ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd26a04 |
|---|---|
| Clone Library Name | barley_pub |
>YCAI_ECOLI (P37443) Hypothetical protein ycaI| Length = 754 Score = 31.6 bits (70), Expect = 2.1 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 2/41 (4%) Frame = +2 Query: 371 IWRSS*ARMSHHQSCFSSDAMLW--LPMKLNWRLRPSNDAG 487 +W S HHQ C +A W L +W L+ SND G Sbjct: 576 LWIRSPLNWEHHQPCVRGEAWQWQGLRFSAHWPLQGSNDKG 616
>FBXL2_MOUSE (Q8BH16) F-box/LRR-repeat protein 2 (F-box and leucine-rich repeat| protein 2) Length = 423 Score = 31.2 bits (69), Expect = 2.7 Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 3/50 (6%) Frame = -2 Query: 636 ELAELDLSNC-MVSDYGVAVLASAE--RLKLRVLSLSGCLKVTPKSVPFL 496 +L L LS+C +++D G+ L+S+ +LRVL L CL VT S+ L Sbjct: 313 KLQALSLSHCELITDEGILHLSSSTCGHERLRVLELDNCLLVTDASLEHL 362 Score = 31.2 bits (69), Expect = 2.7 Identities = 19/59 (32%), Positives = 28/59 (47%) Frame = -2 Query: 636 ELAELDLSNCMVSDYGVAVLASAERLKLRVLSLSGCLKVTPKSVPFLGSMPASLEGLNL 460 EL ++DL C++ V S KL+ LSLS C +T + + L S E L + Sbjct: 287 ELEKMDLEECVLITDSTLVQLSIHCPKLQALSLSHCELITDEGILHLSSSTCGHERLRV 345
>WRK16_ARATH (Q9FL92) Probable WRKY transcription factor 16 (WRKY DNA-binding| protein 16) Length = 1372 Score = 31.2 bits (69), Expect = 2.7 Identities = 18/40 (45%), Positives = 27/40 (67%) Frame = -2 Query: 576 ASAERLKLRVLSLSGCLKVTPKSVPFLGSMPASLEGLNLQ 457 A+ + L LRV++LSGC ++ KS P +P ++E LNLQ Sbjct: 633 ATGQLLHLRVVNLSGCTEI--KSFP---EIPPNIETLNLQ 667
>RINI_MOUSE (Q91VI7) Ribonuclease inhibitor (Ribonuclease/angiogenin inhibitor| 1) Length = 456 Score = 31.2 bits (69), Expect = 2.7 Identities = 31/101 (30%), Positives = 45/101 (44%), Gaps = 17/101 (16%) Frame = -2 Query: 639 SELAELDLSNCMVSDYGVAVLA-----SAERLKLRVLSLSGCLKVTPKSVPFLGSMPASL 475 ++ EL LSN + + GV +L SA +L+ L G K + + + ASL Sbjct: 165 ADFKELVLSNNDLHEPGVRILCQGLKDSACQLESLKLENCGITAANCKDLCDVVASKASL 224 Query: 474 EGLNLQFNFIGNHNIASL------------EKQLWWCDILA 388 + L+L N +GN IA+L LW CDI A Sbjct: 225 QELDLSSNKLGNAGIAALCPGLLLPSCKLRTLWLWECDITA 265
>NLK_MOUSE (O54949) Serine/threonine kinase NLK (EC 2.7.11.24) (Nemo-like| kinase) Length = 515 Score = 30.8 bits (68), Expect = 3.6 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 1/67 (1%) Frame = +1 Query: 304 QPMNPTLL*SLTEEVLPTVVYLHLEILLSKDVAPPELLL-Q*CNVVVADEVELEIEALQR 480 QP++ + ++L + YLH +L +D+ P LL+ C + + D +E L Sbjct: 222 QPLSSDHVKVFLYQILRGLKYLHSAGILHRDIKPGNLLVNSNCVLKICDFGLARVEELDE 281 Query: 481 CRHASQE 501 RH +QE Sbjct: 282 SRHMTQE 288
>NLK_HUMAN (Q9UBE8) Serine/threonine kinase NLK (EC 2.7.11.24) (Nemo-like| kinase) (LAK1 protein) Length = 515 Score = 30.8 bits (68), Expect = 3.6 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 1/67 (1%) Frame = +1 Query: 304 QPMNPTLL*SLTEEVLPTVVYLHLEILLSKDVAPPELLL-Q*CNVVVADEVELEIEALQR 480 QP++ + ++L + YLH +L +D+ P LL+ C + + D +E L Sbjct: 222 QPLSSDHVKVFLYQILRGLKYLHSAGILHRDIKPGNLLVNSNCVLKICDFGLARVEELDE 281 Query: 481 CRHASQE 501 RH +QE Sbjct: 282 SRHMTQE 288
>ESAG8_TRYBB (P23799) Putative adenylate cyclase regulatory protein (Leucine| repeat protein) (VSG expression site-associated protein F14.9) Length = 630 Score = 30.8 bits (68), Expect = 3.6 Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 2/75 (2%) Frame = -2 Query: 639 SELAELDLSNCMVSDYGVAVLASAERLKLRVLSLSGCLKVTPKSVPFLGSMP--ASLEGL 466 S L ELD+S C+V G AV+ + L+VLS+S C K+ L + +LE L Sbjct: 301 SNLRELDISGCLV--LGSAVVLK-NLINLKVLSVSNC-----KNFKDLNGLERLVNLEKL 352 Query: 465 NLQFNFIGNHNIASL 421 NL G H ++SL Sbjct: 353 NLS----GCHGVSSL 363
>FBXL7_HUMAN (Q9UJT9) F-box/LRR-repeat protein 7 (F-box and leucine-rich repeat| protein 7) (F-box protein FBL6/FBL7) Length = 491 Score = 30.8 bits (68), Expect = 3.6 Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 1/62 (1%) Frame = -2 Query: 639 SELAELDLSNC-MVSDYGVAVLASAERLKLRVLSLSGCLKVTPKSVPFLGSMPASLEGLN 463 ++L LD+ C +VSD G+ LA L+ LSL C +T + + + + L+ LN Sbjct: 402 TKLKSLDIGKCPLVSDTGLECLA-LNCFNLKRLSLKSCESITGQGLQIVAANCFDLQTLN 460 Query: 462 LQ 457 +Q Sbjct: 461 VQ 462
>LRC8B_MOUSE (Q5DU41) Leucine-rich repeat-containing protein 8B| Length = 791 Score = 30.4 bits (67), Expect = 4.6 Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 1/65 (1%) Frame = -2 Query: 567 ERLKLRVLSLSGCLKVTPKSVPFLGSMPASLEGL-NLQFNFIGNHNIASLEKQLWWCDIL 391 E + + L CLK+ ++ ++ PA + L NL+ F+G++NI SL QL+ C L Sbjct: 613 EIISFQHLPSLSCLKLWHNNIAYI---PAQIGALSNLEQLFLGHNNIESLPLQLFLCTKL 669 Query: 390 A*EDL 376 DL Sbjct: 670 HYLDL 674
>WRK52_ARATH (Q9FH83) Probable WRKY transcription factor 52 (WRKY DNA-binding| protein 52) (Disease resistance protein RRS1) (Resistance to Ralstonia solanacearum 1 protein) (Disease resistance protein SLH1) (SENSITIVE TO LOW HUMIDITY 1 protein) Length = 1288 Score = 30.4 bits (67), Expect = 4.6 Identities = 18/40 (45%), Positives = 28/40 (70%) Frame = -2 Query: 576 ASAERLKLRVLSLSGCLKVTPKSVPFLGSMPASLEGLNLQ 457 A+ L+LRV++LSGC+K+ KSV +P ++E L+LQ Sbjct: 640 AAGRLLRLRVVNLSGCIKI--KSVL---EIPPNIEKLHLQ 674
>FXL16_RAT (Q5MJ12) F-box/LRR-repeat protein 16 (F-box and leucine-rich repeat| protein 16) (Spinal cord injury and regeneration-related protein 1) Length = 479 Score = 30.0 bits (66), Expect = 6.1 Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 1/59 (1%) Frame = -2 Query: 633 LAELDLSNCM-VSDYGVAVLASAERLKLRVLSLSGCLKVTPKSVPFLGSMPASLEGLNL 460 L L LS C V+D GV ++A R KLR L LS C ++T ++ ++ LE L L Sbjct: 322 LTSLSLSGCSKVTDDGVELVAENLR-KLRSLDLSWCPRITDMALEYVACDLHRLEELVL 379
>FXL20_MOUSE (Q9CZV8) F-box/LRR-repeat protein 20 (F-box and leucine-rich repeat| protein 20) (F-box/LRR-repeat protein 2-like) Length = 436 Score = 30.0 bits (66), Expect = 6.1 Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 10/97 (10%) Frame = -2 Query: 633 LAELDLSNCM-VSDYGVAVLASAERLKLRVLSLSGCLKVTPKSVPFLGSMPASLEGLNL- 460 L +L L C+ V D + A R + VLSL+GC K T + L + L L+L Sbjct: 93 LRKLSLRGCLGVGDNALRTFAQNCR-NIEVLSLNGCTKTTDATCTSLSKFCSKLRHLDLA 151 Query: 459 QFNFIGNHNIASLEK--------QLWWCDILA*EDLQ 373 I N ++ +L + + WCD + + +Q Sbjct: 152 SCTSITNMSLKALSEGCPLLEQLNISWCDQVTKDGIQ 188 Score = 29.6 bits (65), Expect = 7.9 Identities = 16/49 (32%), Positives = 25/49 (51%) Frame = -2 Query: 636 ELAELDLSNCMVSDYGVAVLASAERLKLRVLSLSGCLKVTPKSVPFLGS 490 EL ++DL C+ + S +L+VLSLS C +T + LG+ Sbjct: 300 ELEKMDLEECVQITDSTLIQLSIHCPRLQVLSLSHCELITDDGIRHLGN 348
>TFE2_HUMAN (P15923) Transcription factor E2-alpha (Immunoglobulin| enhancer-binding factor E12/E47) (Transcription factor 3) (TCF-3) (Immunoglobulin transcription factor 1) (Transcription factor ITF-1) (Kappa-E2-binding factor) Length = 654 Score = 30.0 bits (66), Expect = 6.1 Identities = 20/69 (28%), Positives = 28/69 (40%) Frame = -1 Query: 580 VGIRGAAQAPCPLTVRLSQGHTEERSIPGKHACIVGGPQSPVQLHRQPQHCITGEAALVV 401 VG G P L+ G T S+ G+HA +VGG P+ + G +L+ Sbjct: 409 VGTAGDMHTLLPGHGALASGFTGPMSLGGRHAGLVGG--------SHPEDGLAGSTSLMH 460 Query: 400 RHPCLRGSP 374 H L P Sbjct: 461 NHAALPSQP 469
>FXL20_RAT (Q9QZH7) F-box/LRR-repeat protein 20 (F-box and leucine-rich repeat| protein 20) (F-box/LRR-repeat protein 2-like) Length = 276 Score = 30.0 bits (66), Expect = 6.1 Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 10/97 (10%) Frame = -2 Query: 633 LAELDLSNCM-VSDYGVAVLASAERLKLRVLSLSGCLKVTPKSVPFLGSMPASLEGLNL- 460 L +L L C+ V D + A R + VLSL+GC K T + L + L L+L Sbjct: 93 LRKLSLRGCLGVGDNALRTFAQNCR-NIEVLSLNGCTKTTDATCTSLSKFCSKLRHLDLA 151 Query: 459 QFNFIGNHNIASLEK--------QLWWCDILA*EDLQ 373 I N ++ +L + + WCD + + +Q Sbjct: 152 SCTSITNMSLKALSEGCPLLEQLNISWCDQVTKDGIQ 188
>FXL13_MOUSE (Q8CDU4) F-box/LRR-repeat protein 13 (F-box and leucine-rich repeat| protein 13) Length = 790 Score = 30.0 bits (66), Expect = 6.1 Identities = 17/60 (28%), Positives = 32/60 (53%) Frame = -2 Query: 633 LAELDLSNCMVSDYGVAVLASAERLKLRVLSLSGCLKVTPKSVPFLGSMPASLEGLNLQF 454 L +DLS ++S+ G+ +L+ KLR +S+S C+ +T + LE L++ + Sbjct: 583 LISVDLSGTLISNEGMTILS--RHRKLREVSVSDCVNITDFGIRAYCKTSLLLEHLDVSY 640
>EOMES_XENLA (P79944) Eomesodermin| Length = 692 Score = 30.0 bits (66), Expect = 6.1 Identities = 19/51 (37%), Positives = 23/51 (45%) Frame = +2 Query: 488 MLPRNGTLFGVTLRQPDSERTRSLSRSADANTATP*SLTMQFERSSSASSE 640 ML G F V PD+ R S S + NTA P S + S A+SE Sbjct: 97 MLSETGEGFSVAKTLPDNVRKGSPSAEEELNTAVPTSAPRYLDGSLQAASE 147
>CDC2_MAIZE (P23111) Cell division control protein 2 homolog (EC 2.7.11.22) (EC| 2.7.11.23) (p34cdc2) Length = 294 Score = 30.0 bits (66), Expect = 6.1 Identities = 14/36 (38%), Positives = 21/36 (58%) Frame = +1 Query: 313 NPTLL*SLTEEVLPTVVYLHLEILLSKDVAPPELLL 420 NPTL+ S ++L V Y H +L +D+ P LL+ Sbjct: 100 NPTLIKSYLYQILHGVAYCHSHRVLHRDLKPQNLLI 135
>CDC21_ORYSA (P29618) Cell division control protein 2 homolog 1 (EC 2.7.11.22)| Length = 294 Score = 30.0 bits (66), Expect = 6.1 Identities = 14/36 (38%), Positives = 21/36 (58%) Frame = +1 Query: 313 NPTLL*SLTEEVLPTVVYLHLEILLSKDVAPPELLL 420 NPTL+ S ++L V Y H +L +D+ P LL+ Sbjct: 100 NPTLIKSYLYQILRGVAYCHSHRVLHRDLKPQNLLI 135
>CCH1_YEAST (P50077) Probable calcium-channel protein| Length = 2039 Score = 30.0 bits (66), Expect = 6.1 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 6/65 (9%) Frame = +1 Query: 349 LPTVVYLHLEILLSKDVAPPELL-LQ*CNVVVADEVELEIEALQRC-----RHASQEWNA 510 L V+YLH+ +LLS+ P L+ Q + + V L EAL C + Q+WN+ Sbjct: 1536 LQVVLYLHIIMLLSRSYNPGNLIGYQGVYFMFSTSVFLIQEALHMCGEGPRLYFRQKWNS 1595 Query: 511 LRCDL 525 +R + Sbjct: 1596 IRLSI 1600
>FXL16_HUMAN (Q8N461) F-box/LRR-repeat protein 16 (F-box and leucine-rich repeat| protein 16) Length = 479 Score = 29.6 bits (65), Expect = 7.9 Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 1/59 (1%) Frame = -2 Query: 633 LAELDLSNCM-VSDYGVAVLASAERLKLRVLSLSGCLKVTPKSVPFLGSMPASLEGLNL 460 L L LS C V+D GV ++A R KLR L LS C ++T ++ ++ LE L L Sbjct: 322 LTALSLSGCSKVTDDGVELVAENLR-KLRSLDLSWCPRITDMALEYVACDLHRLEELVL 379
>VMD2_MOUSE (O88870) Bestrophin-1 (Vitelliform macular dystrophy protein 2| homolog) Length = 551 Score = 29.6 bits (65), Expect = 7.9 Identities = 30/127 (23%), Positives = 52/127 (40%), Gaps = 6/127 (4%) Frame = -3 Query: 401 ATSLLKRISRCKYTTVGSTSSVKLHSRVGFIGCAFESWWASFV----LGSVVFRGTL*PS 234 +TS+ KR + + + H ++ +G ++W +V L + G Sbjct: 144 STSVYKRFPTLHHLVLAGFMTHGEHKQLQKLGLPHNTFWVPWVWFANLSMKAYLGGRIRD 203 Query: 233 ARFLQASSREVACSLSLRLP--LAWHPVPLPPTYALVITVPTPCFFFSLLIKFCVGAQIL 60 LQ+ EV C+L + A+ + +P Y V+TV FF + LI G Q L Sbjct: 204 TVLLQSLMNEV-CTLRTQCGQLYAYDWISIPLVYTQVVTVAVYSFFLACLI----GKQFL 258 Query: 59 SVVSSFP 39 + +P Sbjct: 259 NPNKDYP 265
>FXL20_HUMAN (Q96IG2) F-box/LRR-repeat protein 20 (F-box and leucine-rich repeat| protein 20) (F-box/LRR-repeat protein 2-like) Length = 436 Score = 29.6 bits (65), Expect = 7.9 Identities = 16/49 (32%), Positives = 25/49 (51%) Frame = -2 Query: 636 ELAELDLSNCMVSDYGVAVLASAERLKLRVLSLSGCLKVTPKSVPFLGS 490 EL ++DL C+ + S +L+VLSLS C +T + LG+ Sbjct: 300 ELEKMDLEECVQITDSTLIQLSIHCPRLQVLSLSHCELITDDGIRHLGN 348
>ESA8C_TRYEQ (P26337) Putative adenylate cyclase regulatory protein| Length = 630 Score = 29.6 bits (65), Expect = 7.9 Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 2/75 (2%) Frame = -2 Query: 639 SELAELDLSNCMVSDYGVAVLASAERLKLRVLSLSGCLKVTPKSVPFLGSMP--ASLEGL 466 S L ELD+S C+V G AV+ + L+VLS+S C K+ L + +L+ L Sbjct: 301 SNLRELDISGCLV--LGSAVVLK-NLINLKVLSVSNC-----KNFKDLNGLERLVNLDKL 352 Query: 465 NLQFNFIGNHNIASL 421 NL G H ++SL Sbjct: 353 NLS----GCHGVSSL 363 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 95,250,426 Number of Sequences: 219361 Number of extensions: 2046316 Number of successful extensions: 6069 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 5758 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6064 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5995743495 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
