Clone Information

BLAST Search Result

Clone Name	rbasd26a04
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	dbj\|AP008212.1\| Oryza sativa (japonica cultivar-group) genomic D...	272	1e-69
2	dbj\|AP005446.3\| Oryza sativa (japonica cultivar-group) genomic D...	272	1e-69
3	dbj\|AP003629.3\| Oryza sativa (japonica cultivar-group) genomic D...	272	1e-69
4	dbj\|AK065140.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	272	1e-69
5	dbj\|AK061949.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	264	3e-67
6	ref\|XM_464514.1\| Oryza sativa (japonica cultivar-group), mRNA	90	1e-14
7	ref\|XM_464515.1\| Oryza sativa (japonica cultivar-group), mRNA	90	1e-14
8	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	90	1e-14
9	dbj\|AP004869.3\| Oryza sativa (japonica cultivar-group) genomic D...	90	1e-14
10	dbj\|AK067705.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	90	1e-14
11	dbj\|AK062067.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	90	1e-14
12	dbj\|AK065056.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	88	4e-14
13	dbj\|AK061400.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	88	4e-14
14	dbj\|AK064800.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	82	3e-12
15	gb\|AC068058.12\| Homo sapiens chromosome 10 clone RP11-285A18, co...	46	0.14
16	emb\|CR790363.24\| Zebrafish DNA sequence from clone DKEY-175D9 in...	44	0.56
17	emb\|AL589873.11\| Mouse DNA sequence from clone RP23-120P1 on chr...	44	0.56
18	gb\|AC158915.4\| Mus musculus chromosome 8, clone RP23-146N20, com...	42	2.2
19	gb\|AC121140.7\| Mus musculus chromosome 8, clone RP23-429G12, com...	42	2.2
20	ref\|NM_189428.1\| Oryza sativa (japonica cultivar-group), predic...	40	8.7
21	gb\|AY023298.1\| Oryza sativa microsatellite MRG5623 containing (G...	40	8.7
22	gb\|CP000094.1\| Pseudomonas fluorescens PfO-1, complete genome	40	8.7
23	gb\|CP000075.1\| Pseudomonas syringae pv. syringae B728a, complete...	40	8.7
24	gb\|CP000058.1\| Pseudomonas syringae pv. phaseolicola 1448A, comp...	40	8.7
25	gb\|AC125782.2\| Oryza sativa (japonica cultivar-group) chromosome...	40	8.7
26	emb\|AL445263.6\| Human DNA sequence from clone RP11-227B14 on chr...	40	8.7
27	emb\|AL137059.20\| Human DNA sequence from clone RP11-125I23 on ch...	40	8.7
28	gb\|AC145349.1\| Oryza sativa (japonica cultivar-group) chromosome...	40	8.7
29	gb\|AC092697.6\| Oryza sativa chromosome 10 BAC OSJNBb0060I05 geno...	40	8.7
30	gb\|AC069421.9\| Homo sapiens 3 BAC RP11-528A4 (Roswell Park Cance...	40	8.7
31	dbj\|AP008217.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	8.7
32	dbj\|AP008216.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	8.7
33	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	8.7
34	dbj\|AP003448.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	8.7
35	dbj\|AK105751.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	8.7
36	dbj\|AK071789.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	8.7
37	dbj\|AK070544.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	8.7
38	emb\|AL591664.6\| Zebrafish DNA sequence from clone BUSM1-48O22 in...	40	8.7
39	emb\|BX088709.6\| Zebrafish DNA sequence from clone CH211-15J21 in...	40	8.7
40	gb\|AY106292.1\| Zea mays PCO061640 mRNA sequence	40	8.7
41	emb\|CR376732.12\| Zebrafish DNA sequence from clone DKEY-146H23 i...	40	8.7
42	gb\|AE016959.3\| Oryza sativa (japonica cultivar-group) chromosome...	40	8.7
43	gb\|DP000010.1\| Oryza sativa (japonica cultivar-group) chromosome...	40	8.7

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  272 bits (137), Expect = 1e-69
 Identities = 224/253 (88%)
 Strand = Plus / Minus

                                                                            
Query: 386      taagcaaggatgtcgcaccaccagagctgcttctccagtgatgcaatgttgtggttgccg 445
                |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| 
Sbjct: 23652349 taagcaaggatgtcgcaccaccagagctgcttctccagcgatgcaatgttgtggttgcca 23652290

                                                                            
Query: 446      atgaagttgaactggagattgaggccctccaacgatgcaggcatgcttcccaggaatgga 505
                |||||||||||||||||||||||||||||||||||||| | |||||| || | ||| |||
Sbjct: 23652289 atgaagttgaactggagattgaggccctccaacgatgccgacatgctgcctaagaaagga 23652230

                                                                            
Query: 506      acgctcttcggtgtgaccttgagacagccggacagtgagaggacacggagcttgagccgc 565
                || |||||| | || ||||| | ||| || || |||||||||||||| || |||||| ||
Sbjct: 23652229 acactcttctgggtaaccttcaaacaaccagaaagtgagaggacacgaagtttgagctgc 23652170

                                                                            
Query: 566      tccgcggatgccaacaccgcaacaccatagtcgctgaccatgcagtttgaaagatcaagc 625
                  ||| || |||||||| |||||||| ||||||||||||||||||||||| |||||||| 
Sbjct: 23652169 ctcgctgacgccaacactgcaacaccgtagtcgctgaccatgcagtttgagagatcaagt 23652110

                             
Query: 626      tcggcgagctcgg 638
                |||||||| ||||
Sbjct: 23652109 tcggcgagatcgg 23652097



 Score =  145 bits (73), Expect = 2e-31
 Identities = 125/141 (88%), Gaps = 1/141 (0%)
 Strand = Plus / Minus

                                                                            
Query: 160      gggtgccacgctaatggcagccgaaggctcaaggaacaggcaacctcgcgagaggaggcc 219
                ||||||||||||||||||||||||||||||||||||||||||   || | ||||||  ||
Sbjct: 23652618 gggtgccacgctaatggcagccgaaggctcaaggaacaggcactatcccaagaggatacc 23652559

                                                                            
Query: 220      tgcaaaaaacgagcacttggct-aaagcgtcccccggaaaacaaccgaccctaagacaaa 278
                ||||||||||||||||| |||| |||  | ||||||||||||||||| | ||||||| ||
Sbjct: 23652558 tgcaaaaaacgagcactcggctaaaaatgccccccggaaaacaaccggctctaagacgaa 23652499

                                     
Query: 279      ggaagcccaccatgactcaaa 299
                ||||| |||||||||||||||
Sbjct: 23652498 ggaagtccaccatgactcaaa 23652478



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 51/57 (89%), Gaps = 5/57 (8%)
 Strand = Plus / Minus

                                                                         
Query: 329      gaagcttgactga---agaagtactac--ctacggtcgtatatttgcatctggagat 380
                |||||||||||||   || ||||||||  ||||||||||||||||||||||||||||
Sbjct: 23652445 gaagcttgactgaagtaggagtactaccgctacggtcgtatatttgcatctggagat 23652389

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>dbj|AP005446.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6,
           PAC clone:P0029C06
          Length = 156500

 Score =  272 bits (137), Expect = 1e-69
 Identities = 224/253 (88%)
 Strand = Plus / Minus

                                                                       
Query: 386 taagcaaggatgtcgcaccaccagagctgcttctccagtgatgcaatgttgtggttgccg 445
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| 
Sbjct: 425 taagcaaggatgtcgcaccaccagagctgcttctccagcgatgcaatgttgtggttgcca 366

                                                                       
Query: 446 atgaagttgaactggagattgaggccctccaacgatgcaggcatgcttcccaggaatgga 505
           |||||||||||||||||||||||||||||||||||||| | |||||| || | ||| |||
Sbjct: 365 atgaagttgaactggagattgaggccctccaacgatgccgacatgctgcctaagaaagga 306

                                                                       
Query: 506 acgctcttcggtgtgaccttgagacagccggacagtgagaggacacggagcttgagccgc 565
           || |||||| | || ||||| | ||| || || |||||||||||||| || |||||| ||
Sbjct: 305 acactcttctgggtaaccttcaaacaaccagaaagtgagaggacacgaagtttgagctgc 246

                                                                       
Query: 566 tccgcggatgccaacaccgcaacaccatagtcgctgaccatgcagtttgaaagatcaagc 625
             ||| || |||||||| |||||||| ||||||||||||||||||||||| |||||||| 
Sbjct: 245 ctcgctgacgccaacactgcaacaccgtagtcgctgaccatgcagtttgagagatcaagt 186

                        
Query: 626 tcggcgagctcgg 638
           |||||||| ||||
Sbjct: 185 tcggcgagatcgg 173



 Score =  145 bits (73), Expect = 2e-31
 Identities = 125/141 (88%), Gaps = 1/141 (0%)
 Strand = Plus / Minus

                                                                       
Query: 160 gggtgccacgctaatggcagccgaaggctcaaggaacaggcaacctcgcgagaggaggcc 219
           ||||||||||||||||||||||||||||||||||||||||||   || | ||||||  ||
Sbjct: 694 gggtgccacgctaatggcagccgaaggctcaaggaacaggcactatcccaagaggatacc 635

                                                                       
Query: 220 tgcaaaaaacgagcacttggct-aaagcgtcccccggaaaacaaccgaccctaagacaaa 278
           ||||||||||||||||| |||| |||  | ||||||||||||||||| | ||||||| ||
Sbjct: 634 tgcaaaaaacgagcactcggctaaaaatgccccccggaaaacaaccggctctaagacgaa 575

                                
Query: 279 ggaagcccaccatgactcaaa 299
           ||||| |||||||||||||||
Sbjct: 574 ggaagtccaccatgactcaaa 554



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 51/57 (89%), Gaps = 5/57 (8%)
 Strand = Plus / Minus

                                                                    
Query: 329 gaagcttgactga---agaagtactac--ctacggtcgtatatttgcatctggagat 380
           |||||||||||||   || ||||||||  ||||||||||||||||||||||||||||
Sbjct: 521 gaagcttgactgaagtaggagtactaccgctacggtcgtatatttgcatctggagat 465

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>dbj|AP003629.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0481H08
          Length = 146841

 Score =  272 bits (137), Expect = 1e-69
 Identities = 224/253 (88%)
 Strand = Plus / Minus

                                                                          
Query: 386    taagcaaggatgtcgcaccaccagagctgcttctccagtgatgcaatgttgtggttgccg 445
              |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| 
Sbjct: 133313 taagcaaggatgtcgcaccaccagagctgcttctccagcgatgcaatgttgtggttgcca 133254

                                                                          
Query: 446    atgaagttgaactggagattgaggccctccaacgatgcaggcatgcttcccaggaatgga 505
              |||||||||||||||||||||||||||||||||||||| | |||||| || | ||| |||
Sbjct: 133253 atgaagttgaactggagattgaggccctccaacgatgccgacatgctgcctaagaaagga 133194

                                                                          
Query: 506    acgctcttcggtgtgaccttgagacagccggacagtgagaggacacggagcttgagccgc 565
              || |||||| | || ||||| | ||| || || |||||||||||||| || |||||| ||
Sbjct: 133193 acactcttctgggtaaccttcaaacaaccagaaagtgagaggacacgaagtttgagctgc 133134

                                                                          
Query: 566    tccgcggatgccaacaccgcaacaccatagtcgctgaccatgcagtttgaaagatcaagc 625
                ||| || |||||||| |||||||| ||||||||||||||||||||||| |||||||| 
Sbjct: 133133 ctcgctgacgccaacactgcaacaccgtagtcgctgaccatgcagtttgagagatcaagt 133074

                           
Query: 626    tcggcgagctcgg 638
              |||||||| ||||
Sbjct: 133073 tcggcgagatcgg 133061



 Score =  145 bits (73), Expect = 2e-31
 Identities = 125/141 (88%), Gaps = 1/141 (0%)
 Strand = Plus / Minus

                                                                          
Query: 160    gggtgccacgctaatggcagccgaaggctcaaggaacaggcaacctcgcgagaggaggcc 219
              ||||||||||||||||||||||||||||||||||||||||||   || | ||||||  ||
Sbjct: 133582 gggtgccacgctaatggcagccgaaggctcaaggaacaggcactatcccaagaggatacc 133523

                                                                          
Query: 220    tgcaaaaaacgagcacttggct-aaagcgtcccccggaaaacaaccgaccctaagacaaa 278
              ||||||||||||||||| |||| |||  | ||||||||||||||||| | ||||||| ||
Sbjct: 133522 tgcaaaaaacgagcactcggctaaaaatgccccccggaaaacaaccggctctaagacgaa 133463

                                   
Query: 279    ggaagcccaccatgactcaaa 299
              ||||| |||||||||||||||
Sbjct: 133462 ggaagtccaccatgactcaaa 133442



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 51/57 (89%), Gaps = 5/57 (8%)
 Strand = Plus / Minus

                                                                       
Query: 329    gaagcttgactga---agaagtactac--ctacggtcgtatatttgcatctggagat 380
              |||||||||||||   || ||||||||  ||||||||||||||||||||||||||||
Sbjct: 133409 gaagcttgactgaagtaggagtactaccgctacggtcgtatatttgcatctggagat 133353

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>dbj|AK065140.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002A13, full
            insert sequence
          Length = 2793

 Score =  272 bits (137), Expect = 1e-69
 Identities = 224/253 (88%)
 Strand = Plus / Minus

                                                                        
Query: 386  taagcaaggatgtcgcaccaccagagctgcttctccagtgatgcaatgttgtggttgccg 445
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| 
Sbjct: 2005 taagcaaggatgtcgcaccaccagagctgcttctccagcgatgcaatgttgtggttgcca 1946

                                                                        
Query: 446  atgaagttgaactggagattgaggccctccaacgatgcaggcatgcttcccaggaatgga 505
            |||||||||||||||||||||||||||||||||||||| | |||||| || | ||| |||
Sbjct: 1945 atgaagttgaactggagattgaggccctccaacgatgccgacatgctgcctaagaaagga 1886

                                                                        
Query: 506  acgctcttcggtgtgaccttgagacagccggacagtgagaggacacggagcttgagccgc 565
            || |||||| | || ||||| | ||| || || |||||||||||||| || |||||| ||
Sbjct: 1885 acactcttctgggtaaccttcaaacaaccagaaagtgagaggacacgaagtttgagctgc 1826

                                                                        
Query: 566  tccgcggatgccaacaccgcaacaccatagtcgctgaccatgcagtttgaaagatcaagc 625
              ||| || |||||||| |||||||| ||||||||||||||||||||||| |||||||| 
Sbjct: 1825 ctcgctgacgccaacactgcaacaccgtagtcgctgaccatgcagtttgagagatcaagt 1766

                         
Query: 626  tcggcgagctcgg 638
            |||||||| ||||
Sbjct: 1765 tcggcgagatcgg 1753



 Score =  145 bits (73), Expect = 2e-31
 Identities = 125/141 (88%), Gaps = 1/141 (0%)
 Strand = Plus / Minus

                                                                        
Query: 160  gggtgccacgctaatggcagccgaaggctcaaggaacaggcaacctcgcgagaggaggcc 219
            ||||||||||||||||||||||||||||||||||||||||||   || | ||||||  ||
Sbjct: 2274 gggtgccacgctaatggcagccgaaggctcaaggaacaggcactatcccaagaggatacc 2215

                                                                        
Query: 220  tgcaaaaaacgagcacttggct-aaagcgtcccccggaaaacaaccgaccctaagacaaa 278
            ||||||||||||||||| |||| |||  | ||||||||||||||||| | ||||||| ||
Sbjct: 2214 tgcaaaaaacgagcactcggctaaaaatgccccccggaaaacaaccggctctaagacgaa 2155

                                 
Query: 279  ggaagcccaccatgactcaaa 299
            ||||| |||||||||||||||
Sbjct: 2154 ggaagtccaccatgactcaaa 2134



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 51/57 (89%), Gaps = 5/57 (8%)
 Strand = Plus / Minus

                                                                     
Query: 329  gaagcttgactga---agaagtactac--ctacggtcgtatatttgcatctggagat 380
            |||||||||||||   || ||||||||  ||||||||||||||||||||||||||||
Sbjct: 2101 gaagcttgactgaagtaggagtactaccgctacggtcgtatatttgcatctggagat 2045

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>dbj|AK061949.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-E08, full
           insert sequence
          Length = 1158

 Score =  264 bits (133), Expect = 3e-67
 Identities = 223/253 (88%)
 Strand = Plus / Minus

                                                                       
Query: 386 taagcaaggatgtcgcaccaccagagctgcttctccagtgatgcaatgttgtggttgccg 445
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| 
Sbjct: 370 taagcaaggatgtcgcaccaccagagctgcttctccagcgatgcaatgttgtggttgcca 311

                                                                       
Query: 446 atgaagttgaactggagattgaggccctccaacgatgcaggcatgcttcccaggaatgga 505
           |||||||||||||||||||||||||||||||||||||| | |||||| || | ||| |||
Sbjct: 310 atgaagttgaactggagattgaggccctccaacgatgccgacatgctgcctaagaaagga 251

                                                                       
Query: 506 acgctcttcggtgtgaccttgagacagccggacagtgagaggacacggagcttgagccgc 565
           || |||||| | || ||||| | ||| || || |||||||||||||| || |||||| ||
Sbjct: 250 acactcttctgggtaaccttcaaacaaccagaaagtgagaggacacgaagtttgagctgc 191

                                                                       
Query: 566 tccgcggatgccaacaccgcaacaccatagtcgctgaccatgcagtttgaaagatcaagc 625
             ||| || |||||||| |||||||| ||||||||||||||||||||||| |||||||| 
Sbjct: 190 ctcgctgacgccaacactgcaacaccgtagtcgctgaccatgcagtttgagagatcaagt 131

                        
Query: 626 tcggcgagctcgg 638
            ||||||| ||||
Sbjct: 130 ccggcgagatcgg 118



 Score =  145 bits (73), Expect = 2e-31
 Identities = 125/141 (88%), Gaps = 1/141 (0%)
 Strand = Plus / Minus

                                                                       
Query: 160 gggtgccacgctaatggcagccgaaggctcaaggaacaggcaacctcgcgagaggaggcc 219
           ||||||||||||||||||||||||||||||||||||||||||   || | ||||||  ||
Sbjct: 639 gggtgccacgctaatggcagccgaaggctcaaggaacaggcactatcccaagaggatacc 580

                                                                       
Query: 220 tgcaaaaaacgagcacttggct-aaagcgtcccccggaaaacaaccgaccctaagacaaa 278
           ||||||||||||||||| |||| |||  | ||||||||||||||||| | ||||||| ||
Sbjct: 579 tgcaaaaaacgagcactcggctaaaaatgccccccggaaaacaaccggctctaagacgaa 520

                                
Query: 279 ggaagcccaccatgactcaaa 299
           ||||| |||||||||||||||
Sbjct: 519 ggaagtccaccatgactcaaa 499



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 51/57 (89%), Gaps = 5/57 (8%)
 Strand = Plus / Minus

                                                                    
Query: 329 gaagcttgactga---agaagtactac--ctacggtcgtatatttgcatctggagat 380
           |||||||||||||   || ||||||||  ||||||||||||||||||||||||||||
Sbjct: 466 gaagcttgactgaagtaggagtactaccgctacggtcgtatatttgcatctggagat 410

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>ref|XM_464514.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2525

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 201/247 (81%), Gaps = 7/247 (2%)
 Strand = Plus / Minus

                                                                        
Query: 395  atgtcgcaccaccagagctgcttctccagtgatgcaatgttgtggttgccgatgaagtt- 453
            ||||||||||||||||||||||||||||| ||||||||||||||||| || || | ||| 
Sbjct: 1724 atgtcgcaccaccagagctgcttctccagcgatgcaatgttgtggttaccaatcatgttg 1665

                                                                        
Query: 454  --gaactggagattgaggccctccaacga-tgcaggcatgcttcccaggaatggaacgct 510
              |||||| |||||||| |||||||| || |||   |||| | |||| |||||  |||||
Sbjct: 1664 cagaactgaagattgagaccctccaaagactgc-cccatgttgcccaagaatgacacgct 1606

                                                                        
Query: 511  cttcggtgtgacctt-gagacagccggacagtgagaggacacggagcttgagccgctccg 569
            |||||| || ||||| ||| || || |||||||| |||||||| ||||||||  |||  |
Sbjct: 1605 cttcggagtaaccttcgag-caaccagacagtgacaggacacgaagcttgaggtgctttg 1547

                                                                        
Query: 570  cggatgccaacaccgcaacaccatagtcgctgaccatgcagtttgaaagatcaagctcgg 629
            | |||||||     |||||||||| ||| ||||||||||| || || ||||| ||||| |
Sbjct: 1546 ctgatgccagggtagcaacaccattgtcactgaccatgcacttggacagatcgagctcag 1487

                   
Query: 630  cgagctc 636
            | |||||
Sbjct: 1486 caagctc 1480



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 172  aatggcagccgaaggctcaa 191
            ||||||||||||||||||||
Sbjct: 1991 aatggcagccgaaggctcaa 1972

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>ref|XM_464515.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2981

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 201/247 (81%), Gaps = 7/247 (2%)
 Strand = Plus / Minus

                                                                        
Query: 395  atgtcgcaccaccagagctgcttctccagtgatgcaatgttgtggttgccgatgaagtt- 453
            ||||||||||||||||||||||||||||| ||||||||||||||||| || || | ||| 
Sbjct: 2180 atgtcgcaccaccagagctgcttctccagcgatgcaatgttgtggttaccaatcatgttg 2121

                                                                        
Query: 454  --gaactggagattgaggccctccaacga-tgcaggcatgcttcccaggaatggaacgct 510
              |||||| |||||||| |||||||| || |||   |||| | |||| |||||  |||||
Sbjct: 2120 cagaactgaagattgagaccctccaaagactgc-cccatgttgcccaagaatgacacgct 2062

                                                                        
Query: 511  cttcggtgtgacctt-gagacagccggacagtgagaggacacggagcttgagccgctccg 569
            |||||| || ||||| ||| || || |||||||| |||||||| ||||||||  |||  |
Sbjct: 2061 cttcggagtaaccttcgag-caaccagacagtgacaggacacgaagcttgaggtgctttg 2003

                                                                        
Query: 570  cggatgccaacaccgcaacaccatagtcgctgaccatgcagtttgaaagatcaagctcgg 629
            | |||||||     |||||||||| ||| ||||||||||| || || ||||| ||||| |
Sbjct: 2002 ctgatgccagggtagcaacaccattgtcactgaccatgcacttggacagatcgagctcag 1943

                   
Query: 630  cgagctc 636
            | |||||
Sbjct: 1942 caagctc 1936



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 172  aatggcagccgaaggctcaa 191
            ||||||||||||||||||||
Sbjct: 2447 aatggcagccgaaggctcaa 2428

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 201/247 (81%), Gaps = 7/247 (2%)
 Strand = Plus / Plus

                                                                           
Query: 395     atgtcgcaccaccagagctgcttctccagtgatgcaatgttgtggttgccgatgaagtt- 453
               ||||||||||||||||||||||||||||| ||||||||||||||||| || || | ||| 
Sbjct: 5628923 atgtcgcaccaccagagctgcttctccagcgatgcaatgttgtggttaccaatcatgttg 5628982

                                                                           
Query: 454     --gaactggagattgaggccctccaacga-tgcaggcatgcttcccaggaatggaacgct 510
                 |||||| |||||||| |||||||| || |||   |||| | |||| |||||  |||||
Sbjct: 5628983 cagaactgaagattgagaccctccaaagactgc-cccatgttgcccaagaatgacacgct 5629041

                                                                           
Query: 511     cttcggtgtgacctt-gagacagccggacagtgagaggacacggagcttgagccgctccg 569
               |||||| || ||||| ||| || || |||||||| |||||||| ||||||||  |||  |
Sbjct: 5629042 cttcggagtaaccttcgag-caaccagacagtgacaggacacgaagcttgaggtgctttg 5629100

                                                                           
Query: 570     cggatgccaacaccgcaacaccatagtcgctgaccatgcagtttgaaagatcaagctcgg 629
               | |||||||     |||||||||| ||| ||||||||||| || || ||||| ||||| |
Sbjct: 5629101 ctgatgccagggtagcaacaccattgtcactgaccatgcacttggacagatcgagctcag 5629160

                      
Query: 630     cgagctc 636
               | |||||
Sbjct: 5629161 caagctc 5629167



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 172     aatggcagccgaaggctcaa 191
               ||||||||||||||||||||
Sbjct: 5628656 aatggcagccgaaggctcaa 5628675

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>dbj|AP004869.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0419A09
          Length = 168064

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 201/247 (81%), Gaps = 7/247 (2%)
 Strand = Plus / Plus

                                                                         
Query: 395   atgtcgcaccaccagagctgcttctccagtgatgcaatgttgtggttgccgatgaagtt- 453
             ||||||||||||||||||||||||||||| ||||||||||||||||| || || | ||| 
Sbjct: 56659 atgtcgcaccaccagagctgcttctccagcgatgcaatgttgtggttaccaatcatgttg 56718

                                                                         
Query: 454   --gaactggagattgaggccctccaacga-tgcaggcatgcttcccaggaatggaacgct 510
               |||||| |||||||| |||||||| || |||   |||| | |||| |||||  |||||
Sbjct: 56719 cagaactgaagattgagaccctccaaagactgc-cccatgttgcccaagaatgacacgct 56777

                                                                         
Query: 511   cttcggtgtgacctt-gagacagccggacagtgagaggacacggagcttgagccgctccg 569
             |||||| || ||||| ||| || || |||||||| |||||||| ||||||||  |||  |
Sbjct: 56778 cttcggagtaaccttcgag-caaccagacagtgacaggacacgaagcttgaggtgctttg 56836

                                                                         
Query: 570   cggatgccaacaccgcaacaccatagtcgctgaccatgcagtttgaaagatcaagctcgg 629
             | |||||||     |||||||||| ||| ||||||||||| || || ||||| ||||| |
Sbjct: 56837 ctgatgccagggtagcaacaccattgtcactgaccatgcacttggacagatcgagctcag 56896

                    
Query: 630   cgagctc 636
             | |||||
Sbjct: 56897 caagctc 56903



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 172   aatggcagccgaaggctcaa 191
             ||||||||||||||||||||
Sbjct: 56392 aatggcagccgaaggctcaa 56411

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>dbj|AK067705.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116M10, full
            insert sequence
          Length = 2525

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 201/247 (81%), Gaps = 7/247 (2%)
 Strand = Plus / Minus

                                                                        
Query: 395  atgtcgcaccaccagagctgcttctccagtgatgcaatgttgtggttgccgatgaagtt- 453
            ||||||||||||||||||||||||||||| ||||||||||||||||| || || | ||| 
Sbjct: 1724 atgtcgcaccaccagagctgcttctccagcgatgcaatgttgtggttaccaatcatgttg 1665

                                                                        
Query: 454  --gaactggagattgaggccctccaacga-tgcaggcatgcttcccaggaatggaacgct 510
              |||||| |||||||| |||||||| || |||   |||| | |||| |||||  |||||
Sbjct: 1664 cagaactgaagattgagaccctccaaagactgc-cccatgttgcccaagaatgacacgct 1606

                                                                        
Query: 511  cttcggtgtgacctt-gagacagccggacagtgagaggacacggagcttgagccgctccg 569
            |||||| || ||||| ||| || || |||||||| |||||||| ||||||||  |||  |
Sbjct: 1605 cttcggagtaaccttcgag-caaccagacagtgacaggacacgaagcttgaggtgctttg 1547

                                                                        
Query: 570  cggatgccaacaccgcaacaccatagtcgctgaccatgcagtttgaaagatcaagctcgg 629
            | |||||||     |||||||||| ||| ||||||||||| || || ||||| ||||| |
Sbjct: 1546 ctgatgccagggtagcaacaccattgtcactgaccatgcacttggacagatcgagctcag 1487

                   
Query: 630  cgagctc 636
            | |||||
Sbjct: 1486 caagctc 1480



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 172  aatggcagccgaaggctcaa 191
            ||||||||||||||||||||
Sbjct: 1991 aatggcagccgaaggctcaa 1972

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>dbj|AK062067.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-044-D11, full
           insert sequence
          Length = 1713

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 201/247 (81%), Gaps = 7/247 (2%)
 Strand = Plus / Minus

                                                                       
Query: 395 atgtcgcaccaccagagctgcttctccagtgatgcaatgttgtggttgccgatgaagtt- 453
           ||||||||||||||||||||||||||||| ||||||||||||||||| || || | ||| 
Sbjct: 912 atgtcgcaccaccagagctgcttctccagcgatgcaatgttgtggttaccaatcatgttg 853

                                                                       
Query: 454 --gaactggagattgaggccctccaacga-tgcaggcatgcttcccaggaatggaacgct 510
             |||||| |||||||| |||||||| || |||   |||| | |||| |||||  |||||
Sbjct: 852 cagaactgaagattgagaccctccaaagactgc-cccatgttgcccaagaatgacacgct 794

                                                                       
Query: 511 cttcggtgtgacctt-gagacagccggacagtgagaggacacggagcttgagccgctccg 569
           |||||| || ||||| ||| || || |||||||| |||||||| ||||||||  |||  |
Sbjct: 793 cttcggagtaaccttcgag-caaccagacagtgacaggacacgaagcttgaggtgctttg 735

                                                                       
Query: 570 cggatgccaacaccgcaacaccatagtcgctgaccatgcagtttgaaagatcaagctcgg 629
           | |||||||     |||||||||| ||| ||||||||||| || || ||||| ||||| |
Sbjct: 734 ctgatgccagggtagcaacaccattgtcactgaccatgcacttggacagatcgagctcag 675

                  
Query: 630 cgagctc 636
           | |||||
Sbjct: 674 caagctc 668



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 172  aatggcagccgaaggctcaa 191
            ||||||||||||||||||||
Sbjct: 1179 aatggcagccgaaggctcaa 1160

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>dbj|AK065056.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001J06, full
            insert sequence
          Length = 6528

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 76/86 (88%), Gaps = 3/86 (3%)
 Strand = Plus / Minus

                                                                        
Query: 395  atgtcgcaccaccagagctgcttctccagtgatgcaatgttgtggttgccgatgaagtt- 453
            ||||||||||||||||||||||||||||| ||||||||||||||||| || || | ||| 
Sbjct: 2175 atgtcgcaccaccagagctgcttctccagcgatgcaatgttgtggttaccaatcatgttg 2116

                                      
Query: 454  --gaactggagattgaggccctccaa 477
              |||||| |||||||| ||||||||
Sbjct: 2115 cagaactgaagattgagaccctccaa 2090



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 172  aatggcagccgaaggctcaa 191
            ||||||||||||||||||||
Sbjct: 2442 aatggcagccgaaggctcaa 2423

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>dbj|AK061400.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-305-G02, full
           insert sequence
          Length = 998

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 76/86 (88%), Gaps = 3/86 (3%)
 Strand = Plus / Minus

                                                                       
Query: 395 atgtcgcaccaccagagctgcttctccagtgatgcaatgttgtggttgccgatgaagtt- 453
           ||||||||||||||||||||||||||||| ||||||||||||||||| || || | ||| 
Sbjct: 197 atgtcgcaccaccagagctgcttctccagcgatgcaatgttgtggttaccaatcatgttg 138

                                     
Query: 454 --gaactggagattgaggccctccaa 477
             |||||| |||||||| ||||||||
Sbjct: 137 cagaactgaagattgagaccctccaa 112



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 172 aatggcagccgaaggctcaa 191
           ||||||||||||||||||||
Sbjct: 464 aatggcagccgaaggctcaa 445

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>dbj|AK064800.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000D06, full
            insert sequence
          Length = 2981

 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 200/247 (80%), Gaps = 7/247 (2%)
 Strand = Plus / Minus

                                                                        
Query: 395  atgtcgcaccaccagagctgcttctccagtgatgcaatgttgtggttgccgatgaagtt- 453
            |||||| |||||||||||||||||||||| ||||||||||||||||| || || | ||| 
Sbjct: 2180 atgtcgtaccaccagagctgcttctccagcgatgcaatgttgtggttaccaatcatgttg 2121

                                                                        
Query: 454  --gaactggagattgaggccctccaacga-tgcaggcatgcttcccaggaatggaacgct 510
              |||||| |||||||| |||||||| || |||   |||| | |||| |||||  |||||
Sbjct: 2120 cagaactgaagattgagaccctccaaagactgc-cccatgttgcccaagaatgacacgct 2062

                                                                        
Query: 511  cttcggtgtgacctt-gagacagccggacagtgagaggacacggagcttgagccgctccg 569
            |||||| || ||||| ||| || || |||||||| |||||||| ||||||||  |||  |
Sbjct: 2061 cttcggagtaaccttcgag-caaccagacagtgacaggacacgaagcttgaggtgctttg 2003

                                                                        
Query: 570  cggatgccaacaccgcaacaccatagtcgctgaccatgcagtttgaaagatcaagctcgg 629
            | |||||||     |||||||||| ||| ||||||||||| || || ||||| ||||| |
Sbjct: 2002 ctgatgccagggtagcaacaccattgtcactgaccatgcacttggacagatcgagctcag 1943

                   
Query: 630  cgagctc 636
            | |||||
Sbjct: 1942 caagctc 1936



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 172  aatggcagccgaaggctcaa 191
            ||||||||||||||||||||
Sbjct: 2447 aatggcagccgaaggctcaa 2428

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>gb|AC068058.12| Homo sapiens chromosome 10 clone RP11-285A18, complete sequence
          Length = 168862

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 407   cagagctgcttctccagtgatgc 429
             |||||||||||||||||||||||
Sbjct: 71118 cagagctgcttctccagtgatgc 71140

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>emb|CR790363.24| Zebrafish DNA sequence from clone DKEY-175D9 in linkage group 3,
             complete sequence
          Length = 139765

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 420   ccagtgatgcaatgttgtggtt 441
             ||||||||||||||||||||||
Sbjct: 97344 ccagtgatgcaatgttgtggtt 97365

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>emb|AL589873.11| Mouse DNA sequence from clone RP23-120P1 on chromosome 2, complete
             sequence
          Length = 170936

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 140   aggttgggggtagagggacagg 161
             ||||||||||||||||||||||
Sbjct: 41230 aggttgggggtagagggacagg 41209

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>gb|AC158915.4| Mus musculus chromosome 8, clone RP23-146N20, complete sequence
          Length = 207367

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 408   agagctgcttctccagtgatg 428
             |||||||||||||||||||||
Sbjct: 58211 agagctgcttctccagtgatg 58231

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>gb|AC121140.7| Mus musculus chromosome 8, clone RP23-429G12, complete sequence
          Length = 201440

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 408   agagctgcttctccagtgatg 428
             |||||||||||||||||||||
Sbjct: 11280 agagctgcttctccagtgatg 11300

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>ref|NM_189428.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1026

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 433 gttgtggttgccgatgaagt 452
           ||||||||||||||||||||
Sbjct: 453 gttgtggttgccgatgaagt 434

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>gb|AY023298.1| Oryza sativa microsatellite MRG5623 containing (GGT)X8, closest to
           marker G376, genomic sequence
          Length = 224

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 198 ggcaacctcgcgagaggagg 217
           ||||||||||||||||||||
Sbjct: 163 ggcaacctcgcgagaggagg 144

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>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome
          Length = 6438405

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 438     ggttgccgatgaagttgaac 457
               ||||||||||||||||||||
Sbjct: 4663949 ggttgccgatgaagttgaac 4663968

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>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome
          Length = 6093698

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 438     ggttgccgatgaagttgaac 457
               ||||||||||||||||||||
Sbjct: 2311749 ggttgccgatgaagttgaac 2311730

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>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome
          Length = 5928787

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 438     ggttgccgatgaagttgaac 457
               ||||||||||||||||||||
Sbjct: 2307611 ggttgccgatgaagttgaac 2307592

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>gb|AC125782.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
              OSJNBa0095P22, complete sequence
          Length = 162766

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 198    ggcaacctcgcgagaggagg 217
              ||||||||||||||||||||
Sbjct: 138573 ggcaacctcgcgagaggagg 138554

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>emb|AL445263.6| Human DNA sequence from clone RP11-227B14 on chromosome 1, complete
            sequence
          Length = 58522

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 210  agaggaggcctgcaaaaaacgagc 233
            |||||||||||| |||||||||||
Sbjct: 1471 agaggaggcctggaaaaaacgagc 1448

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>emb|AL137059.20| Human DNA sequence from clone RP11-125I23 on chromosome 13 Contains the
              MTIF3 gene for mitochondrial translational initiation
              factor 3, the GTF3A gene for general transcription factor
              IIIA (AP2, TFIIIA) and two CpG islands, complete sequence
          Length = 166141

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 272    agacaaaggaagcccaccat 291
              ||||||||||||||||||||
Sbjct: 156336 agacaaaggaagcccaccat 156317

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>gb|AC145349.1| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0096I10, complete sequence
          Length = 171946

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 198   ggcaacctcgcgagaggagg 217
             ||||||||||||||||||||
Sbjct: 71525 ggcaacctcgcgagaggagg 71544

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>gb|AC092697.6| Oryza sativa chromosome 10 BAC OSJNBb0060I05 genomic sequence, complete
             sequence
          Length = 105841

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 39    tggaaaagaagacacaactgacaa 62
             |||||||||||||| |||||||||
Sbjct: 63312 tggaaaagaagacaaaactgacaa 63289

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>gb|AC069421.9| Homo sapiens 3 BAC RP11-528A4 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 157289

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 327    atgaagcttgactgaagaag 346
              ||||||||||||||||||||
Sbjct: 123885 atgaagcttgactgaagaag 123866

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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 198      ggcaacctcgcgagaggagg 217
                ||||||||||||||||||||
Sbjct: 24337464 ggcaacctcgcgagaggagg 24337445

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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 39       tggaaaagaagacacaactgacaa 62
                |||||||||||||| |||||||||
Sbjct: 20347810 tggaaaagaagacaaaactgacaa 20347787

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 433      gttgtggttgccgatgaagt 452
                ||||||||||||||||||||
Sbjct: 42703717 gttgtggttgccgatgaagt 42703698

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>dbj|AP003448.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OJ1656_A11
          Length = 148887

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 433   gttgtggttgccgatgaagt 452
             ||||||||||||||||||||
Sbjct: 36482 gttgtggttgccgatgaagt 36463

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>dbj|AK105751.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-B11, full
           insert sequence
          Length = 2313

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 198 ggcaacctcgcgagaggagg 217
           ||||||||||||||||||||
Sbjct: 164 ggcaacctcgcgagaggagg 145

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>dbj|AK071789.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023110H14, full
           insert sequence
          Length = 1006

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 198 ggcaacctcgcgagaggagg 217
           ||||||||||||||||||||
Sbjct: 70  ggcaacctcgcgagaggagg 51

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>dbj|AK070544.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023056G11, full
           insert sequence
          Length = 2315

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 198 ggcaacctcgcgagaggagg 217
           ||||||||||||||||||||
Sbjct: 158 ggcaacctcgcgagaggagg 139

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>emb|AL591664.6| Zebrafish DNA sequence from clone BUSM1-48O22 in linkage group 3,
             complete sequence
          Length = 69669

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 487   catgcttcccaggaatggaa 506
             ||||||||||||||||||||
Sbjct: 38164 catgcttcccaggaatggaa 38145

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>emb|BX088709.6| Zebrafish DNA sequence from clone CH211-15J21 in linkage group 15,
             complete sequence
          Length = 156236

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 34    tgtactggaaaagaagacacaact 57
             ||||||||||||||||||| ||||
Sbjct: 24820 tgtactggaaaagaagacaaaact 24797

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>gb|AY106292.1| Zea mays PCO061640 mRNA sequence
          Length = 1384

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 532 gccggacagtgagaggacacggag 555
           |||||| |||||||||||||||||
Sbjct: 176 gccggagagtgagaggacacggag 153

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>emb|CR376732.12| Zebrafish DNA sequence from clone DKEY-146H23 in linkage group 3,
              complete sequence
          Length = 171210

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 487    catgcttcccaggaatggaa 506
              ||||||||||||||||||||
Sbjct: 146334 catgcttcccaggaatggaa 146353

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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 39       tggaaaagaagacacaactgacaa 62
                |||||||||||||| |||||||||
Sbjct: 20359082 tggaaaagaagacaaaactgacaa 20359059

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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 198      ggcaacctcgcgagaggagg 217
                ||||||||||||||||||||
Sbjct: 24649133 ggcaacctcgcgagaggagg 24649114


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,346,923
Number of Sequences: 3902068
Number of extensions: 4346923
Number of successful extensions: 75787
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 75453
Number of HSP's gapped (non-prelim): 324
length of query: 640
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 617
effective length of database: 17,143,297,704
effective search space: 10577414683368
effective search space used: 10577414683368
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result