ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd25k23 |
|---|---|
| Clone Library Name | barley_pub |
>MST2_DROHY (Q08696) Axoneme-associated protein mst101(2)| Length = 1391 Score = 46.2 bits (108), Expect = 8e-05 Identities = 34/154 (22%), Positives = 59/154 (38%), Gaps = 12/154 (7%) Frame = -2 Query: 608 QGNDSCDIKCQHHKVPARKKQCVDECHSREHHHPSRASCERKCSHWRDPARKEQCVQ--- 438 +G C + K A KK+C E +E ++ CE + ++ A K+QC + Sbjct: 963 KGKKKCKKLGKKSKRAAEKKKCA-EAAKKEKEAATKKKCEERAKKQKEAAEKKQCEERAK 1021 Query: 437 ---------QCMRYGLNLXXXXXXXVIERPHAEEVEVDDQSNDSCDHKCQHHKVPARKKQ 285 QC L E + E +Q C+ + + K A KKQ Sbjct: 1022 KLKEAAEQKQCEERAKKLKEAAEKKQCEERAKKLKEAAEQK--QCEERAKKLKEAAEKKQ 1079 Query: 284 CVDECHRREHHHPSRAACERKCSHWRDPTRKERC 183 C +E ++E + CE + ++ K++C Sbjct: 1080 C-EERAKKEKEAAEKKQCEERAKKLKEAAEKKQC 1112 Score = 44.3 bits (103), Expect = 3e-04 Identities = 30/143 (20%), Positives = 56/143 (39%) Frame = -2 Query: 593 CDIKCQHHKVPARKKQCVDECHSREHHHPSRASCERKCSHWRDPARKEQCVQQCMRYGLN 414 C+ + + K A KKQC +E +E + CE + ++ A K+QC ++ + Sbjct: 1064 CEERAKKLKEAAEKKQC-EERAKKEKEAAEKKQCEERAKKLKEAAEKKQCEERAKK---- 1118 Query: 413 LXXXXXXXVIERPHAEEVEVDDQSNDSCDHKCQHHKVPARKKQCVDECHRREHHHPSRAA 234 E+ AE+ C+ + K A KK+C E ++E + Sbjct: 1119 ----------EKEAAEK--------KRCEEAAKREKEAAEKKKCA-EAAKKEKEATEKQK 1159 Query: 233 CERKCSHWRDPTRKERCVQTCMR 165 C ++ K++C + R Sbjct: 1160 CAEAAKKEKEAAEKKKCAEAAKR 1182 Score = 38.9 bits (89), Expect = 0.013 Identities = 28/150 (18%), Positives = 56/150 (37%) Frame = -2 Query: 614 DDQGNDSCDIKCQHHKVPARKKQCVDECHSREHHHPSRASCERKCSHWRDPARKEQCVQQ 435 ++ +C + K KK+C +E ++E + CE+ ++ A K++C + Sbjct: 360 EEDEKKACKELAKKKKEADEKKKC-EEAANKEKKAAEKKKCEKAAKERKEAAEKKKCEE- 417 Query: 434 CMRYGLNLXXXXXXXVIERPHAEEVEVDDQSNDSCDHKCQHHKVPARKKQCVDECHRREH 255 A + E + C+ ++ K A KK+C E ++E Sbjct: 418 ---------------------AAKKEKEAAERKKCEELAKNIKKAAEKKKC-KEAAKKEK 455 Query: 254 HHPSRAACERKCSHWRDPTRKERCVQTCMR 165 R CE + K++C +T + Sbjct: 456 EAAERKKCEELAKKIKKAAEKKKCEETAKK 485 Score = 38.1 bits (87), Expect = 0.022 Identities = 27/143 (18%), Positives = 52/143 (36%) Frame = -2 Query: 593 CDIKCQHHKVPARKKQCVDECHSREHHHPSRASCERKCSHWRDPARKEQCVQQCMRYGLN 414 C+ + K A KK+C +E +E R CE + A K++C + Sbjct: 575 CEKAAKERKEAAEKKKC-EEAAKKEKEVAERKKCEELAKKIKKAAEKKKCKE-------- 625 Query: 413 LXXXXXXXVIERPHAEEVEVDDQSNDSCDHKCQHHKVPARKKQCVDECHRREHHHPSRAA 234 A + E + + C + K A KK+C + ++E + Sbjct: 626 --------------AAKKEKEAAEREKCGELAKKIKKAAEKKKC-KKLAKKEKETAEKKK 670 Query: 233 CERKCSHWRDPTRKERCVQTCMR 165 CE+ ++ K++C + + Sbjct: 671 CEKAAKKRKEAAEKKKCAEAAKK 693 Score = 35.4 bits (80), Expect = 0.14 Identities = 27/143 (18%), Positives = 52/143 (36%) Frame = -2 Query: 593 CDIKCQHHKVPARKKQCVDECHSREHHHPSRASCERKCSHWRDPARKEQCVQQCMRYGLN 414 C + K A KK+C ++ + + CE+ ++ A K++C + + Sbjct: 511 CKKLAKKEKETAEKKKC-EKAAKKRKEAAEKKKCEKAAKKRKEAAEKKKCEKSAKK---- 565 Query: 413 LXXXXXXXVIERPHAEEVEVDDQSNDSCDHKCQHHKVPARKKQCVDECHRREHHHPSRAA 234 R A E + C+ + K A KK+C +E ++E R Sbjct: 566 -----------RKEAAEKK-------KCEKAAKERKEAAEKKKC-EEAAKKEKEVAERKK 606 Query: 233 CERKCSHWRDPTRKERCVQTCMR 165 CE + K++C + + Sbjct: 607 CEELAKKIKKAAEKKKCKEAAKK 629 Score = 35.0 bits (79), Expect = 0.18 Identities = 29/151 (19%), Positives = 57/151 (37%), Gaps = 8/151 (5%) Frame = -2 Query: 593 CDIKCQHHKVPARKKQCVDECHSREHHHPSRASCERKCSHWRDPARKEQCVQQCMRYGLN 414 C+ + K A KK+C E +E + CE ++ A +++C + + Sbjct: 671 CEKAAKKRKEAAEKKKCA-EAAKKEKEAAEKKKCEEAAKKEKEAAERKKCEELAKKIKKA 729 Query: 413 LXXXXXXXVIERPHAEEVEVDDQSNDSCDH------KCQH--HKVPARKKQCVDECHRRE 258 + ++ A E + N KC+ K A KK+C E ++E Sbjct: 730 AEKKKCKKLAKKKKAGEKNKLKKGNKKGKKALKEKKKCRELAKKKAAEKKKC-KEAAKKE 788 Query: 257 HHHPSRAACERKCSHWRDPTRKERCVQTCMR 165 + CE+ ++ K++C +T + Sbjct: 789 KEAAEKKKCEKTAKKRKEEAEKKKCEKTAKK 819 Score = 30.8 bits (68), Expect = 3.5 Identities = 25/135 (18%), Positives = 51/135 (37%) Frame = -2 Query: 569 KVPARKKQCVDECHSREHHHPSRASCERKCSHWRDPARKEQCVQQCMRYGLNLXXXXXXX 390 K A KK+C ++ +A C+ ++ K++C + + Sbjct: 343 KEEAEKKKCAALAKKQKEEDEKKA-CKELAKKKKEADEKKKCEEAANK------------ 389 Query: 389 VIERPHAEEVEVDDQSNDSCDHKCQHHKVPARKKQCVDECHRREHHHPSRAACERKCSHW 210 E+ AE+ + C+ + K A KK+C +E ++E R CE + Sbjct: 390 --EKKAAEKKK--------CEKAAKERKEAAEKKKC-EEAAKKEKEAAERKKCEELAKNI 438 Query: 209 RDPTRKERCVQTCMR 165 + K++C + + Sbjct: 439 KKAAEKKKCKEAAKK 453
>VCLA_GOSHI (P09799) Vicilin GC72-A precursor (Alpha-globulin A)| Length = 605 Score = 45.1 bits (105), Expect = 2e-04 Identities = 36/142 (25%), Positives = 56/142 (39%), Gaps = 2/142 (1%) Frame = -2 Query: 608 QGNDSCDIKCQHHKVPARKKQCVDECHSREHHHPSRASCERKCSHWRDPARKEQ-CVQQC 432 Q + C +CQ + R + D+C R E + DP R+ Q C Q C Sbjct: 39 QRYEDCRKRCQ---LETRGQTEQDKCEDRSETQLK----EEQQRDGEDPQRRYQDCRQHC 91 Query: 431 MRYGLNLXXXXXXXVIERPHAEEVEVDDQSNDSCDHKCQ-HHKVPARKKQCVDECHRREH 255 + L E+ ++ + D+ C +CQ + P RK+QCV EC + Sbjct: 92 QQEERRLRPHCEQSCREQYEKQQQQQPDKQFKECQQRCQWQEQRPERKQQCVKECREQYQ 151 Query: 254 HHPSRAACERKCSHWRDPTRKE 189 P + E K WR+ +E Sbjct: 152 EDPWKGERENK---WREEEEEE 170 Score = 33.9 bits (76), Expect = 0.41 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%) Frame = -2 Query: 611 DQGNDSCDIKCQ-HHKVPARKKQCVDECHSREHHHPSRASCERKCSHWRDPARKE 450 D+ C +CQ + P RK+QCV EC + P + E K WR+ +E Sbjct: 119 DKQFKECQQRCQWQEQRPERKQQCVKECREQYQEDPWKGERENK---WREEEEEE 170 Score = 30.8 bits (68), Expect = 3.5 Identities = 15/61 (24%), Positives = 32/61 (52%), Gaps = 7/61 (11%) Frame = -2 Query: 332 CDHKCQHHKVPAR---KKQCVDECHRREHHHPSRA--ACERKCSHWRD--PTRKERCVQT 174 C CQ + R ++ C ++ +++ P + C+++C W++ P RK++CV+ Sbjct: 87 CRQHCQQEERRLRPHCEQSCREQYEKQQQQQPDKQFKECQQRCQ-WQEQRPERKQQCVKE 145 Query: 173 C 171 C Sbjct: 146 C 146
>VCLB_GOSHI (P09801) Vicilin C72 precursor (Alpha-globulin B)| Length = 588 Score = 43.9 bits (102), Expect = 4e-04 Identities = 31/127 (24%), Positives = 46/127 (36%), Gaps = 13/127 (10%) Frame = -2 Query: 563 PARKKQCVDECHSREHHHPSRASCERKCSHW------------RDPARK-EQCVQQCMRY 423 P R + C C + CE C DP R+ E+C Q+C + Sbjct: 38 PKRYEDCRRRCEWDTRGQKEQQQCEESCKSQYGEKDQQQRHRPEDPQRRYEECQQECRQQ 97 Query: 422 GLNLXXXXXXXVIERPHAEEVEVDDQSNDSCDHKCQHHKVPARKKQCVDECHRREHHHPS 243 ++R E+ + Q + H Q + P RK+QCV EC R +P Sbjct: 98 EERQRPQCQQRCLKRFEQEQQQSQRQFQECQQHCHQQEQRPERKQQCVRECRERYQENPW 157 Query: 242 RAACERK 222 R E + Sbjct: 158 RREREEE 164 Score = 34.7 bits (78), Expect = 0.24 Identities = 27/114 (23%), Positives = 45/114 (39%), Gaps = 6/114 (5%) Frame = -2 Query: 494 CERKCSHWRDPARKEQCVQQCMRYGLNLXXXXXXXVIERPHAEEVEVDDQSNDSCDHKCQ 315 C R+C W +KEQ QQC + RP E + + C +C+ Sbjct: 44 CRRRCE-WDTRGQKEQ--QQCEESCKSQYGEKDQQQRHRP-----EDPQRRYEECQQECR 95 Query: 314 HHKVPARKKQCVDECHRREHHHPSRAA-----CERKCSHWRD-PTRKERCVQTC 171 + ++ QC C +R ++ C++ C P RK++CV+ C Sbjct: 96 QQE-ERQRPQCQQRCLKRFEQEQQQSQRQFQECQQHCHQQEQRPERKQQCVREC 148 Score = 30.4 bits (67), Expect = 4.5 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 5/39 (12%) Frame = -2 Query: 584 KCQHH-----KVPARKKQCVDECHSREHHHPSRASCERK 483 +CQ H + P RK+QCV EC R +P R E + Sbjct: 126 ECQQHCHQQEQRPERKQQCVRECRERYQENPWRREREEE 164
>MST1_DROHY (Q08695) Axoneme-associated protein mst101(1)| Length = 344 Score = 39.7 bits (91), Expect = 0.007 Identities = 26/146 (17%), Positives = 53/146 (36%), Gaps = 3/146 (2%) Frame = -2 Query: 593 CDIKCQHHKVPARKKQCVDECHSREHHHPSRASCERKCSHWRDPARKEQCVQQCMRYGLN 414 C + K A KK+C E +E + C ++ A K++C + + Sbjct: 109 CAEAAKKEKEAAEKKKCA-EAAKKEKEAAEKKKCAEAAKKEKEAAEKKKCAEAAKKEKEA 167 Query: 413 LXXXXXXXVIERPHAEEVEVDDQS---NDSCDHKCQHHKVPARKKQCVDECHRREHHHPS 243 ++ E+ +Q C + K A KK+C +E ++E Sbjct: 168 AEKKKCAEAAQKKKCAELAKKEQEAAEKKKCAEAAKKEKEAAEKKKC-EERAKKEKEAAE 226 Query: 242 RAACERKCSHWRDPTRKERCVQTCMR 165 + CE + ++ K++C + + Sbjct: 227 KKKCEERAKKEKEAAEKKKCAEAAKK 252
>VCL_THECC (Q43358) Vicilin precursor| Length = 525 Score = 32.3 bits (72), Expect = 1.2 Identities = 23/104 (22%), Positives = 40/104 (38%), Gaps = 1/104 (0%) Frame = -2 Query: 494 CERKC-SHWRDPARKEQCVQQCMRYGLNLXXXXXXXVIERPHAEEVEVDDQSNDSCDHKC 318 C+R+C S + +EQC Q+C ER + E+ + Sbjct: 45 CQRRCESEATEEREQEQCEQRC----------------EREYKEQ------------QRQ 76 Query: 317 QHHKVPARKKQCVDECHRREHHHPSRAACERKCSHWRDPTRKER 186 Q ++ + +QC C ++ + C+RKC W +ER Sbjct: 77 QEEELQRQYQQCQGRCQEQQQGQREQQQCQRKC--WEQYKEQER 118
>TICN1_MOUSE (Q62288) Testican-1 precursor (SPOCK protein)| Length = 442 Score = 31.6 bits (70), Expect = 2.0 Identities = 32/125 (25%), Positives = 42/125 (33%), Gaps = 12/125 (9%) Frame = -2 Query: 611 DQGNDSC-DIKCQHHKVPARKKQCVDECHSREHHHPSRASCERKCSHWRDPARKEQC--- 444 D D C +KC HKV + C SR+H P + HW P+ +C Sbjct: 83 DPSKDPCLKVKCSPHKVCVTQDYQTALCVSRKHLLPRQKKGNVAHKHWLGPSNLVKCKPC 142 Query: 443 --VQQCMRYGLNLXXXXXXXVIERPHAEEVEVDDQSNDSCDHKC------QHHKVPARKK 288 Q M G + +E HA N CD C + K A K Sbjct: 143 PVAQSAMVCGSDGHTYTSKCKLEF-HA--CSTGKSLNSLCDGPCPCLPEPEPLKPKAEKS 199 Query: 287 QCVDE 273 C D+ Sbjct: 200 ACTDK 204
>TICN1_HUMAN (Q08629) Testican-1 precursor (SPOCK protein)| Length = 439 Score = 30.8 bits (68), Expect = 3.5 Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 1/57 (1%) Frame = -2 Query: 611 DQGNDSC-DIKCQHHKVPARKKQCVDECHSREHHHPSRASCERKCSHWRDPARKEQC 444 D D C +KC HKV + C SR+H P + HW P+ +C Sbjct: 80 DPSKDPCLKVKCSPHKVCVTQDYQTALCVSRKHLLPRQKKGNVAQKHWVGPSNLVKC 136
>ATS20_HUMAN (P59510) ADAMTS-20 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase with thrombospondin motifs 20) (ADAM-TS 20) (ADAM-TS20) Length = 1911 Score = 30.8 bits (68), Expect = 3.5 Identities = 26/125 (20%), Positives = 42/125 (33%), Gaps = 1/125 (0%) Frame = -2 Query: 590 DIKCQHHKVPARKKQ-CVDECHSREHHHPSRASCERKCSHWRDPARKEQCVQQCMRYGLN 414 D +C H +P+ Q C +C R ++ C +C CM+Y ++ Sbjct: 884 DKECDHLPLPSFVTQSCNTDCELRGMLLAKKSECSSQCGQGY-----RTLDIHCMKYSIH 938 Query: 413 LXXXXXXXVIERPHAEEVEVDDQSNDSCDHKCQHHKVPARKKQCVDECHRREHHHPSRAA 234 + V+VDD H C P ++ C C H+ + Sbjct: 939 -------------EGQTVQVDD-------HYCGDQLKPPTQELCHGNCVFTRWHYSEWSQ 978 Query: 233 CERKC 219 C R C Sbjct: 979 CSRSC 983
>GLCAP_SOYBN (P11827) Beta-conglycinin, alpha' chain precursor| Length = 639 Score = 30.8 bits (68), Expect = 3.5 Identities = 23/113 (20%), Positives = 41/113 (36%), Gaps = 13/113 (11%) Frame = -2 Query: 521 EHHHPSRASCERKCSHWRDPARKEQCVQQCMRYGLNLXXXXXXXVIERPHAEEVEVDDQS 342 E +PS C R C+ +D R + C +C + I RP + E + Q Sbjct: 29 EKQNPSHNKCLRSCNSEKDSYRNQACHARCNLLKVEEEEECEEGQIPRPRPQHPERERQQ 88 Query: 341 NDSCD-------------HKCQHHKVPARKKQCVDECHRREHHHPSRAACERK 222 + + Q H+ +++ E HR+E H + + E + Sbjct: 89 HGEKEEDEGEQPRPFPFPRPRQPHQEEEHEQKEEHEWHRKEEKHGGKGSEEEQ 141
>MACA1_RHOOP (O84992) Maleylacetate reductase 1 (EC 1.3.1.32) (Maleylacetate| reductase I) Length = 357 Score = 30.0 bits (66), Expect = 5.9 Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 2/49 (4%) Frame = +2 Query: 437 AARTVPSLPGLSNGYTSSRKTPCLGDDAPGCGTRRRTVSSSPE--LYDV 577 AART L Y S TP LG+ G T R T++ PE +YDV Sbjct: 109 AARTGVDQVILPTTYAGSEVTPVLGETVEGRKTTRSTLAVLPETVIYDV 157
>VNCS_PAVPN (P18547) Noncapsid protein NS-1 (Nonstructural protein NS1)| Length = 660 Score = 29.6 bits (65), Expect = 7.7 Identities = 14/39 (35%), Positives = 20/39 (51%) Frame = -3 Query: 328 TTSANIIKFRRGRSSAWTSATDGSIITRAGRLARGSVAI 212 TT A +I +RG ++W ATD + L +G V I Sbjct: 52 TTDAEMINLQRGAETSWDQATDMEWESEIDSLTKGQVLI 90
>PRG4_MOUSE (Q9JM99) Proteoglycan-4 precursor (Lubricin) (Megakaryocyte| stimulating factor) (Superficial zone proteoglycan) [Contains: Proteoglycan-4 C-terminal part] Length = 1054 Score = 29.6 bits (65), Expect = 7.7 Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 2/61 (3%) Frame = -2 Query: 596 SCDIKCQHHK--VPARKKQCVDECHSREHHHPSRASCERKCSHWRDPARKEQCVQQCMRY 423 +CD CQH+ P K+ C E SC+ +C R+ C QC +Y Sbjct: 45 NCDYNCQHYMECCPDFKRVCSPEL-----------SCKGRCFESFARGRECDCDSQCKQY 93 Query: 422 G 420 G Sbjct: 94 G 94 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 74,645,070 Number of Sequences: 219361 Number of extensions: 1403416 Number of successful extensions: 4717 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 3895 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4689 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5824436538 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
