ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd26a06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_112307.2| Arabidopsis thaliana ATP binding AT3G14470 mRNA... 42 2.4
2gb|AC167978.4| Mus musculus BAC clone RP23-72M20 from chromosome... 42 2.4
3gb|BT018632.1| Zea mays clone EL01N0503G08.d mRNA sequence 42 2.4
4gb|BC029705.1| Mus musculus suprabasin, mRNA (cDNA clone IMAGE:5... 42 2.4
5gb|AC000353.27| Homo sapiens Chromosome 11q13 BAC Clone 18h3, co... 42 2.4
6gb|AC139133.11| Mus musculus chromosome 15, clone RP23-412G9, co... 42 2.4
7emb|BX824842.1|CNS0A7VT Arabidopsis thaliana Full-length cDNA Co... 42 2.4
8gb|AY220877.1| Homo sapiens requiem, apoptosis response zinc fin... 42 2.4
9dbj|AB028617.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 42 2.4
10dbj|AP000944.4| Homo sapiens genomic DNA, chromosome 11 clone:RP... 42 2.4
11gb|AC165340.3| Mus musculus BAC clone RP24-63G4 from chromosome ... 42 2.4
12emb|BX294149.1| Pirellula sp. strain 1 complete genome; segment ... 40 9.3
13gb|AC099065.2| Homo sapiens chromosome 1 clone RP11-105I12, comp... 40 9.3
14emb|BX649555.9| Zebrafish DNA sequence from clone CH211-117C13 i... 40 9.3
15emb|BX248115.12| Zebrafish DNA sequence from clone CH211-208K15 ... 40 9.3
16dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.3
17dbj|AB167469.1| Tuberaphis coreana gene for cathepsin B-S, parti... 40 9.3
18dbj|AP003803.5| Oryza sativa (japonica cultivar-group) genomic D... 40 9.3
19emb|AL591946.14| Mouse DNA sequence from clone RP23-290M7 on chr... 40 9.3

>ref|NM_112307.2| Arabidopsis thaliana ATP binding AT3G14470 mRNA, complete cds
          Length = 3308

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 647  ttcttgagagacgggaacaagtctc 671
            ||||||||||| |||||||||||||
Sbjct: 2642 ttcttgagagaagggaacaagtctc 2618



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>gb|AC167978.4| Mus musculus BAC clone RP23-72M20 from chromosome 7, complete
            sequence
          Length = 214959

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 93   aacccccttctccccagtttc 113
            |||||||||||||||||||||
Sbjct: 1490 aacccccttctccccagtttc 1510



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>gb|BT018632.1| Zea mays clone EL01N0503G08.d mRNA sequence
          Length = 1714

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 103 tccccagtttctgataaatca 123
           |||||||||||||||||||||
Sbjct: 827 tccccagtttctgataaatca 847



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>gb|BC029705.1| Mus musculus suprabasin, mRNA (cDNA clone IMAGE:5007631), partial
           cds
          Length = 2476

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 93  aacccccttctccccagtttc 113
           |||||||||||||||||||||
Sbjct: 882 aacccccttctccccagtttc 862



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>gb|AC000353.27| Homo sapiens Chromosome 11q13 BAC Clone 18h3, complete sequence
          Length = 233089

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 124    acccgcagcccagctgctctc 144
              |||||||||||||||||||||
Sbjct: 142073 acccgcagcccagctgctctc 142053



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>gb|AC139133.11| Mus musculus chromosome 15, clone RP23-412G9, complete sequence
          Length = 182517

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 88     acataaacccccttctccccagttt 112
              |||||| ||||||||||||||||||
Sbjct: 104184 acataagcccccttctccccagttt 104208



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>emb|BX824842.1|CNS0A7VT Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH76ZG02 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 2152

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 647  ttcttgagagacgggaacaagtctc 671
            ||||||||||| |||||||||||||
Sbjct: 1518 ttcttgagagaagggaacaagtctc 1494



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>gb|AY220877.1| Homo sapiens requiem, apoptosis response zinc finger gene (REQ) gene,
             complete cds
          Length = 20369

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 124   acccgcagcccagctgctctc 144
             |||||||||||||||||||||
Sbjct: 20302 acccgcagcccagctgctctc 20282



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>dbj|AB028617.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MOA2
          Length = 52232

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 647   ttcttgagagacgggaacaagtctc 671
             ||||||||||| |||||||||||||
Sbjct: 40773 ttcttgagagaagggaacaagtctc 40749



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>dbj|AP000944.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-867O8, complete
             sequence
          Length = 219246

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 124   acccgcagcccagctgctctc 144
             |||||||||||||||||||||
Sbjct: 94988 acccgcagcccagctgctctc 94968



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>gb|AC165340.3| Mus musculus BAC clone RP24-63G4 from chromosome 7, complete sequence
          Length = 241077

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 93    aacccccttctccccagtttc 113
             |||||||||||||||||||||
Sbjct: 76864 aacccccttctccccagtttc 76844



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>emb|BX294149.1| Pirellula sp. strain 1 complete genome; segment 17/24
          Length = 314250

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 415   gcgtcggactgatcaatgga 434
             ||||||||||||||||||||
Sbjct: 10951 gcgtcggactgatcaatgga 10970



 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 555   gcgtcggactgatcaatgga 574
             ||||||||||||||||||||
Sbjct: 10951 gcgtcggactgatcaatgga 10970



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>gb|AC099065.2| Homo sapiens chromosome 1 clone RP11-105I12, complete sequence
          Length = 181253

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 97    cccttctccccagtttctga 116
             ||||||||||||||||||||
Sbjct: 26063 cccttctccccagtttctga 26044



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>emb|BX649555.9| Zebrafish DNA sequence from clone CH211-117C13 in linkage group 16,
              complete sequence
          Length = 163314

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 31     atattgtacatattcaaccc 50
              ||||||||||||||||||||
Sbjct: 136030 atattgtacatattcaaccc 136049



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>emb|BX248115.12| Zebrafish DNA sequence from clone CH211-208K15 in linkage group 16,
             complete sequence
          Length = 211852

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 31    atattgtacatattcaaccc 50
             ||||||||||||||||||||
Sbjct: 43355 atattgtacatattcaaccc 43374



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 77       gattctgttttacataaacc 96
                ||||||||||||||||||||
Sbjct: 23704295 gattctgttttacataaacc 23704314



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>dbj|AB167469.1| Tuberaphis coreana gene for cathepsin B-S, partial cds
          Length = 2244

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 30   aatattgtacatattcaacc 49
            ||||||||||||||||||||
Sbjct: 1581 aatattgtacatattcaacc 1562



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>dbj|AP003803.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1060_D03
          Length = 102178

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 77    gattctgttttacataaacc 96
             ||||||||||||||||||||
Sbjct: 48909 gattctgttttacataaacc 48928



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>emb|AL591946.14| Mouse DNA sequence from clone RP23-290M7 on chromosome 15, complete
            sequence
          Length = 188892

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 95   cccccttctccccagtttct 114
            ||||||||||||||||||||
Sbjct: 6062 cccccttctccccagtttct 6081


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,173,144
Number of Sequences: 3902068
Number of extensions: 4173144
Number of successful extensions: 78639
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 78548
Number of HSP's gapped (non-prelim): 91
length of query: 682
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 659
effective length of database: 17,143,297,704
effective search space: 11297433186936
effective search space used: 11297433186936
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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