Clone Name | rbasd26a06 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_112307.2| Arabidopsis thaliana ATP binding AT3G14470 mRNA, complete cds Length = 3308 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 647 ttcttgagagacgggaacaagtctc 671 ||||||||||| ||||||||||||| Sbjct: 2642 ttcttgagagaagggaacaagtctc 2618
>gb|AC167978.4| Mus musculus BAC clone RP23-72M20 from chromosome 7, complete sequence Length = 214959 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 93 aacccccttctccccagtttc 113 ||||||||||||||||||||| Sbjct: 1490 aacccccttctccccagtttc 1510
>gb|BT018632.1| Zea mays clone EL01N0503G08.d mRNA sequence Length = 1714 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 103 tccccagtttctgataaatca 123 ||||||||||||||||||||| Sbjct: 827 tccccagtttctgataaatca 847
>gb|BC029705.1| Mus musculus suprabasin, mRNA (cDNA clone IMAGE:5007631), partial cds Length = 2476 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 93 aacccccttctccccagtttc 113 ||||||||||||||||||||| Sbjct: 882 aacccccttctccccagtttc 862
>gb|AC000353.27| Homo sapiens Chromosome 11q13 BAC Clone 18h3, complete sequence Length = 233089 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 124 acccgcagcccagctgctctc 144 ||||||||||||||||||||| Sbjct: 142073 acccgcagcccagctgctctc 142053
>gb|AC139133.11| Mus musculus chromosome 15, clone RP23-412G9, complete sequence Length = 182517 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 88 acataaacccccttctccccagttt 112 |||||| |||||||||||||||||| Sbjct: 104184 acataagcccccttctccccagttt 104208
>emb|BX824842.1|CNS0A7VT Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH76ZG02 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 2152 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 647 ttcttgagagacgggaacaagtctc 671 ||||||||||| ||||||||||||| Sbjct: 1518 ttcttgagagaagggaacaagtctc 1494
>gb|AY220877.1| Homo sapiens requiem, apoptosis response zinc finger gene (REQ) gene, complete cds Length = 20369 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 124 acccgcagcccagctgctctc 144 ||||||||||||||||||||| Sbjct: 20302 acccgcagcccagctgctctc 20282
>dbj|AB028617.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MOA2 Length = 52232 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 647 ttcttgagagacgggaacaagtctc 671 ||||||||||| ||||||||||||| Sbjct: 40773 ttcttgagagaagggaacaagtctc 40749
>dbj|AP000944.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-867O8, complete sequence Length = 219246 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 124 acccgcagcccagctgctctc 144 ||||||||||||||||||||| Sbjct: 94988 acccgcagcccagctgctctc 94968
>gb|AC165340.3| Mus musculus BAC clone RP24-63G4 from chromosome 7, complete sequence Length = 241077 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 93 aacccccttctccccagtttc 113 ||||||||||||||||||||| Sbjct: 76864 aacccccttctccccagtttc 76844
>emb|BX294149.1| Pirellula sp. strain 1 complete genome; segment 17/24 Length = 314250 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 415 gcgtcggactgatcaatgga 434 |||||||||||||||||||| Sbjct: 10951 gcgtcggactgatcaatgga 10970 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 555 gcgtcggactgatcaatgga 574 |||||||||||||||||||| Sbjct: 10951 gcgtcggactgatcaatgga 10970
>gb|AC099065.2| Homo sapiens chromosome 1 clone RP11-105I12, complete sequence Length = 181253 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 97 cccttctccccagtttctga 116 |||||||||||||||||||| Sbjct: 26063 cccttctccccagtttctga 26044
>emb|BX649555.9| Zebrafish DNA sequence from clone CH211-117C13 in linkage group 16, complete sequence Length = 163314 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 atattgtacatattcaaccc 50 |||||||||||||||||||| Sbjct: 136030 atattgtacatattcaaccc 136049
>emb|BX248115.12| Zebrafish DNA sequence from clone CH211-208K15 in linkage group 16, complete sequence Length = 211852 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 atattgtacatattcaaccc 50 |||||||||||||||||||| Sbjct: 43355 atattgtacatattcaaccc 43374
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 77 gattctgttttacataaacc 96 |||||||||||||||||||| Sbjct: 23704295 gattctgttttacataaacc 23704314
>dbj|AB167469.1| Tuberaphis coreana gene for cathepsin B-S, partial cds Length = 2244 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 30 aatattgtacatattcaacc 49 |||||||||||||||||||| Sbjct: 1581 aatattgtacatattcaacc 1562
>dbj|AP003803.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1060_D03 Length = 102178 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 77 gattctgttttacataaacc 96 |||||||||||||||||||| Sbjct: 48909 gattctgttttacataaacc 48928
>emb|AL591946.14| Mouse DNA sequence from clone RP23-290M7 on chromosome 15, complete sequence Length = 188892 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 95 cccccttctccccagtttct 114 |||||||||||||||||||| Sbjct: 6062 cccccttctccccagtttct 6081 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,173,144 Number of Sequences: 3902068 Number of extensions: 4173144 Number of successful extensions: 78639 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 19 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 78548 Number of HSP's gapped (non-prelim): 91 length of query: 682 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 659 effective length of database: 17,143,297,704 effective search space: 11297433186936 effective search space used: 11297433186936 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)