 91 Score = 30.4 bits (67), Expect = 2.8 Identities = 19/72 (26%), Positives = 35/72 (48%) Frame = -3 Query: 472 GTXKVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAA 293 G ++ N + AL F ++ +V+ + D G S+G+ +V F ++ A A Sbjct: 104 GVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD-DNG-SKGYAYVHFDSLAAANRA 161 Query: 292 LQAMDGVELDGR 257 + M+GV L+ R Sbjct: 162 IWHMNGVRLNNR 173
>ELAV2_RAT (Q8CH84) ELAV-like protein 2 (Hu-antigen B) (HuB)| Length = 359 Score = 38.5 bits (88), Expect = 0.010 Identities = 17/63 (26%), Positives = 38/63 (60%) Frame = -3 Query: 424 DALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRL 245 + LK F + +++ ++ TG+S G+GFV++ +DA+ A+ ++G+ L + +++ Sbjct: 53 EELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKV 112 Query: 244 SLA 236 S A Sbjct: 113 SYA 115 Score = 37.0 bits (84), Expect = 0.030 Identities = 20/77 (25%), Positives = 40/77 (51%) Frame = -3 Query: 418 LKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSL 239 L+ F ++ +R++ ++ TG SRG GF+ F +A+ A++ ++G + G +++ Sbjct: 141 LEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITV 200 Query: 238 AAQNPPAGSTPSTAQSQ 188 N P+ T SQ Sbjct: 201 KFANNPSQKTNQAILSQ 217 Score = 33.5 bits (75), Expect = 0.33 Identities = 15/49 (30%), Positives = 29/49 (59%) Frame = -3 Query: 388 LVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLS 242 + +VI + +T + +GFGFV+ +A A+ +++G L R L++S Sbjct: 302 VTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVS 350
>ELAV2_PONPY (Q5R9Z6) ELAV-like protein 2| Length = 359 Score = 38.5 bits (88), Expect = 0.010 Identities = 17/63 (26%), Positives = 38/63 (60%) Frame = -3 Query: 424 DALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRL 245 + LK F + +++ ++ TG+S G+GFV++ +DA+ A+ ++G+ L + +++ Sbjct: 53 EELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKV 112 Query: 244 SLA 236 S A Sbjct: 113 SYA 115 Score = 37.0 bits (84), Expect = 0.030 Identities = 20/77 (25%), Positives = 40/77 (51%) Frame = -3 Query: 418 LKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSL 239 L+ F ++ +R++ ++ TG SRG GF+ F +A+ A++ ++G + G +++ Sbjct: 141 LEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITV 200 Query: 238 AAQNPPAGSTPSTAQSQ 188 N P+ T SQ Sbjct: 201 KFANNPSQKTNQAILSQ 217 Score = 33.5 bits (75), Expect = 0.33 Identities = 15/49 (30%), Positives = 29/49 (59%) Frame = -3 Query: 388 LVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLS 242 + +VI + +T + +GFGFV+ +A A+ +++G L R L++S Sbjct: 302 VTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVS 350
>ELAV2_HUMAN (Q12926) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Hel-N1) Length = 359 Score = 38.5 bits (88), Expect = 0.010 Identities = 17/63 (26%), Positives = 38/63 (60%) Frame = -3 Query: 424 DALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRL 245 + LK F + +++ ++ TG+S G+GFV++ +DA+ A+ ++G+ L + +++ Sbjct: 53 EELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKV 112 Query: 244 SLA 236 S A Sbjct: 113 SYA 115 Score = 37.0 bits (84), Expect = 0.030 Identities = 20/77 (25%), Positives = 40/77 (51%) Frame = -3 Query: 418 LKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSL 239 L+ F ++ +R++ ++ TG SRG GF+ F +A+ A++ ++G + G +++ Sbjct: 141 LEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITV 200 Query: 238 AAQNPPAGSTPSTAQSQ 188 N P+ T SQ Sbjct: 201 KFANNPSQKTNQAILSQ 217 Score = 33.5 bits (75), Expect = 0.33 Identities = 15/49 (30%), Positives = 29/49 (59%) Frame = -3 Query: 388 LVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLS 242 + +VI + +T + +GFGFV+ +A A+ +++G L R L++S Sbjct: 302 VTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVS 350
>ELAV2_MOUSE (Q60899) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Mel-N1) Length = 360 Score = 38.5 bits (88), Expect = 0.010 Identities = 17/63 (26%), Positives = 38/63 (60%) Frame = -3 Query: 424 DALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRL 245 + LK F + +++ ++ TG+S G+GFV++ +DA+ A+ ++G+ L + +++ Sbjct: 53 EELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKV 112 Query: 244 SLA 236 S A Sbjct: 113 SYA 115 Score = 37.0 bits (84), Expect = 0.030 Identities = 20/77 (25%), Positives = 40/77 (51%) Frame = -3 Query: 418 LKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSL 239 L+ F ++ +R++ ++ TG SRG GF+ F +A+ A++ ++G + G +++ Sbjct: 141 LEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITV 200 Query: 238 AAQNPPAGSTPSTAQSQ 188 N P+ T SQ Sbjct: 201 KFANNPSQKTNQAILSQ 217 Score = 33.5 bits (75), Expect = 0.33 Identities = 15/49 (30%), Positives = 29/49 (59%) Frame = -3 Query: 388 LVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLS 242 + +VI + +T + +GFGFV+ +A A+ +++G L R L++S Sbjct: 303 VTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVS 351
>RBP56_HUMAN (Q92804) TATA-binding protein-associated factor 2N (RNA-binding| protein 56) (TAFII68) (TAF(II)68) Length = 592 Score = 38.1 bits (87), Expect = 0.014 Identities = 18/47 (38%), Positives = 27/47 (57%) Frame = -3 Query: 364 ERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNP 224 ++DTG+ +G VSF AKAA+ DG E G +++S A + P Sbjct: 276 DKDTGKPKGEATVSFDDPPSAKAAIDWFDGKEFHGNIIKVSFATRRP 322
>NOP4_YEAST (P37838) Nucleolar protein NOP4 (Nucleolar protein NOP77)| Length = 685 Score = 38.1 bits (87), Expect = 0.014 Identities = 21/67 (31%), Positives = 32/67 (47%) Frame = -3 Query: 373 VIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQ 194 V+ + RSRGFGFVSF D K AL + +G LR+ +A + + T + Sbjct: 56 VVVKDTNKRSRGFGFVSFAVEDDTKEALAKARKTKFNGHILRVDIAKRRDRSKKTSEVVE 115 Query: 193 SQQEKNS 173 ++S Sbjct: 116 KSTPESS 122 Score = 36.6 bits (83), Expect = 0.039 Identities = 22/81 (27%), Positives = 35/81 (43%) Frame = -3 Query: 472 GTXKVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAA 293 G K+ N W R G+ G V I + G+ GF FV+ I + + A Sbjct: 145 GKPKLIIRNMPWSCRDPVKLKKIFGRYGTVVEATIPRKRDGKLCGFAFVTMKKISNCRIA 204 Query: 292 LQAMDGVELDGRPLRLSLAAQ 230 L+ +++DGR + + A Q Sbjct: 205 LENTKDLKIDGRKVAVDFAVQ 225
>MRD1_EMENI (Q5BGA9) Multiple RNA-binding domain-containing protein 1| Length = 819 Score = 38.1 bits (87), Expect = 0.014 Identities = 26/78 (33%), Positives = 34/78 (43%), Gaps = 5/78 (6%) Frame = -3 Query: 469 TXKVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGR-----SRGFGFVSFHTIQD 305 T ++ N + +L AF G V AR+ + D S GFGF F T Sbjct: 591 TATLFIKNLNFSTTNQSLIEAFRPLDGFVSARIKTKPDPKNPGQTLSMGFGFADFKTKAQ 650 Query: 304 AKAALQAMDGVELDGRPL 251 A+AAL M+G LD L Sbjct: 651 AQAALAVMNGYTLDRHTL 668 Score = 30.8 bits (68), Expect = 2.2 Identities = 15/37 (40%), Positives = 22/37 (59%) Frame = -3 Query: 346 SRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 236 +RGFGF F + ++A+ A+ A+ L GR L L A Sbjct: 736 ARGFGFADFVSAREAENAMDALKNTHLLGRRLVLEFA 772
>PABP5_PONPY (P60050) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 38.1 bits (87), Expect = 0.014 Identities = 21/74 (28%), Positives = 38/74 (51%) Frame = -3 Query: 460 VYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 281 +Y N + + LK F + A+V+ E G+ +GFG V F + ++A A+ M Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEM 361 Query: 280 DGVELDGRPLRLSL 239 +G + +PL ++L Sbjct: 362 NGRIVGSKPLHVTL 375 Score = 36.2 bits (82), Expect = 0.051 Identities = 23/75 (30%), Positives = 39/75 (52%) Frame = -3 Query: 460 VYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 281 V+ N G + + LK F +VI + +G+S+GFGFV + T + A+ A+ + Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDL 259 Query: 280 DGVELDGRPLRLSLA 236 G +DG+ L + A Sbjct: 260 HGKSIDGKVLYVGRA 274 Score = 33.5 bits (75), Expect = 0.33 Identities = 22/72 (30%), Positives = 34/72 (47%) Frame = -3 Query: 460 VYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 281 +Y G+ V D L F L R+ + T G+G+V+F DA+ AL M Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79 Query: 280 DGVELDGRPLRL 245 + ++G+P RL Sbjct: 80 NFDLINGKPFRL 91 Score = 30.4 bits (67), Expect = 2.8 Identities = 19/72 (26%), Positives = 35/72 (48%) Frame = -3 Query: 472 GTXKVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAA 293 G ++ N + AL F ++ +V+ + D G S+G+ +V F ++ A A Sbjct: 104 GVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD-DNG-SKGYAYVHFDSLAAANRA 161 Query: 292 LQAMDGVELDGR 257 + M+GV L+ R Sbjct: 162 IWHMNGVRLNNR 173
>PABP5_PANTR (P60049) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 38.1 bits (87), Expect = 0.014 Identities = 21/74 (28%), Positives = 38/74 (51%) Frame = -3 Query: 460 VYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 281 +Y N + + LK F + A+V+ E G+ +GFG V F + ++A A+ M Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEM 361 Query: 280 DGVELDGRPLRLSL 239 +G + +PL ++L Sbjct: 362 NGRIVGSKPLHVTL 375 Score = 36.2 bits (82), Expect = 0.051 Identities = 23/75 (30%), Positives = 39/75 (52%) Frame = -3 Query: 460 VYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 281 V+ N G + + LK F +VI + +G+S+GFGFV + T + A+ A+ + Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDL 259 Query: 280 DGVELDGRPLRLSLA 236 G +DG+ L + A Sbjct: 260 HGKSIDGKVLYVGRA 274 Score = 33.5 bits (75), Expect = 0.33 Identities = 22/72 (30%), Positives = 34/72 (47%) Frame = -3 Query: 460 VYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 281 +Y G+ V D L F L R+ + T G+G+V+F DA+ AL M Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79 Query: 280 DGVELDGRPLRL 245 + ++G+P RL Sbjct: 80 NFDLINGKPFRL 91 Score = 30.4 bits (67), Expect = 2.8 Identities = 19/72 (26%), Positives = 35/72 (48%) Frame = -3 Query: 472 GTXKVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAA 293 G ++ N + AL F ++ +V+ + D G S+G+ +V F ++ A A Sbjct: 104 GVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD-DNG-SKGYAYVHFDSLAAANRA 161 Query: 292 LQAMDGVELDGR 257 + M+GV L+ R Sbjct: 162 IWHMNGVRLNNR 173
>PABP5_HYLLA (P60048) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 38.1 bits (87), Expect = 0.014 Identities = 21/74 (28%), Positives = 38/74 (51%) Frame = -3 Query: 460 VYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 281 +Y N + + LK F + A+V+ E G+ +GFG V F + ++A A+ M Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEM 361 Query: 280 DGVELDGRPLRLSL 239 +G + +PL ++L Sbjct: 362 NGRIVGSKPLHVTL 375 Score = 36.2 bits (82), Expect = 0.051 Identities = 23/75 (30%), Positives = 39/75 (52%) Frame = -3 Query: 460 VYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 281 V+ N G + + LK F +VI + +G+S+GFGFV + T + A+ A+ + Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDL 259 Query: 280 DGVELDGRPLRLSLA 236 G +DG+ L + A Sbjct: 260 HGKSIDGKVLYVGRA 274 Score = 33.5 bits (75), Expect = 0.33 Identities = 22/72 (30%), Positives = 34/72 (47%) Frame = -3 Query: 460 VYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 281 +Y G+ V D L F L R+ + T G+G+V+F DA+ AL M Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79 Query: 280 DGVELDGRPLRL 245 + ++G+P RL Sbjct: 80 NFDLINGKPFRL 91 Score = 30.4 bits (67), Expect = 2.8 Identities = 19/72 (26%), Positives = 35/72 (48%) Frame = -3 Query: 472 GTXKVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAA 293 G ++ N + AL F ++ +V+ + D G S+G+ +V F ++ A A Sbjct: 104 GVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD-DNG-SKGYAYVHFDSLAAANRA 161 Query: 292 LQAMDGVELDGR 257 + M+GV L+ R Sbjct: 162 IWHMNGVRLNNR 173
>PABP5_HUMAN (Q96DU9) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 38.1 bits (87), Expect = 0.014 Identities = 21/74 (28%), Positives = 38/74 (51%) Frame = -3 Query: 460 VYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 281 +Y N + + LK F + A+V+ E G+ +GFG V F + ++A A+ M Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEM 361 Query: 280 DGVELDGRPLRLSL 239 +G + +PL ++L Sbjct: 362 NGRIVGSKPLHVTL 375 Score = 36.2 bits (82), Expect = 0.051 Identities = 23/75 (30%), Positives = 39/75 (52%) Frame = -3 Query: 460 VYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 281 V+ N G + + LK F +VI + +G+S+GFGFV + T + A+ A+ + Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDL 259 Query: 280 DGVELDGRPLRLSLA 236 G +DG+ L + A Sbjct: 260 HGKSIDGKVLYVGRA 274 Score = 33.5 bits (75), Expect = 0.33 Identities = 22/72 (30%), Positives = 34/72 (47%) Frame = -3 Query: 460 VYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 281 +Y G+ V D L F L R+ + T G+G+V+F DA+ AL M Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79 Query: 280 DGVELDGRPLRL 245 + ++G+P RL Sbjct: 80 NFDLINGKPFRL 91 Score = 30.4 bits (67), Expect = 2.8 Identities = 19/72 (26%), Positives = 35/72 (48%) Frame = -3 Query: 472 GTXKVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAA 293 G ++ N + AL F ++ +V+ + D G S+G+ +V F ++ A A Sbjct: 104 GVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD-DNG-SKGYAYVHFDSLAAANRA 161 Query: 292 LQAMDGVELDGR 257 + M+GV L+ R Sbjct: 162 IWHMNGVRLNNR 173
>PABP5_GORGO (P60047) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 38.1 bits (87), Expect = 0.014 Identities = 21/74 (28%), Positives = 38/74 (51%) Frame = -3 Query: 460 VYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 281 +Y N + + LK F + A+V+ E G+ +GFG V F + ++A A+ M Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEM 361 Query: 280 DGVELDGRPLRLSL 239 +G + +PL ++L Sbjct: 362 NGRIVGSKPLHVTL 375 Score = 36.2 bits (82), Expect = 0.051 Identities = 23/75 (30%), Positives = 39/75 (52%) Frame = -3 Query: 460 VYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 281 V+ N G + + LK F +VI + +G+S+GFGFV + T + A+ A+ + Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDL 259 Query: 280 DGVELDGRPLRLSLA 236 G +DG+ L + A Sbjct: 260 HGKSIDGKVLYVGRA 274 Score = 33.5 bits (75), Expect = 0.33 Identities = 22/72 (30%), Positives = 34/72 (47%) Frame = -3 Query: 460 VYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 281 +Y G+ V D L F L R+ + T G+G+V+F DA+ AL M Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79 Query: 280 DGVELDGRPLRL 245 + ++G+P RL Sbjct: 80 NFDLINGKPFRL 91 Score = 30.4 bits (67), Expect = 2.8 Identities = 19/72 (26%), Positives = 35/72 (48%) Frame = -3 Query: 472 GTXKVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAA 293 G ++ N + AL F ++ +V+ + D G S+G+ +V F ++ A A Sbjct: 104 GVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD-DNG-SKGYAYVHFDSLAAANRA 161 Query: 292 LQAMDGVELDGR 257 + M+GV L+ R Sbjct: 162 IWHMNGVRLNNR 173
>DAZP1_XENLA (Q98SJ2) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) (Proline-rich Vg1 mRNA-binding protein) Length = 360 Score = 37.7 bits (86), Expect = 0.018 Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 4/74 (5%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAAL-- 290 K++ G W + L+ F +V ++ ++ T +SRGFGFV F L Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70 Query: 289 --QAMDGVELDGRP 254 +DG +D +P Sbjct: 71 RPHTLDGRNIDPKP 84 Score = 31.2 bits (69), Expect = 1.7 Identities = 22/93 (23%), Positives = 37/93 (39%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 284 K++ G LK F + +I++ + R RGFGF++F Q A+ Sbjct: 115 KIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN- 173 Query: 283 MDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQ 185 M ++ G+ + + A TP S Q Sbjct: 174 MHFHDIMGKKVEVKRAEPRDSKSQTPGPPGSNQ 206
>DAZP1_MOUSE (Q9JII5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 406 Score = 37.7 bits (86), Expect = 0.018 Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 4/74 (5%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAAL-- 290 K++ G W + L+ F +V ++ ++ T +SRGFGFV F L Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70 Query: 289 --QAMDGVELDGRP 254 +DG +D +P Sbjct: 71 RPHTLDGRNIDPKP 84
>HNRPM_MOUSE (Q9D0E1) Heterogeneous nuclear ribonucleoprotein M (hnRNP M)| Length = 728 Score = 37.7 bits (86), Expect = 0.018 Identities = 27/97 (27%), Positives = 45/97 (46%) Frame = -3 Query: 460 VYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 281 V+ N + V LK F +V A ++ ++D G+SRG G V+F +A A+ Sbjct: 204 VFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKD-GKSRGIGIVTFEQSIEAVQAISMF 262 Query: 280 DGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKNSL 170 +G L RP+ + + + P G + QQ + L Sbjct: 263 NGQLLFDRPMHVKMDERALPKGDFFPPERPQQLPHGL 299 Score = 31.2 bits (69), Expect = 1.7 Identities = 13/36 (36%), Positives = 24/36 (66%) Frame = -3 Query: 358 DTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPL 251 + G+S+G G V F + + A+ A + M+G++L GR + Sbjct: 685 ENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREI 720 Score = 30.8 bits (68), Expect = 2.2 Identities = 19/73 (26%), Positives = 34/73 (46%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 284 + + N + V+ +LK + + G V + G+SRG V F + K A + Sbjct: 70 RAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEV 129 Query: 283 MDGVELDGRPLRL 245 ++ L GRPL++ Sbjct: 130 LNKHSLSGRPLKV 142
>SAFB2_MOUSE (Q80YR5) Scaffold attachment factor B2| Length = 991 Score = 37.7 bits (86), Expect = 0.018 Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 1/85 (1%) Frame = -3 Query: 430 RADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPL 251 RA LK F ++GA+V+ + +R +GFV+ T +A + + EL GR + Sbjct: 463 RAADLKSLFSKHGKVIGAKVVTNARSPGARCYGFVTMSTSDEATKCISHLHRTELHGRMI 522 Query: 250 RLSLAAQNP-PAGSTPSTAQSQQEK 179 + A P S+ A Q+EK Sbjct: 523 SVEKAKNEPSEKKSSDRRACDQKEK 547
>RAVR1_HUMAN (Q8IY67) Protein raver-1| Length = 606 Score = 37.7 bits (86), Expect = 0.018 Identities = 18/47 (38%), Positives = 26/47 (55%) Frame = -3 Query: 352 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGS 212 G+ +GF + + T + A+ A Q DG+ L G LR+S A PP S Sbjct: 259 GQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPPGRS 305
>DAZP1_HUMAN (Q96EP5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 407 Score = 37.7 bits (86), Expect = 0.018 Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 4/74 (5%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAAL-- 290 K++ G W + L+ F +V ++ ++ T +SRGFGFV F L Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70 Query: 289 --QAMDGVELDGRP 254 +DG +D +P Sbjct: 71 RPHTLDGRNIDPKP 84
>PPIE_SCHMA (Q26548) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) Length = 273 Score = 37.4 bits (85), Expect = 0.023 Identities = 16/40 (40%), Positives = 27/40 (67%) Frame = -3 Query: 355 TGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 236 T + RGF FV F ++DA +A+ M+ E+ GR +R+++A Sbjct: 7 TEKHRGFAFVEFEEVEDAMSAIDNMNESEIFGRTIRVNVA 46
>RSD1_SCHPO (O13845) RNA-binding protein rsd1| Length = 604 Score = 37.4 bits (85), Expect = 0.023 Identities = 16/40 (40%), Positives = 26/40 (65%) Frame = -3 Query: 358 DTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSL 239 D RS+GFG++ + A+ AL+ M+G +L GR +R+ L Sbjct: 375 DQNRSKGFGYIQYRNPISARNALEKMNGFDLAGRNMRVCL 414
>HNRPM_HUMAN (P52272) Heterogeneous nuclear ribonucleoprotein M (hnRNP M)| Length = 729 Score = 37.0 bits (84), Expect = 0.030 Identities = 27/97 (27%), Positives = 45/97 (46%) Frame = -3 Query: 460 VYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 281 V+ N + V LK F +V A ++ ++D G+SRG G V+F +A A+ Sbjct: 205 VFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKD-GKSRGIGTVTFEQSIEAVQAISMF 263 Query: 280 DGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKNSL 170 +G L RP+ + + + P G + QQ + L Sbjct: 264 NGQLLFDRPMHVKMDERALPKGDFFPPERPQQLPHGL 300 Score = 31.2 bits (69), Expect = 1.7 Identities = 13/36 (36%), Positives = 24/36 (66%) Frame = -3 Query: 358 DTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPL 251 + G+S+G G V F + + A+ A + M+G++L GR + Sbjct: 686 ENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREI 721 Score = 30.8 bits (68), Expect = 2.2 Identities = 19/73 (26%), Positives = 34/73 (46%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 284 + + N + V+ +LK + + G V + G+SRG V F + K A + Sbjct: 71 RAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEV 130 Query: 283 MDGVELDGRPLRL 245 ++ L GRPL++ Sbjct: 131 LNKHSLSGRPLKV 143
>HNRPM_RAT (Q62826) Heterogeneous nuclear ribonucleoprotein M (hnRNP M) (M4| protein) Length = 689 Score = 37.0 bits (84), Expect = 0.030 Identities = 27/97 (27%), Positives = 45/97 (46%) Frame = -3 Query: 460 VYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 281 V+ N + V LK F +V A ++ ++D G+SRG G V+F +A A+ Sbjct: 165 VFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKD-GKSRGIGTVTFEQSIEAVQAISMF 223 Query: 280 DGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKNSL 170 +G L RP+ + + + P G + QQ + L Sbjct: 224 NGQLLFDRPMHVKMDERALPKGDFFPPERPQQLPHGL 260 Score = 31.2 bits (69), Expect = 1.7 Identities = 13/36 (36%), Positives = 24/36 (66%) Frame = -3 Query: 358 DTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPL 251 + G+S+G G V F + + A+ A + M+G++L GR + Sbjct: 646 ENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREI 681 Score = 30.8 bits (68), Expect = 2.2 Identities = 19/73 (26%), Positives = 34/73 (46%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 284 + + N + V+ +LK + + G V + G+SRG V F + K A + Sbjct: 70 RAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEV 129 Query: 283 MDGVELDGRPLRL 245 ++ L GRPL++ Sbjct: 130 LNKHSLSGRPLKV 142
>ROA1_SCHAM (P21522) Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog| Length = 342 Score = 37.0 bits (84), Expect = 0.030 Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 4/89 (4%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSF---HTIQDAK-A 296 K++ G + ++LK FE +V V+ + T RSRGFGF+++ H + DA+ A Sbjct: 18 KLFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFITYSRAHMVDDAQNA 77 Query: 295 ALQAMDGVELDGRPLRLSLAAQNPPAGST 209 +DG ++ + P AG+T Sbjct: 78 RPHKVDGRVVEPKRAVPRTEIGRPEAGAT 106
>RBM28_MOUSE (Q8CGC6) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 749 Score = 37.0 bits (84), Expect = 0.030 Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 6/87 (6%) Frame = -3 Query: 460 VYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 281 V+ N + +AL + L RV+ DT S+G F F T + A+ L A Sbjct: 326 VFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAA 385 Query: 280 D------GVELDGRPLRLSLAAQNPPA 218 G++LDGR L++ LA A Sbjct: 386 SPEAEGGGLKLDGRQLKVDLAVTRDEA 412 Score = 32.7 bits (73), Expect = 0.57 Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 3/69 (4%) Frame = -3 Query: 460 VYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQ-- 287 ++ G R+D L+ F + V+ E+ + RGFG+V+F ++D + AL+ Sbjct: 5 LFVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI 64 Query: 286 -AMDGVELD 263 +G ++D Sbjct: 65 TTFEGCKID 73
>SFRS7_MOUSE (Q8BL97) Splicing factor, arginine/serine-rich 7| Length = 267 Score = 36.6 bits (83), Expect = 0.039 Identities = 25/80 (31%), Positives = 36/80 (45%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 284 KVY GN G G L+ AF L + GF FV F +DA+ A++ Sbjct: 41 KVYVGNLGTGAGKGELERAFSYYGPLRTVWI-----ARNPPGFAFVEFEDPRDAEDAVRG 95 Query: 283 MDGVELDGRPLRLSLAAQNP 224 +DG + G +R+ L+ P Sbjct: 96 LDGKVICGSRVRVELSTGMP 115
>ROA2_MOUSE (O88569) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 341 Score = 36.6 bits (83), Expect = 0.039 Identities = 23/83 (27%), Positives = 41/83 (49%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 284 K++ G + ++L+ +E L V+ + + RSRGFGFV+F ++ + AA+ A Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 69 Query: 283 MDGVELDGRPLRLSLAAQNPPAG 215 +DGR + A +G Sbjct: 70 RPH-SIDGRVVEPKRAVAREESG 91 Score = 31.2 bits (69), Expect = 1.7 Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 2/80 (2%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSF--HTIQDAKAAL 290 K++ G L+ FE + +I +R +G+ RGFGFV+F H D K L Sbjct: 101 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVD-KIVL 159 Query: 289 QAMDGVELDGRPLRLSLAAQ 230 Q + +R +L+ Q Sbjct: 160 QKYHTINGHNAEVRKALSRQ 179
>LARK_DROME (Q94901) RNA-binding protein lark| Length = 352 Score = 36.6 bits (83), Expect = 0.039 Identities = 19/78 (24%), Positives = 40/78 (51%) Frame = -3 Query: 469 TXKVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAAL 290 T K++ GN RA ++ F+ +V ++ R +GFV + D + A+ Sbjct: 85 TTKIFVGNLTDKTRAPEVRELFQKYGTVVECDIV--------RNYGFVHLDCVGDVQDAI 136 Query: 289 QAMDGVELDGRPLRLSLA 236 + ++G +DG+PL++ ++ Sbjct: 137 KELNGRVVDGQPLKVQVS 154
>ROA2_HUMAN (P22626) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 353 Score = 36.6 bits (83), Expect = 0.039 Identities = 23/83 (27%), Positives = 41/83 (49%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 284 K++ G + ++L+ +E L V+ + + RSRGFGFV+F ++ + AA+ A Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81 Query: 283 MDGVELDGRPLRLSLAAQNPPAG 215 +DGR + A +G Sbjct: 82 RPH-SIDGRVVEPKRAVAREESG 103 Score = 31.2 bits (69), Expect = 1.7 Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 2/80 (2%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSF--HTIQDAKAAL 290 K++ G L+ FE + +I +R +G+ RGFGFV+F H D K L Sbjct: 113 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVD-KIVL 171 Query: 289 QAMDGVELDGRPLRLSLAAQ 230 Q + +R +L+ Q Sbjct: 172 QKYHTINGHNAEVRKALSRQ 191
>CTF1_SCHPO (O43040) Cleavage and termination factor 1 (Transcription| termination factor ctf1) Length = 363 Score = 36.6 bits (83), Expect = 0.039 Identities = 17/79 (21%), Positives = 37/79 (46%) Frame = -3 Query: 460 VYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 281 V+ GN + V + F + +++ + +TG +G+GF F + A++ + Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKL 68 Query: 280 DGVELDGRPLRLSLAAQNP 224 + EL R +R+ + +P Sbjct: 69 NNSELGPRKIRVEFPSNDP 87
>YG5B_YEAST (P53316) Hypothetical 89.5 kDa protein in MGA1-GCN4 intergenic| region Length = 781 Score = 36.2 bits (82), Expect = 0.051 Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Frame = -3 Query: 352 GRSRGFGFVSFHTIQDAKAALQAMDGVELD-GRPLRLSLAAQNPPAGSTPSTAQSQQEKN 176 G SRG+GFVSF + DA A+ DG ++ + L +S A + S+ QSQ + + Sbjct: 597 GSSRGYGFVSFESPLDAAKAILNTDGYQVSKDQVLSVSFAQKRGNLSSSDDDDQSQTDNS 656 Query: 175 S 173 S Sbjct: 657 S 657 Score = 31.2 bits (69), Expect = 1.7 Identities = 13/70 (18%), Positives = 32/70 (45%) Frame = -3 Query: 460 VYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 281 ++ G + L F ++ ++I+++ G G+GF+S+ A ++ + Sbjct: 197 IFVGGIAKSLSIGELSFLFSKYGPILSMKLIYDKTKGEPNGYGFISYPLGSQASLCIKEL 256 Query: 280 DGVELDGRPL 251 +G ++G L Sbjct: 257 NGRTVNGSTL 266
>MSI1H_RAT (Q8K3P4) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 36.2 bits (82), Expect = 0.051 Identities = 17/52 (32%), Positives = 28/52 (53%) Frame = -3 Query: 469 TXKVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHT 314 T K++ G + +K FE + A ++F++ T R RGFGFV+F + Sbjct: 108 TKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFES 159 Score = 31.2 bits (69), Expect = 1.7 Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 2/50 (4%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERD--TGRSRGFGFVSF 320 K++ G W + L+ F GQ G V ++ RD T RSRGFGFV+F Sbjct: 21 KMFIGGLSWQTTQEGLREYF-GQFGEVKECLVM-RDPLTKRSRGFGFVTF 68
>MSI1H_MOUSE (Q61474) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 36.2 bits (82), Expect = 0.051 Identities = 17/52 (32%), Positives = 28/52 (53%) Frame = -3 Query: 469 TXKVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHT 314 T K++ G + +K FE + A ++F++ T R RGFGFV+F + Sbjct: 108 TKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFES 159 Score = 31.2 bits (69), Expect = 1.7 Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 2/50 (4%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERD--TGRSRGFGFVSF 320 K++ G W + L+ F GQ G V ++ RD T RSRGFGFV+F Sbjct: 21 KMFIGGLSWQTTQEGLREYF-GQFGEVKECLVM-RDPLTKRSRGFGFVTF 68
>MSI1H_HUMAN (O43347) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 36.2 bits (82), Expect = 0.051 Identities = 17/52 (32%), Positives = 28/52 (53%) Frame = -3 Query: 469 TXKVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHT 314 T K++ G + +K FE + A ++F++ T R RGFGFV+F + Sbjct: 108 TKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFES 159 Score = 31.2 bits (69), Expect = 1.7 Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 2/50 (4%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERD--TGRSRGFGFVSF 320 K++ G W + L+ F GQ G V ++ RD T RSRGFGFV+F Sbjct: 21 KMFIGGLSWQTTQEGLREYF-GQFGEVKECLVM-RDPLTKRSRGFGFVTF 68
>ELAV4_RAT (O09032) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 373 Score = 36.2 bits (82), Expect = 0.051 Identities = 19/77 (24%), Positives = 40/77 (51%) Frame = -3 Query: 418 LKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSL 239 L+ F ++ +R++ ++ TG SRG GF+ F +A+ A++ ++G + G +++ Sbjct: 141 LEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITV 200 Query: 238 AAQNPPAGSTPSTAQSQ 188 N P+ + SQ Sbjct: 201 KFANNPSQKSSQALLSQ 217 Score = 36.2 bits (82), Expect = 0.051 Identities = 14/47 (29%), Positives = 33/47 (70%) Frame = -3 Query: 376 RVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 236 +++ ++ TG+S G+GFV++ +DA+ A+ ++G+ L + +++S A Sbjct: 69 KLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 115 Score = 33.1 bits (74), Expect = 0.44 Identities = 15/45 (33%), Positives = 28/45 (62%) Frame = -3 Query: 376 RVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLS 242 +VI + +T + +GFGFV+ +A A+ +++G L R L++S Sbjct: 320 KVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVS 364
>RB87F_DROME (P48810) Heterogeneous nuclear ribonucleoprotein 87F (HRP36.1| protein) (Protein P11) Length = 385 Score = 36.2 bits (82), Expect = 0.051 Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 4/89 (4%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSF---HTIQDAK-A 296 K++ G + D LK FE +V V+ + T RSRGFGF+++ + I +A+ A Sbjct: 25 KLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQSYMIDNAQNA 84 Query: 295 ALQAMDGVELDGRPLRLSLAAQNPPAGST 209 +DG ++ + +P AG+T Sbjct: 85 RPHKIDGRTVEPKRAVPRQEIDSPNAGAT 113 Score = 32.0 bits (71), Expect = 0.97 Identities = 18/80 (22%), Positives = 37/80 (46%), Gaps = 1/80 (1%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDA-KAALQ 287 K++ G + L+ F+ +V ++ ++DTG+ RGF F+ F K LQ Sbjct: 116 KLFVGGLRDDHDEECLREYFKDFGQIVSVNIVSDKDTGKKRGFAFIEFDDYDPVDKIILQ 175 Query: 286 AMDGVELDGRPLRLSLAAQN 227 ++ ++ ++A Q+ Sbjct: 176 KTHSIKNKTLDVKKAIAKQD 195
>ELAV4_MOUSE (Q61701) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 385 Score = 36.2 bits (82), Expect = 0.051 Identities = 19/77 (24%), Positives = 40/77 (51%) Frame = -3 Query: 418 LKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSL 239 L+ F ++ +R++ ++ TG SRG GF+ F +A+ A++ ++G + G +++ Sbjct: 153 LEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITV 212 Query: 238 AAQNPPAGSTPSTAQSQ 188 N P+ + SQ Sbjct: 213 KFANNPSQKSSQALLSQ 229 Score = 36.2 bits (82), Expect = 0.051 Identities = 14/47 (29%), Positives = 33/47 (70%) Frame = -3 Query: 376 RVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 236 +++ ++ TG+S G+GFV++ +DA+ A+ ++G+ L + +++S A Sbjct: 81 KLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 127 Score = 33.1 bits (74), Expect = 0.44 Identities = 15/45 (33%), Positives = 28/45 (62%) Frame = -3 Query: 376 RVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLS 242 +VI + +T + +GFGFV+ +A A+ +++G L R L++S Sbjct: 332 KVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVS 376
>ELAV4_HUMAN (P26378) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 380 Score = 36.2 bits (82), Expect = 0.051 Identities = 19/77 (24%), Positives = 40/77 (51%) Frame = -3 Query: 418 LKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSL 239 L+ F ++ +R++ ++ TG SRG GF+ F +A+ A++ ++G + G +++ Sbjct: 148 LEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITV 207 Query: 238 AAQNPPAGSTPSTAQSQ 188 N P+ + SQ Sbjct: 208 KFANNPSQKSSQALLSQ 224 Score = 36.2 bits (82), Expect = 0.051 Identities = 14/47 (29%), Positives = 33/47 (70%) Frame = -3 Query: 376 RVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 236 +++ ++ TG+S G+GFV++ +DA+ A+ ++G+ L + +++S A Sbjct: 76 KLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 122 Score = 33.1 bits (74), Expect = 0.44 Identities = 15/45 (33%), Positives = 28/45 (62%) Frame = -3 Query: 376 RVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLS 242 +VI + +T + +GFGFV+ +A A+ +++G L R L++S Sbjct: 327 KVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVS 371
>ROA0_HUMAN (Q13151) Heterogeneous nuclear ribonucleoprotein A0 (hnRNP A0)| Length = 305 Score = 36.2 bits (82), Expect = 0.051 Identities = 23/76 (30%), Positives = 35/76 (46%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 284 K++ G L+ FE L V+ T RSR FGFV++ +++A AA+ A Sbjct: 8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 67 Query: 283 MDGVELDGRPLRLSLA 236 +DG + L A Sbjct: 68 SPHA-VDGNTVELKRA 82
>RBM11_HUMAN (P57052) Putative RNA-binding protein 11 (RNA-binding motif protein| 11) Length = 281 Score = 35.8 bits (81), Expect = 0.067 Identities = 21/72 (29%), Positives = 35/72 (48%) Frame = -3 Query: 460 VYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 281 V+ GN VR + L F L + +R+ G+ + FGFV F + A+ + Sbjct: 12 VFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALL 70 Query: 280 DGVELDGRPLRL 245 +G+ L GRP+ + Sbjct: 71 NGIRLYGRPINV 82
>RU17_ARATH (Q42404) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 427 Score = 35.8 bits (81), Expect = 0.067 Identities = 15/54 (27%), Positives = 30/54 (55%) Frame = -3 Query: 418 LKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGR 257 +K FE + ++ ++ T + +G+ F+ + +D KAA + DG ++DGR Sbjct: 154 IKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAAYKQADGQKIDGR 207
>RO22_XENLA (P51990) Heterogeneous nuclear ribonucleoprotein A2 homolog 2| (hnRNP A2(B)) Length = 358 Score = 35.8 bits (81), Expect = 0.067 Identities = 21/69 (30%), Positives = 36/69 (52%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 284 K++ G + ++L+ +E L V+ + + RSRGFGFV+F + + AA+ A Sbjct: 10 KLFIGGLSFETTEESLRNFYEQWGQLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMSA 69 Query: 283 MDGVELDGR 257 +DGR Sbjct: 70 RPHT-IDGR 77 Score = 32.0 bits (71), Expect = 0.97 Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 1/79 (1%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDA-KAALQ 287 K++ G L+ FE + +I ++ +G+ RGFGFV+F+ K LQ Sbjct: 101 KLFVGGIKEDTEEHHLREYFEEYGKIESTEIITDKQSGKKRGFGFVTFNDHDPVDKIVLQ 160 Query: 286 AMDGVELDGRPLRLSLAAQ 230 + +R +L+ Q Sbjct: 161 KYHTINGHNAEVRKALSKQ 179
>RBM7_MOUSE (Q9CQT2) RNA-binding protein 7 (RNA-binding motif protein 7)| Length = 265 Score = 35.4 bits (80), Expect = 0.088 Identities = 21/98 (21%), Positives = 46/98 (46%) Frame = -3 Query: 460 VYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 281 ++ GN V + L F ++ ++ ++D G+ + F FV+F A+ + Sbjct: 12 LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKD-GKLKQFAFVNFKHEVSVPYAMNLL 70 Query: 280 DGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKNSLT 167 +G++L GRP+++ + + A S + Q +L+ Sbjct: 71 NGIKLFGRPIKIQFRSGSSHASQDASVSYPQHHVGNLS 108
>MSI2H_MOUSE (Q920Q6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 346 Score = 35.4 bits (80), Expect = 0.088 Identities = 17/50 (34%), Positives = 27/50 (54%) Frame = -3 Query: 469 TXKVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSF 320 T K++ G + +K FE + A ++F++ T R RGFGFV+F Sbjct: 109 TKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTF 158 Score = 33.9 bits (76), Expect = 0.26 Identities = 17/48 (35%), Positives = 25/48 (52%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSF 320 K++ G W D+L+ F + V+ + T RSRGFGFV+F Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTF 69
>IF34_MOUSE (Q9Z1D1) Eukaryotic translation initiation factor 3 subunit 4| (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3 p42) (Eif3p42) (eIF3g) Length = 320 Score = 35.4 bits (80), Expect = 0.088 Identities = 14/34 (41%), Positives = 22/34 (64%) Frame = -3 Query: 364 ERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELD 263 ++ TG+S+GF F+SFH +DA A+ + G D Sbjct: 273 DKTTGQSKGFAFISFHRREDAARAIAGVSGFGYD 306
>IF34_HUMAN (O75821) Eukaryotic translation initiation factor 3 subunit 4| (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3 p42) (eIF3g) Length = 320 Score = 35.4 bits (80), Expect = 0.088 Identities = 14/34 (41%), Positives = 22/34 (64%) Frame = -3 Query: 364 ERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELD 263 ++ TG+S+GF F+SFH +DA A+ + G D Sbjct: 273 DKTTGQSKGFAFISFHRREDAARAIAGVSGFGYD 306
>MSI2H_HUMAN (Q96DH6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 328 Score = 35.4 bits (80), Expect = 0.088 Identities = 17/50 (34%), Positives = 27/50 (54%) Frame = -3 Query: 469 TXKVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSF 320 T K++ G + +K FE + A ++F++ T R RGFGFV+F Sbjct: 109 TKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTF 158 Score = 33.9 bits (76), Expect = 0.26 Identities = 17/48 (35%), Positives = 25/48 (52%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSF 320 K++ G W D+L+ F + V+ + T RSRGFGFV+F Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTF 69
>MK67I_BRARE (Q8JIY8) MKI67 FHA domain-interacting nucleolar phosphoprotein-like| (Nucleolar phosphoprotein NOPP34-like protein) Length = 269 Score = 35.4 bits (80), Expect = 0.088 Identities = 21/71 (29%), Positives = 35/71 (49%) Frame = -3 Query: 460 VYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 281 +Y G+ G+ LK FE ++ RV + TG S+G+GFV F + AK + M Sbjct: 47 LYVGHLPRGLFEPQLKSYFEQFGKVLRLRVSRSKKTGGSKGYGFVEFECDEVAKIVAETM 106 Query: 280 DGVELDGRPLR 248 + + R ++ Sbjct: 107 NNYLMGERIIK 117
>BOLL_MOUSE (Q924M5) Protein boule-like| Length = 281 Score = 35.4 bits (80), Expect = 0.088 Identities = 18/83 (21%), Positives = 40/83 (48%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 284 +++ G + + L+ F + +++ +R G S+G+GF++F T +DA+ LQ Sbjct: 34 RIFVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFITFETQEDAQKILQE 92 Query: 283 MDGVELDGRPLRLSLAAQNPPAG 215 + + + L + A + G Sbjct: 93 AEKLNYKDKKLNIGPAIRKQQVG 115
>RBM19_HUMAN (Q9Y4C8) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 960 Score = 35.4 bits (80), Expect = 0.088 Identities = 22/41 (53%), Positives = 23/41 (56%), Gaps = 1/41 (2%) Frame = -3 Query: 355 TGRSRGFGFVSFHTIQDAKAALQAM-DGVELDGRPLRLSLA 236 TG RGFGFV F T QDAK A A+ L GR L L A Sbjct: 870 TGTHRGFGFVDFLTKQDAKRAFNALCHSTHLYGRRLVLEWA 910 Score = 30.4 bits (67), Expect = 2.8 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%) Frame = -3 Query: 346 SRGFGFVSFHTIQDAKAALQAMDGVELDGRPL--RLSLAAQNP 224 S GFGFV + + A+ AL+ + G +DG L R+S A P Sbjct: 773 SMGFGFVEYRKPEQAQKALKQLQGHVVDGHKLEVRISERATKP 815
>ELAV_DROME (P16914) Protein elav (Embryonic lethal abnormal visual protein)| Length = 483 Score = 35.4 bits (80), Expect = 0.088 Identities = 15/45 (33%), Positives = 29/45 (64%) Frame = -3 Query: 352 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPA 218 G+S G+GFV++ QDA+ A+ ++G+ L + +++S A + A Sbjct: 200 GQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSDA 244 Score = 33.1 bits (74), Expect = 0.44 Identities = 18/77 (23%), Positives = 36/77 (46%) Frame = -3 Query: 472 GTXKVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAA 293 G ++ N AL F + +++ + T + +G+GFVS +A A Sbjct: 400 GAYPIFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMA 459 Query: 292 LQAMDGVELDGRPLRLS 242 ++A++G + R L++S Sbjct: 460 IRALNGYTMGNRVLQVS 476
>ROA1_XENLA (P17130) Heterogeneous nuclear ribonucleoproteins A1 homolog (hnRNP| A1) (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 365 Score = 35.4 bits (80), Expect = 0.088 Identities = 21/69 (30%), Positives = 38/69 (55%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 284 K++ G + ++L+ FE L V+ + ++ RSRGFGFV++ + + AA+ A Sbjct: 15 KLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYLSTDEVDAAMTA 74 Query: 283 MDGVELDGR 257 ++DGR Sbjct: 75 RPH-KVDGR 82
>RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 952 Score = 35.4 bits (80), Expect = 0.088 Identities = 22/41 (53%), Positives = 23/41 (56%), Gaps = 1/41 (2%) Frame = -3 Query: 355 TGRSRGFGFVSFHTIQDAKAALQAM-DGVELDGRPLRLSLA 236 TG RGFGFV F T QDAK A A+ L GR L L A Sbjct: 862 TGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWA 902 Score = 32.3 bits (72), Expect = 0.74 Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 2/48 (4%) Frame = -3 Query: 346 SRGFGFVSFHTIQDAKAALQAMDGVELDGRPL--RLSLAAQNPPAGST 209 S GFGFV + + A+ AL+ + G +DG L R+S A P ST Sbjct: 765 SMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISERATKPALTST 812
>ELAV_DROVI (P23241) Protein elav (Embryonic lethal abnormal visual protein)| Length = 519 Score = 35.4 bits (80), Expect = 0.088 Identities = 15/45 (33%), Positives = 29/45 (64%) Frame = -3 Query: 352 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPA 218 G+S G+GFV++ QDA+ A+ ++G+ L + +++S A + A Sbjct: 236 GQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSDA 280 Score = 33.1 bits (74), Expect = 0.44 Identities = 18/77 (23%), Positives = 36/77 (46%) Frame = -3 Query: 472 GTXKVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAA 293 G ++ N AL F + +++ + T + +G+GFVS +A A Sbjct: 436 GAYPIFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMA 495 Query: 292 LQAMDGVELDGRPLRLS 242 ++A++G + R L++S Sbjct: 496 IRALNGYTMGNRVLQVS 512
>BOLL_MACFA (Q8WP23) Protein boule-like| Length = 283 Score = 35.4 bits (80), Expect = 0.088 Identities = 19/83 (22%), Positives = 39/83 (46%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 284 +++ G + L+ F + +++ +R G S+G+GFV+F T +DA+ LQ Sbjct: 34 RIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFVTFETQEDAQKILQE 92 Query: 283 MDGVELDGRPLRLSLAAQNPPAG 215 + + + L + A + G Sbjct: 93 AEKLNYKDKKLNIGPAIRKQQVG 115
>BOLL_HUMAN (Q8N9W6) Protein boule-like| Length = 283 Score = 35.4 bits (80), Expect = 0.088 Identities = 19/83 (22%), Positives = 39/83 (46%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 284 +++ G + L+ F + +++ +R G S+G+GFV+F T +DA+ LQ Sbjct: 34 RIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFVTFETQEDAQKILQE 92 Query: 283 MDGVELDGRPLRLSLAAQNPPAG 215 + + + L + A + G Sbjct: 93 AEKLNYKDKKLNIGPAIRKQQVG 115
>SRR55_DROME (P26686) Serine-arginine protein 55 (SRP55) (Protein enhancer of| deformed) (52-kDa bracketing protein) (B52 protein) Length = 375 Score = 35.0 bits (79), Expect = 0.11 Identities = 23/68 (33%), Positives = 32/68 (47%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 284 +VY G +GVR L+ F+G RD G+GFV F +DA A+ Sbjct: 4 RVYVGGLPYGVRERDLERFFKGYGR--------TRDILIKNGYGFVEFEDYRDADDAVYE 55 Query: 283 MDGVELDG 260 ++G EL G Sbjct: 56 LNGKELLG 63
>U2AF2_DROME (Q24562) Splicing factor U2AF 50 kDa subunit (U2 auxiliary factor| 50 kDa subunit) (U2 snRNP auxiliary factor large subunit) Length = 416 Score = 35.0 bits (79), Expect = 0.11 Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 5/78 (6%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVG-----ARVIFERDTGRSRGFGFVSFHTIQDAK 299 ++Y GN +GV + + F Q LVG + + F F+ F +I + Sbjct: 94 RLYVGNIPFGVTEEEMMEFFNQQMHLVGLAQAAGSPVLACQINLDKNFAFLEFRSIDETT 153 Query: 298 AALQAMDGVELDGRPLRL 245 A+ A DG+ L G+ L++ Sbjct: 154 QAM-AFDGINLKGQSLKI 170
>PAB2_SCHPO (O14327) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (Poly(A)-binding protein II) (PABII) Length = 166 Score = 35.0 bits (79), Expect = 0.11 Identities = 22/83 (26%), Positives = 38/83 (45%) Frame = -3 Query: 460 VYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 281 VY GN + V + L+ F + ++ ++ TG +GF ++ F AL + Sbjct: 57 VYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNAL-LL 115 Query: 280 DGVELDGRPLRLSLAAQNPPAGS 212 +G L RPL+++ N P S Sbjct: 116 NGSMLHERPLKVTPKRTNVPGMS 138
>RBM7_BOVIN (Q3MHY8) RNA-binding protein 7 (RNA-binding motif protein 7)| Length = 262 Score = 34.7 bits (78), Expect = 0.15 Identities = 21/91 (23%), Positives = 43/91 (47%) Frame = -3 Query: 460 VYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 281 ++ GN V + L F ++ ++ ++D G+ + F FV+F A+ + Sbjct: 12 LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKD-GKPKQFAFVNFKHEVSVPYAMNLL 70 Query: 280 DGVELDGRPLRLSLAAQNPPAGSTPSTAQSQ 188 +G++L GRP+++ A + A S + Q Sbjct: 71 NGIKLFGRPIKIQFRAGSSHASQEVSLSYPQ 101
>RU17_XENTR (Q66II8) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 471 Score = 34.7 bits (78), Expect = 0.15 Identities = 14/68 (20%), Positives = 33/68 (48%) Frame = -3 Query: 460 VYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 281 ++ + L+ FE + +++ + +G+ RG+ F+ + +D +A + Sbjct: 105 LFVARVNYDTTESKLRREFEVYGPIKRIHMVYNKRSGKPRGYAFIEYEHERDMHSAYKHA 164 Query: 280 DGVELDGR 257 DG ++DGR Sbjct: 165 DGKKIDGR 172
>HNRPD_RAT (Q9JJ54) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 353 Score = 34.7 bits (78), Expect = 0.15 Identities = 21/65 (32%), Positives = 32/65 (49%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 284 K++ G W LK F +V + + TGRSRGFGFV F +++++ + Sbjct: 96 KMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLF---KESESVDKV 152 Query: 283 MDGVE 269 MD E Sbjct: 153 MDQKE 157
>RU17_MOUSE (Q62376) U1 small nuclear ribonucleoprotein 70 kDa (U1 SNRNP 70| kDa) (snRNP70) Length = 448 Score = 34.7 bits (78), Expect = 0.15 Identities = 14/68 (20%), Positives = 33/68 (48%) Frame = -3 Query: 460 VYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 281 ++ + L+ FE + +++ + +G+ RG+ F+ + +D +A + Sbjct: 105 LFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHA 164 Query: 280 DGVELDGR 257 DG ++DGR Sbjct: 165 DGKKIDGR 172
>RU17_HUMAN (P08621) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 437 Score = 34.7 bits (78), Expect = 0.15 Identities = 14/68 (20%), Positives = 33/68 (48%) Frame = -3 Query: 460 VYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 281 ++ + L+ FE + +++ + +G+ RG+ F+ + +D +A + Sbjct: 105 LFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHA 164 Query: 280 DGVELDGR 257 DG ++DGR Sbjct: 165 DGKKIDGR 172
>RBP1_DROME (Q02427) RNA-binding protein 1| Length = 144 Score = 34.7 bits (78), Expect = 0.15 Identities = 23/77 (29%), Positives = 34/77 (44%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 284 KVY GN G ++ AF L V GF FV F +DA+ A +A Sbjct: 12 KVYVGNLGSSASKHEIEGAFAKYGPLRNVWV-----ARNPPGFAFVEFEDRRDAEDATRA 66 Query: 283 MDGVELDGRPLRLSLAA 233 +DG G +R+ +++ Sbjct: 67 LDGTRCCGTRIRVEMSS 83
>RAVR1_MOUSE (Q9CW46) Protein raver-1| Length = 748 Score = 34.3 bits (77), Expect = 0.20 Identities = 17/47 (36%), Positives = 25/47 (53%) Frame = -3 Query: 352 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGS 212 G+ +GF + + T + A+AA + DG L LR+S A PP S Sbjct: 259 GQLKGFAVLEYETAEMAEAAQERADGQALGDSHLRVSFCAPGPPGRS 305
>ACF_MOUSE (Q5YD48) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 595 Score = 34.3 bits (77), Expect = 0.20 Identities = 15/36 (41%), Positives = 24/36 (66%) Frame = -3 Query: 343 RGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 236 R + FV F +DA A++A++G LDG P+ ++LA Sbjct: 266 RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLA 301
>TCG1_SCHPO (Q9HEQ9) Single-stranded TG1-3 DNA-binding protein| Length = 348 Score = 34.3 bits (77), Expect = 0.20 Identities = 16/50 (32%), Positives = 26/50 (52%) Frame = -3 Query: 415 KXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVEL 266 + A P + R+ + R RGFGFVSF +D A++ M+G ++ Sbjct: 234 RIAVRSLPPYIIRRIKLRGEQRRGRGFGFVSFANAEDQSRAIEEMNGKQV 283
>ACF_RAT (Q923K9) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 594 Score = 34.3 bits (77), Expect = 0.20 Identities = 15/36 (41%), Positives = 24/36 (66%) Frame = -3 Query: 343 RGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 236 R + FV F +DA A++A++G LDG P+ ++LA Sbjct: 266 RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLA 301
>ACF_HUMAN (Q9NQ94) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 594 Score = 34.3 bits (77), Expect = 0.20 Identities = 15/36 (41%), Positives = 24/36 (66%) Frame = -3 Query: 343 RGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 236 R + FV F +DA A++A++G LDG P+ ++LA Sbjct: 266 RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLA 301
>HNRPD_MOUSE (Q60668) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 355 Score = 34.3 bits (77), Expect = 0.20 Identities = 21/65 (32%), Positives = 32/65 (49%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 284 K++ G W LK F +V + + TGRSRGFGFV F +++++ + Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF---KESESVDKV 154 Query: 283 MDGVE 269 MD E Sbjct: 155 MDQKE 159
>HNRPD_HUMAN (Q14103) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 355 Score = 34.3 bits (77), Expect = 0.20 Identities = 21/65 (32%), Positives = 32/65 (49%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 284 K++ G W LK F +V + + TGRSRGFGFV F +++++ + Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF---KESESVDKV 154 Query: 283 MDGVE 269 MD E Sbjct: 155 MDQKE 159
>ACF_PONPY (Q5R9H4) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 587 Score = 34.3 bits (77), Expect = 0.20 Identities = 15/36 (41%), Positives = 24/36 (66%) Frame = -3 Query: 343 RGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 236 R + FV F +DA A++A++G LDG P+ ++LA Sbjct: 266 RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLA 301
>ARP2_PLAFA (P13824) Clustered-asparagine-rich protein (CARP)| Length = 443 Score = 34.3 bits (77), Expect = 0.20 Identities = 15/38 (39%), Positives = 26/38 (68%) Frame = -3 Query: 352 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSL 239 GR+ GFGFVS+ + A+ A+Q M+G ++ + L++ L Sbjct: 395 GRNSGFGFVSYDNVISAQHAIQFMNGYFVNNKYLKVQL 432
>RO21_XENLA (P51989) Heterogeneous nuclear ribonucleoprotein A2 homolog 1| (hnRNP A2(A)) Length = 346 Score = 33.9 bits (76), Expect = 0.26 Identities = 21/69 (30%), Positives = 36/69 (52%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 284 K++ G + ++L+ +E L V+ + + RSRGFGFV+F + + AA+ A Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGTLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAM-A 68 Query: 283 MDGVELDGR 257 +DGR Sbjct: 69 TRPHTIDGR 77
>RBM5_HUMAN (P52756) RNA-binding protein 5 (RNA-binding motif protein 5)| (Putative tumor suppressor LUCA15) (G15 protein) (NY-REN-9 antigen) Length = 815 Score = 33.9 bits (76), Expect = 0.26 Identities = 20/43 (46%), Positives = 28/43 (65%), Gaps = 1/43 (2%) Frame = -3 Query: 409 AFEG-QPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 284 +FEG QP V + +R TG SRGF FV F+ +QDA + ++A Sbjct: 120 SFEGPQPADVR---LMKRKTGVSRGFAFVEFYHLQDATSWMEA 159 Score = 30.4 bits (67), Expect = 2.8 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 4/51 (7%) Frame = -3 Query: 376 RVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDG----VELDGRPLRLSLA 236 R+I ++ T ++RGF FV + DA LQ + +++DG+ + + A Sbjct: 263 RLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGVDFA 313
>NGR1_YEAST (P32831) Negative growth regulatory protein NGR1 (RNA-binding| protein RBP1) Length = 672 Score = 33.5 bits (75), Expect = 0.33 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 3/58 (5%) Frame = -3 Query: 334 GFVSFHTIQDAKAALQAMDGVELDGRPLRLSL---AAQNPPAGSTPSTAQSQQEKNSL 170 GFV F DA+A++Q + G + G P+RLS ++ N ST A N L Sbjct: 398 GFVKFEKRIDAEASIQGLQGFIVGGSPIRLSWGRPSSSNAKTNSTIMGASQYMSSNGL 455
>IF4H_MOUSE (Q9WUK2) Eukaryotic translation initiation factor 4H (eIF-4H)| (Williams-Beuren syndrome chromosome region 1 protein homolog) Length = 247 Score = 33.5 bits (75), Expect = 0.33 Identities = 21/74 (28%), Positives = 35/74 (47%) Frame = -3 Query: 457 YAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMD 278 Y GN + + F+ + R++ ++DT + +GF +V F + K AL D Sbjct: 44 YVGNLPFNTVQGDIDAIFKDL-SIRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYD 101 Query: 277 GVELDGRPLRLSLA 236 G L R LR+ +A Sbjct: 102 GALLGDRSLRVDIA 115
>IF4H_HUMAN (Q15056) Eukaryotic translation initiation factor 4H (eIF-4H)| (Williams-Beuren syndrome chromosome region 1 protein) Length = 247 Score = 33.5 bits (75), Expect = 0.33 Identities = 21/74 (28%), Positives = 35/74 (47%) Frame = -3 Query: 457 YAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMD 278 Y GN + + F+ + R++ ++DT + +GF +V F + K AL D Sbjct: 44 YVGNLPFNTVQGDIDAIFKDL-SIRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYD 101 Query: 277 GVELDGRPLRLSLA 236 G L R LR+ +A Sbjct: 102 GALLGDRSLRVDIA 115
>A2BP1_HUMAN (Q9NWB1) Ataxin-2-binding protein 1| Length = 397 Score = 33.5 bits (75), Expect = 0.33 Identities = 20/76 (26%), Positives = 37/76 (48%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 284 +++ N + R L+ F ++ +IF S+GFGFV+F DA A + Sbjct: 118 RLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG--SKGFGFVTFENSADADRAREK 175 Query: 283 MDGVELDGRPLRLSLA 236 + G ++GR + ++ A Sbjct: 176 LHGTVVEGRKIEVNNA 191
>RBM9_HUMAN (O43251) RNA-binding protein 9 (RNA-binding motif protein 9)| (Hexaribonucleotide-binding protein 2) (Repressor of tamoxifen transcriptional activity) Length = 390 Score = 33.5 bits (75), Expect = 0.33 Identities = 20/76 (26%), Positives = 37/76 (48%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 284 +++ N + R L+ F ++ +IF S+GFGFV+F DA A + Sbjct: 122 RLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG--SKGFGFVTFENSADADRAREK 179 Query: 283 MDGVELDGRPLRLSLA 236 + G ++GR + ++ A Sbjct: 180 LHGTVVEGRKIEVNNA 195
>A2BP1_MOUSE (Q9JJ43) Ataxin-2-binding protein 1| Length = 396 Score = 33.5 bits (75), Expect = 0.33 Identities = 20/76 (26%), Positives = 37/76 (48%) Frame = -3 Query: 463 KVYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 284 +++ N + R L+ F ++ +IF S+GFGFV+F DA A + Sbjct: 117 RLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG--SKGFGFVTFENSADADRAREK 174 Query: 283 MDGVELDGRPLRLSLA 236 + G ++GR + ++ A Sbjct: 175 LHGTVVEGRKIEVNNA 190
>SFRS5_MOUSE (O35326) Splicing factor, arginine/serine-rich 5 (Pre-mRNA-splicing| factor SRP40) (Delayed-early protein HRS) Length = 270 Score = 33.1 bits (74), Expect = 0.44 Identities = 16/32 (50%), Positives = 19/32 (59%) Frame = -3 Query: 361 RDTGRSRGFGFVSFHTIQDAKAALQAMDGVEL 266 RD RGFGFV F +DA A+ +DG EL Sbjct: 31 RDIDLKRGFGFVEFEDPRDADDAVYELDGKEL 62
>IF34_YEAST (Q04067) Eukaryotic translation initiation factor 3 RNA-binding| subunit (eIF-3 RNA-binding subunit) (eIF3 p33) (Translation initiation factor eIF3, p33 subunit) Length = 274 Score = 33.1 bits (74), Expect = 0.44 Identities = 14/33 (42%), Positives = 24/33 (72%) Frame = -3 Query: 373 VIFERDTGRSRGFGFVSFHTIQDAKAALQAMDG 275 V+ ++TG+SRG FV+F + + A+ AL+ +DG Sbjct: 223 VVRNKETGKSRGLAFVTFSSEEVAEQALRFLDG 255
>SFRS5_RAT (Q09167) Splicing factor, arginine/serine-rich 5 (Pre-mRNA-splicing| factor SRP40) (Insulin-induced growth response protein CL-4) (Delayed-early protein HRS) Length = 269 Score = 33.1 bits (74), Expect = 0.44 Identities = 16/32 (50%), Positives = 19/32 (59%) Frame = -3 Query: 361 RDTGRSRGFGFVSFHTIQDAKAALQAMDGVEL 266 RD RGFGFV F +DA A+ +DG EL Sbjct: 31 RDIDLKRGFGFVEFEDPRDADDAVYELDGKEL 62
>RBMX2_MOUSE (Q8R0F5) RNA-binding motif protein, X-linked 2| Length = 326 Score = 33.1 bits (74), Expect = 0.44 Identities = 14/72 (19%), Positives = 36/72 (50%) Frame = -3 Query: 460 VYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 281 ++ G + + + F +V ++ ++ TG+S+GF F+ + + A+ Sbjct: 38 IFVGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNF 97 Query: 280 DGVELDGRPLRL 245 +G+++ GR +R+ Sbjct: 98 NGIKIKGRTIRV 109
>ELAV1_HUMAN (Q15717) ELAV-like protein 1 (Hu-antigen R) (HuR)| Length = 326 Score = 33.1 bits (74), Expect = 0.44 Identities = 18/73 (24%), Positives = 36/73 (49%) Frame = -3 Query: 460 VYAGNXGWGVRADALKXAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 281 ++ N G L F + +VI + +T + +GFGFV+ ++A A+ ++ Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305 Query: 280 DGVELDGRPLRLS 242 +G L + L++S Sbjct: 306 NGYRLGDKILQVS 318 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 71,798,729 Number of Sequences: 219361 Number of extensions: 1438071 Number of successful extensions: 4557 Number of sequences better than 10.0: 313 Number of HSP's better than 10.0 without gapping: 4167 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4554 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3638905326 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
