ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd25l01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY228552.1| Hordeum vulgare agmatine coumaroyltransferase (AC... 668 0.0
2gb|AY234333.1| Triticum aestivum putative agmatine coumaroyltran... 468 e-129
3ref|XM_474243.1| Oryza sativa (japonica cultivar-group), predic... 365 7e-98
4emb|AL606646.3|OSJN00091 Oryza sativa genomic DNA, chromosome 4,... 365 7e-98
5dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 365 7e-98
6dbj|AK109743.1| Oryza sativa (japonica cultivar-group) cDNA clon... 365 7e-98
7ref|XM_474244.1| Oryza sativa (japonica cultivar-group), predic... 307 1e-80
8gb|AC078977.6| Oryza sativa (japonica cultivar-group) chromosome... 48 0.021
9dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.021
10ref|XM_450191.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.081
11ref|XM_469315.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.081
12gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 46 0.081
13gb|AC087412.14| Oryza sativa chromosome 3 BAC OSJNBb0070O09 geno... 46 0.081
14dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.081
15dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.081
16dbj|AP006548.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.081
17emb|CR974447.12| Mouse DNA sequence from clone RP23-452G2 on chr... 42 1.3
18gb|AC132598.3| Mus musculus BAC clone RP24-196M16 from chromosom... 42 1.3
19emb|AL365215.23| Human DNA sequence from clone RP11-416D8 on chr... 42 1.3
20emb|BX027057.1|CNS08T1H Single read from an extremity of a full-... 42 1.3
21emb|BX284752.1|NCB23B10 Neurospora crassa DNA linkage group II B... 42 1.3
22ref|XM_315590.2| Anopheles gambiae str. PEST ENSANGP00000017720 ... 42 1.3
23emb|AL359352.21| Mouse DNA sequence from clone CT7-350K7 on chro... 42 1.3
24gb|AF025467.1| Caenorhabditis elegans cosmid R148, complete sequ... 40 5.0
25gb|AY577002.1| Danio rerio clone RZ150A4A11 C22orf4-like protein... 40 5.0
26gb|AC183772.2| Pan troglodytes BAC clone CH251-73E21 from chromo... 40 5.0
27emb|AJ231133.1|SOF231133 Saccharum officinarum mRNA for caffeic ... 40 5.0
28gb|AY365419.1| Saccharum hybrid cultivar caffeic acid 3-O-methyl... 40 5.0
29emb|BX664615.10| Human DNA sequence from clone RP11-104G3 on chr... 40 5.0
30emb|CR769767.5| Human DNA sequence from clone RP11-204M4 on chro... 40 5.0
31emb|CR788307.3| Human DNA sequence from clone RP11-384N15 on chr... 40 5.0
32ref|NM_181961.1| Caenorhabditis elegans R148.5b (R148.5) mRNA, c... 40 5.0
33ref|NM_065264.3| Caenorhabditis elegans R148.5a (R148.5) mRNA, c... 40 5.0
34ref|NM_214799.1| Danio rerio zgc:101677 (zgc:101677), mRNA 40 5.0
35dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.0
36dbj|AP004329.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.0
37dbj|AP003634.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.0
38dbj|AP003169.2| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 5.0
39dbj|AP005436.1| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 5.0
40dbj|AP003385.2| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 5.0

>gb|AY228552.1| Hordeum vulgare agmatine coumaroyltransferase (ACT) mRNA, complete
            cds
          Length = 1508

 Score =  668 bits (337), Expect = 0.0
 Identities = 371/377 (98%), Gaps = 4/377 (1%)
 Strand = Plus / Minus

                                                                        
Query: 1    ttccaaaacagcaatggtataattgaatcaaggaacttcaaaaatagcaactaggcaagt 60
            ||||||||||| ||||| |||||||||||||| |||||||||||||  ||||||||||||
Sbjct: 1444 ttccaaaacag-aatgg-ataattgaatcaag-aacttcaaaaataa-aactaggcaagt 1389

                                                                        
Query: 61   ggctaacgttgatccgacaccaggcacacattggcacatggcaggtacgtgcaaacggga 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1388 ggctaacgttgatccgacaccaggcacacattggcacatggcaggtacgtgcaaacggga 1329

                                                                        
Query: 121  cctagtcgaggctgtagcagcagttcttgaaggtgttcatgtcgcggctaaagagtggca 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1328 cctagtcgaggctgtagcagcagttcttgaaggtgttcatgtcgcggctaaagagtggca 1269

                                                                        
Query: 181  cgtaggcgtccacgctgccgtcgcccaagaaagacggcagcaggatgagcagaccctcca 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1268 cgtaggcgtccacgctgccgtcgcccaagaaagacggcagcaggatgagcagaccctcca 1209

                                                                        
Query: 241  ccggcaggtagctgggcatgaagaagaatggccgcccgccgccgaagtccatgtcgtaga 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1208 ccggcaggtagctgggcatgaagaagaatggccgcccgccgccgaagtccatgtcgtaga 1149

                                                                        
Query: 301  acgggatccgcagccagctgtccacctcgatgttggggctcagcaccatgtccgccgcgt 360
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1148 acgggatcagcagccagctgtccacctcgatgttggggctcagcaccatgtccgccgcgt 1089

                             
Query: 361  cggccgtcgccaccagc 377
            |||||||||||||||||
Sbjct: 1088 cggccgtcgccaccagc 1072



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>gb|AY234333.1| Triticum aestivum putative agmatine coumaroyltransferase mRNA,
            partial cds
          Length = 1220

 Score =  468 bits (236), Expect = e-129
 Identities = 295/312 (94%), Gaps = 2/312 (0%)
 Strand = Plus / Minus

                                                                        
Query: 66   acgttgatccgacaccaggcacacattggcacatggcaggtacgtgcaaacgggacctag 125
            |||| |||||||||||| ||||||||| |||| |||||||||||| ||| ||| | ||||
Sbjct: 1116 acgtcgatccgacaccacgcacacatttgcacttggcaggtacgt-caagcgg-agctag 1059

                                                                        
Query: 126  tcgaggctgtagcagcagttcttgaaggtgttcatgtcgcggctaaagagtggcacgtag 185
            |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1058 tcgagggtgtagcagcagttcttgaaagtgttcatgtcgcggctaaagagtggcacgtag 999

                                                                        
Query: 186  gcgtccacgctgccgtcgcccaagaaagacggcagcaggatgagcagaccctccaccggc 245
            ||| |||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||
Sbjct: 998  gcgcccacgctgccgtcgcccaagaaggacggtagcaggatgagcaggccctccaccggc 939

                                                                        
Query: 246  aggtagctgggcatgaagaagaatggccgcccgccgccgaagtccatgtcgtagaacggg 305
            ||||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||
Sbjct: 938  aggtagctgggcatgaagaagaagggccggccgccgccgaggtccatgtcgtagaacggg 879

                                                                        
Query: 306  atccgcagccagctgtccacctcgatgttggggctcagcaccatgtccgccgcgtcggcc 365
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 878  atccgcagccagctgtccacctcgatgttggggctcagcaccatgtccgccgcgtcggcc 819

                        
Query: 366  gtcgccaccagc 377
            ||||||||||||
Sbjct: 818  gtcgccaccagc 807



 Score = 48.1 bits (24), Expect = 0.021
 Identities = 38/40 (95%), Gaps = 2/40 (5%)
 Strand = Plus / Minus

                                                    
Query: 21   aattgaatcaaggaacttcaaaaatagcaactaggcaagt 60
            |||||||||||| ||||||||||||| |||||||||||||
Sbjct: 1188 aattgaatcaag-aacttcaaaaata-caactaggcaagt 1151



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>ref|XM_474243.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1293

 Score =  365 bits (184), Expect = 7e-98
 Identities = 229/244 (93%)
 Strand = Plus / Minus

                                                                        
Query: 134  gtagcagcagttcttgaaggtgttcatgtcgcggctaaagagtggcacgtaggcgtccac 193
            |||||||||||||||||||  || |||||||||||| |||||||||||||| ||||| ||
Sbjct: 1257 gtagcagcagttcttgaagacgtccatgtcgcggctgaagagtggcacgtacgcgtcaac 1198

                                                                        
Query: 194  gctgccgtcgcccaagaaagacggcagcaggatgagcagaccctccaccggcaggtagct 253
            ||| |||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 1197 gctcccgtcgccgaagaaagacggcagcaggatgagcaaaccttccaccggcaggtagct 1138

                                                                        
Query: 254  gggcatgaagaagaatggccgcccgccgccgaagtccatgtcgtagaacgggatccgcag 313
            |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 1137 gggcatgaagaagaatggccgcccgccgccgaagtcgaggtcgtagaacgggatccgcag 1078

                                                                        
Query: 314  ccagctgtccacctcgatgttggggctcagcaccatgtccgccgcgtcggccgtcgccac 373
            ||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||
Sbjct: 1077 ccagctgtccacctcgatgttcgggctcagcaccatctccgccgcgtcggccgacgccac 1018

                
Query: 374  cagc 377
            ||||
Sbjct: 1017 cagc 1014



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>emb|AL606646.3|OSJN00091 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0087O24,
             complete sequence
          Length = 146168

 Score =  365 bits (184), Expect = 7e-98
 Identities = 229/244 (93%)
 Strand = Plus / Minus

                                                                         
Query: 134   gtagcagcagttcttgaaggtgttcatgtcgcggctaaagagtggcacgtaggcgtccac 193
             |||||||||||||||||||  || |||||||||||| |||||||||||||| ||||| ||
Sbjct: 11597 gtagcagcagttcttgaagacgtccatgtcgcggctgaagagtggcacgtacgcgtcaac 11538

                                                                         
Query: 194   gctgccgtcgcccaagaaagacggcagcaggatgagcagaccctccaccggcaggtagct 253
             ||| |||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 11537 gctcccgtcgccgaagaaagacggcagcaggatgagcaaaccttccaccggcaggtagct 11478

                                                                         
Query: 254   gggcatgaagaagaatggccgcccgccgccgaagtccatgtcgtagaacgggatccgcag 313
             |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 11477 gggcatgaagaagaatggccgcccgccgccgaagtcgaggtcgtagaacgggatccgcag 11418

                                                                         
Query: 314   ccagctgtccacctcgatgttggggctcagcaccatgtccgccgcgtcggccgtcgccac 373
             ||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||
Sbjct: 11417 ccagctgtccacctcgatgttcgggctcagcaccatctccgccgcgtcggccgacgccac 11358

                 
Query: 374   cagc 377
             ||||
Sbjct: 11357 cagc 11354



 Score =  307 bits (155), Expect = 1e-80
 Identities = 221/243 (90%)
 Strand = Plus / Plus

                                                                         
Query: 135   tagcagcagttcttgaaggtgttcatgtcgcggctaaagagtggcacgtaggcgtccacg 194
             |||||||||||||||||||||| ||||||| |||| |||||||||||||||||||| |||
Sbjct: 13909 tagcagcagttcttgaaggtgtccatgtcgtggctgaagagtggcacgtaggcgtcgacg 13968

                                                                         
Query: 195   ctgccgtcgcccaagaaagacggcagcaggatgagcagaccctccaccggcaggtagctg 254
             |||||||||||  ||||||| ||||| |||||||| ||||||||||||||||||||||| 
Sbjct: 13969 ctgccgtcgccggagaaagatggcaggaggatgagaagaccctccaccggcaggtagcta 14028

                                                                         
Query: 255   ggcatgaagaagaatggccgcccgccgccgaagtccatgtcgtagaacgggatccgcagc 314
             ||| |||| | ||||||| | |||| ||||||||| |  |||||||||||||||||||||
Sbjct: 14029 ggcgtgaacaggaatggctggccgctgccgaagtcaagctcgtagaacgggatccgcagc 14088

                                                                         
Query: 315   cagctgtccacctcgatgttggggctcagcaccatgtccgccgcgtcggccgtcgccacc 374
             |||||||||||||||||||| |||||||||||||| |||||||||||||||| |||||||
Sbjct: 14089 cagctgtccacctcgatgttcgggctcagcaccatctccgccgcgtcggccgacgccacc 14148

                
Query: 375   agc 377
             |||
Sbjct: 14149 agc 14151



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  365 bits (184), Expect = 7e-98
 Identities = 229/244 (93%)
 Strand = Plus / Minus

                                                                            
Query: 134      gtagcagcagttcttgaaggtgttcatgtcgcggctaaagagtggcacgtaggcgtccac 193
                |||||||||||||||||||  || |||||||||||| |||||||||||||| ||||| ||
Sbjct: 33960700 gtagcagcagttcttgaagacgtccatgtcgcggctgaagagtggcacgtacgcgtcaac 33960641

                                                                            
Query: 194      gctgccgtcgcccaagaaagacggcagcaggatgagcagaccctccaccggcaggtagct 253
                ||| |||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 33960640 gctcccgtcgccgaagaaagacggcagcaggatgagcaaaccttccaccggcaggtagct 33960581

                                                                            
Query: 254      gggcatgaagaagaatggccgcccgccgccgaagtccatgtcgtagaacgggatccgcag 313
                |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 33960580 gggcatgaagaagaatggccgcccgccgccgaagtcgaggtcgtagaacgggatccgcag 33960521

                                                                            
Query: 314      ccagctgtccacctcgatgttggggctcagcaccatgtccgccgcgtcggccgtcgccac 373
                ||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||
Sbjct: 33960520 ccagctgtccacctcgatgttcgggctcagcaccatctccgccgcgtcggccgacgccac 33960461

                    
Query: 374      cagc 377
                ||||
Sbjct: 33960460 cagc 33960457



 Score =  307 bits (155), Expect = 1e-80
 Identities = 221/243 (90%)
 Strand = Plus / Plus

                                                                            
Query: 135      tagcagcagttcttgaaggtgttcatgtcgcggctaaagagtggcacgtaggcgtccacg 194
                |||||||||||||||||||||| ||||||| |||| |||||||||||||||||||| |||
Sbjct: 33963012 tagcagcagttcttgaaggtgtccatgtcgtggctgaagagtggcacgtaggcgtcgacg 33963071

                                                                            
Query: 195      ctgccgtcgcccaagaaagacggcagcaggatgagcagaccctccaccggcaggtagctg 254
                |||||||||||  ||||||| ||||| |||||||| ||||||||||||||||||||||| 
Sbjct: 33963072 ctgccgtcgccggagaaagatggcaggaggatgagaagaccctccaccggcaggtagcta 33963131

                                                                            
Query: 255      ggcatgaagaagaatggccgcccgccgccgaagtccatgtcgtagaacgggatccgcagc 314
                ||| |||| | ||||||| | |||| ||||||||| |  |||||||||||||||||||||
Sbjct: 33963132 ggcgtgaacaggaatggctggccgctgccgaagtcaagctcgtagaacgggatccgcagc 33963191

                                                                            
Query: 315      cagctgtccacctcgatgttggggctcagcaccatgtccgccgcgtcggccgtcgccacc 374
                |||||||||||||||||||| |||||||||||||| |||||||||||||||| |||||||
Sbjct: 33963192 cagctgtccacctcgatgttcgggctcagcaccatctccgccgcgtcggccgacgccacc 33963251

                   
Query: 375      agc 377
                |||
Sbjct: 33963252 agc 33963254



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>dbj|AK109743.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-146-E07, full
            insert sequence
          Length = 1640

 Score =  365 bits (184), Expect = 7e-98
 Identities = 229/244 (93%)
 Strand = Plus / Minus

                                                                        
Query: 134  gtagcagcagttcttgaaggtgttcatgtcgcggctaaagagtggcacgtaggcgtccac 193
            |||||||||||||||||||  || |||||||||||| |||||||||||||| ||||| ||
Sbjct: 1411 gtagcagcagttcttgaagacgtccatgtcgcggctgaagagtggcacgtacgcgtcaac 1352

                                                                        
Query: 194  gctgccgtcgcccaagaaagacggcagcaggatgagcagaccctccaccggcaggtagct 253
            ||| |||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 1351 gctcccgtcgccgaagaaagacggcagcaggatgagcaaaccttccaccggcaggtagct 1292

                                                                        
Query: 254  gggcatgaagaagaatggccgcccgccgccgaagtccatgtcgtagaacgggatccgcag 313
            |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 1291 gggcatgaagaagaatggccgcccgccgccgaagtcgaggtcgtagaacgggatccgcag 1232

                                                                        
Query: 314  ccagctgtccacctcgatgttggggctcagcaccatgtccgccgcgtcggccgtcgccac 373
            ||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||
Sbjct: 1231 ccagctgtccacctcgatgttcgggctcagcaccatctccgccgcgtcggccgacgccac 1172

                
Query: 374  cagc 377
            ||||
Sbjct: 1171 cagc 1168



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>ref|XM_474244.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1350

 Score =  307 bits (155), Expect = 1e-80
 Identities = 221/243 (90%)
 Strand = Plus / Minus

                                                                        
Query: 135  tagcagcagttcttgaaggtgttcatgtcgcggctaaagagtggcacgtaggcgtccacg 194
            |||||||||||||||||||||| ||||||| |||| |||||||||||||||||||| |||
Sbjct: 1328 tagcagcagttcttgaaggtgtccatgtcgtggctgaagagtggcacgtaggcgtcgacg 1269

                                                                        
Query: 195  ctgccgtcgcccaagaaagacggcagcaggatgagcagaccctccaccggcaggtagctg 254
            |||||||||||  ||||||| ||||| |||||||| ||||||||||||||||||||||| 
Sbjct: 1268 ctgccgtcgccggagaaagatggcaggaggatgagaagaccctccaccggcaggtagcta 1209

                                                                        
Query: 255  ggcatgaagaagaatggccgcccgccgccgaagtccatgtcgtagaacgggatccgcagc 314
            ||| |||| | ||||||| | |||| ||||||||| |  |||||||||||||||||||||
Sbjct: 1208 ggcgtgaacaggaatggctggccgctgccgaagtcaagctcgtagaacgggatccgcagc 1149

                                                                        
Query: 315  cagctgtccacctcgatgttggggctcagcaccatgtccgccgcgtcggccgtcgccacc 374
            |||||||||||||||||||| |||||||||||||| |||||||||||||||| |||||||
Sbjct: 1148 cagctgtccacctcgatgttcgggctcagcaccatctccgccgcgtcggccgacgccacc 1089

               
Query: 375  agc 377
            |||
Sbjct: 1088 agc 1086



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>gb|AC078977.6| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0496H07,
             complete sequence
          Length = 164477

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 60/72 (83%)
 Strand = Plus / Plus

                                                                         
Query: 276   ccgccgccgaagtccatgtcgtagaacgggatccgcagccagctgtccacctcgatgttg 335
             |||||||||||||| |  ||||||||   ||| | |||||||||||||||||||| ||  
Sbjct: 76714 ccgccgccgaagtcgagctcgtagaagtcgatgcccagccagctgtccacctcgacgtcc 76773

                         
Query: 336   gggctcagcacc 347
             |||| |||||||
Sbjct: 76774 gggcacagcacc 76785



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5,
              complete sequence
          Length = 29737217

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 60/72 (83%)
 Strand = Plus / Plus

                                                                          
Query: 276    ccgccgccgaagtccatgtcgtagaacgggatccgcagccagctgtccacctcgatgttg 335
              |||||||||||||| |  ||||||||   ||| | |||||||||||||||||||| ||  
Sbjct: 872290 ccgccgccgaagtcgagctcgtagaagtcgatgcccagccagctgtccacctcgacgtcc 872349

                          
Query: 336    gggctcagcacc 347
              |||| |||||||
Sbjct: 872350 gggcacagcacc 872361



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>ref|XM_450191.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1359

 Score = 46.1 bits (23), Expect = 0.081
 Identities = 59/71 (83%)
 Strand = Plus / Minus

                                                                        
Query: 276  ccgccgccgaagtccatgtcgtagaacgggatccgcagccagctgtccacctcgatgttg 335
            |||||||||||||| |  |||||||||||||     ||||||||||||||||| | || |
Sbjct: 1205 ccgccgccgaagtcgagctcgtagaacgggaaggtgagccagctgtccacctccaggtcg 1146

                       
Query: 336  gggctcagcac 346
            |||| ||||||
Sbjct: 1145 gggcacagcac 1135



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>ref|XM_469315.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1389

 Score = 46.1 bits (23), Expect = 0.081
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 171  aagagtggcacgtaggcgtccacgctgccgtcgcc 205
            ||||||||||||||| |||| | ||||||||||||
Sbjct: 1340 aagagtggcacgtagacgtcgatgctgccgtcgcc 1306



 Score = 44.1 bits (22), Expect = 0.32
 Identities = 49/58 (84%)
 Strand = Plus / Minus

                                                                      
Query: 276  ccgccgccgaagtccatgtcgtagaacgggatccgcagccagctgtccacctcgatgt 333
            |||||||||||||| | |||||||||    || | |||||||||||||||||| ||||
Sbjct: 1235 ccgccgccgaagtcgaggtcgtagaagctcatgcccagccagctgtccacctccatgt 1178



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 46.1 bits (23), Expect = 0.081
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                   
Query: 171      aagagtggcacgtaggcgtccacgctgccgtcgcc 205
                ||||||||||||||| |||| | ||||||||||||
Sbjct: 26918691 aagagtggcacgtagacgtcgatgctgccgtcgcc 26918657



 Score = 44.1 bits (22), Expect = 0.32
 Identities = 49/58 (84%)
 Strand = Plus / Minus

                                                                          
Query: 276      ccgccgccgaagtccatgtcgtagaacgggatccgcagccagctgtccacctcgatgt 333
                |||||||||||||| | |||||||||    || | |||||||||||||||||| ||||
Sbjct: 26918586 ccgccgccgaagtcgaggtcgtagaagctcatgcccagccagctgtccacctccatgt 26918529



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>gb|AC087412.14| Oryza sativa chromosome 3 BAC OSJNBb0070O09 genomic sequence, complete
             sequence
          Length = 149303

 Score = 46.1 bits (23), Expect = 0.081
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                
Query: 171   aagagtggcacgtaggcgtccacgctgccgtcgcc 205
             ||||||||||||||| |||| | ||||||||||||
Sbjct: 97691 aagagtggcacgtagacgtcgatgctgccgtcgcc 97657



 Score = 44.1 bits (22), Expect = 0.32
 Identities = 49/58 (84%)
 Strand = Plus / Minus

                                                                       
Query: 276   ccgccgccgaagtccatgtcgtagaacgggatccgcagccagctgtccacctcgatgt 333
             |||||||||||||| | |||||||||    || | |||||||||||||||||| ||||
Sbjct: 97586 ccgccgccgaagtcgaggtcgtagaagctcatgcccagccagctgtccacctccatgt 97529



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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 46.1 bits (23), Expect = 0.081
 Identities = 59/71 (83%)
 Strand = Plus / Minus

                                                                            
Query: 276      ccgccgccgaagtccatgtcgtagaacgggatccgcagccagctgtccacctcgatgttg 335
                |||||||||||||| |  |||||||||||||     ||||||||||||||||| | || |
Sbjct: 21163512 ccgccgccgaagtcgagctcgtagaacgggaaggtgagccagctgtccacctccaggtcg 21163453

                           
Query: 336      gggctcagcac 346
                |||| ||||||
Sbjct: 21163452 gggcacagcac 21163442



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 46.1 bits (23), Expect = 0.081
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                   
Query: 171      aagagtggcacgtaggcgtccacgctgccgtcgcc 205
                ||||||||||||||| |||| | ||||||||||||
Sbjct: 27010014 aagagtggcacgtagacgtcgatgctgccgtcgcc 27009980



 Score = 44.1 bits (22), Expect = 0.32
 Identities = 49/58 (84%)
 Strand = Plus / Minus

                                                                          
Query: 276      ccgccgccgaagtccatgtcgtagaacgggatccgcagccagctgtccacctcgatgt 333
                |||||||||||||| | |||||||||    || | |||||||||||||||||| ||||
Sbjct: 27009909 ccgccgccgaagtcgaggtcgtagaagctcatgcccagccagctgtccacctccatgt 27009852



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>dbj|AP006548.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone: P0705E11
          Length = 140729

 Score = 46.1 bits (23), Expect = 0.081
 Identities = 59/71 (83%)
 Strand = Plus / Minus

                                                                         
Query: 276   ccgccgccgaagtccatgtcgtagaacgggatccgcagccagctgtccacctcgatgttg 335
             |||||||||||||| |  |||||||||||||     ||||||||||||||||| | || |
Sbjct: 34269 ccgccgccgaagtcgagctcgtagaacgggaaggtgagccagctgtccacctccaggtcg 34210

                        
Query: 336   gggctcagcac 346
             |||| ||||||
Sbjct: 34209 gggcacagcac 34199



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>emb|CR974447.12| Mouse DNA sequence from clone RP23-452G2 on chromosome 17, complete
             sequence
          Length = 139010

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 11    gcaatggtataattgaatcaaggaa 35
             |||||||||||||| ||||||||||
Sbjct: 51042 gcaatggtataattcaatcaaggaa 51066



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>gb|AC132598.3| Mus musculus BAC clone RP24-196M16 from chromosome 17, complete
            sequence
          Length = 162858

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 11   gcaatggtataattgaatcaaggaa 35
            |||||||||||||| ||||||||||
Sbjct: 8139 gcaatggtataattcaatcaaggaa 8163



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>emb|AL365215.23| Human DNA sequence from clone RP11-416D8 on chromosome 10 Contains the
             5' end of the RSU1 gene for Ras suppressor protein 1, the
             3' end of the CUBN gene for cubilin (intrinsic
             factor-cobalamin receptor) and a CpG island, complete
             sequence
          Length = 184703

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 326   ctcgatgttggggctcagcac 346
             |||||||||||||||||||||
Sbjct: 51790 ctcgatgttggggctcagcac 51810



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>emb|BX027057.1|CNS08T1H Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 3-PRIME end of
           clone FK0AAA40CC11 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 279

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 357 gcgtcggccgtcgccaccagc 377
           |||||||||||||||||||||
Sbjct: 131 gcgtcggccgtcgccaccagc 111



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>emb|BX284752.1|NCB23B10 Neurospora crassa DNA linkage group II BAC contig B23B10
          Length = 99967

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 58    agtggctaacgttgatccgacacca 82
             |||||||||||| ||||||||||||
Sbjct: 33123 agtggctaacgtcgatccgacacca 33147



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>ref|XM_315590.2| Anopheles gambiae str. PEST ENSANGP00000017720
           (ENSANGG00000015231), partial mRNA
          Length = 966

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 357 gcgtcggccgtcgccaccagc 377
           |||||||||||||||||||||
Sbjct: 820 gcgtcggccgtcgccaccagc 840



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>emb|AL359352.21| Mouse DNA sequence from clone CT7-350K7 on chromosome 17, complete
              sequence
          Length = 162935

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 11     gcaatggtataattgaatcaaggaa 35
              |||||||||||||| ||||||||||
Sbjct: 151094 gcaatggtataattcaatcaaggaa 151118



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>gb|AF025467.1| Caenorhabditis elegans cosmid R148, complete sequence
          Length = 37154

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 206  caagaaagacggcagcagga 225
            ||||||||||||||||||||
Sbjct: 2399 caagaaagacggcagcagga 2418



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>gb|AY577002.1| Danio rerio clone RZ150A4A11 C22orf4-like protein mRNA, complete
           cds
          Length = 2068

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 206 caagaaagacggcagcagga 225
           ||||||||||||||||||||
Sbjct: 372 caagaaagacggcagcagga 391



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>gb|AC183772.2| Pan troglodytes BAC clone CH251-73E21 from chromosome 9, complete
              sequence
          Length = 162544

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 15     tggtataattgaatcaagga 34
              ||||||||||||||||||||
Sbjct: 136832 tggtataattgaatcaagga 136813



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>emb|AJ231133.1|SOF231133 Saccharum officinarum mRNA for caffeic acid 3-O-methyltransferase
          Length = 1486

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 344 caccatgtccgccgcgtcgg 363
           ||||||||||||||||||||
Sbjct: 335 caccatgtccgccgcgtcgg 316



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>gb|AY365419.1| Saccharum hybrid cultivar caffeic acid 3-O-methyltransferase (COMT)
           gene, complete cds
          Length = 2012

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 344 caccatgtccgccgcgtcgg 363
           ||||||||||||||||||||
Sbjct: 231 caccatgtccgccgcgtcgg 212



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>emb|BX664615.10| Human DNA sequence from clone RP11-104G3 on chromosome 9 Contains a
              RAB28, member RAS oncogene family pseudogene (RAB28), a
              pseudogene similar to part of recombining binding protein
              suppressor of hairless (Drosophila) (RBPSUH), two novel
              pseudogenes, a pseudogene similar to part of fibroblast
              growth factor 7 (keratinocyte growth factor) (FGF7), the 3'
              end of a novel gene and two CpG islands, complete sequence
          Length = 163837

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 15     tggtataattgaatcaagga 34
              ||||||||||||||||||||
Sbjct: 142428 tggtataattgaatcaagga 142447



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>emb|CR769767.5| Human DNA sequence from clone RP11-204M4 on chromosome 9 Contains the
             5' end of a novel gene, a novel pseudogene and a
             pseudogene similar to part of ribosomal protein L10
             (RPL10), complete sequence
          Length = 153630

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 15    tggtataattgaatcaagga 34
             ||||||||||||||||||||
Sbjct: 20441 tggtataattgaatcaagga 20460



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>emb|CR788307.3| Human DNA sequence from clone RP11-384N15 on chromosome 9, complete
             sequence
          Length = 166827

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 15    tggtataattgaatcaagga 34
             ||||||||||||||||||||
Sbjct: 73091 tggtataattgaatcaagga 73072



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>ref|NM_181961.1| Caenorhabditis elegans R148.5b (R148.5) mRNA, complete cds
          Length = 1518

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 206 caagaaagacggcagcagga 225
           ||||||||||||||||||||
Sbjct: 637 caagaaagacggcagcagga 656



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>ref|NM_065264.3| Caenorhabditis elegans R148.5a (R148.5) mRNA, complete cds
          Length = 1848

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 206 caagaaagacggcagcagga 225
           ||||||||||||||||||||
Sbjct: 637 caagaaagacggcagcagga 656



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>ref|NM_214799.1| Danio rerio zgc:101677 (zgc:101677), mRNA
          Length = 2068

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 206 caagaaagacggcagcagga 225
           ||||||||||||||||||||
Sbjct: 372 caagaaagacggcagcagga 391



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 352      ccgccgcgtcggccgtcgccacca 375
                ||||||||||| ||||||||||||
Sbjct: 29600703 ccgccgcgtcgcccgtcgccacca 29600726



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>dbj|AP004329.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OJ1663_H12
          Length = 125422

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 352   ccgccgcgtcggccgtcgccacca 375
             ||||||||||| ||||||||||||
Sbjct: 44288 ccgccgcgtcgcccgtcgccacca 44311



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>dbj|AP003634.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0655A07
          Length = 172473

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 352    ccgccgcgtcggccgtcgccacca 375
              ||||||||||| ||||||||||||
Sbjct: 165209 ccgccgcgtcgcccgtcgccacca 165232



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>dbj|AP003169.2| Homo sapiens genomic DNA, chromosome 11q clone:RP11-588K15, complete
             sequence
          Length = 113000

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 23    ttgaatcaaggaacttcaaaaata 46
             ||||||||||||| ||||||||||
Sbjct: 75959 ttgaatcaaggaaattcaaaaata 75936



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>dbj|AP005436.1| Homo sapiens genomic DNA, chromosome 11 clone:RP11-164N3, complete
             sequence
          Length = 147520

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 23    ttgaatcaaggaacttcaaaaata 46
             ||||||||||||| ||||||||||
Sbjct: 78125 ttgaatcaaggaaattcaaaaata 78102



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>dbj|AP003385.2| Homo sapiens genomic DNA, chromosome 11q clone:RP11-655M14, complete
             sequences
          Length = 174074

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 82    aggcacacattggcacatgg 101
             ||||||||||||||||||||
Sbjct: 72264 aggcacacattggcacatgg 72245


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,085,860
Number of Sequences: 3902068
Number of extensions: 3085860
Number of successful extensions: 82581
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 82295
Number of HSP's gapped (non-prelim): 279
length of query: 377
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 355
effective length of database: 17,147,199,772
effective search space: 6087255919060
effective search space used: 6087255919060
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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