ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd25k19 |
|---|---|
| Clone Library Name | barley_pub |
>CB24_ARATH (P27521) Chlorophyll a-b binding protein 4, chloroplast precursor| (LHCI type III CAB-4) (LHCP) Length = 251 Score = 66.6 bits (161), Expect = 2e-11 Identities = 27/33 (81%), Positives = 31/33 (93%) Frame = -1 Query: 189 FLVQHNVTGKGPFENLQQHLADPWHNTIIQTIS 91 F+VQHNVTGKGPFENL QHL+DPWHNTI+QT + Sbjct: 219 FVVQHNVTGKGPFENLLQHLSDPWHNTIVQTFN 251
>CB26_ARATH (Q9XF89) Chlorophyll a-b binding protein CP26, chloroplast| precursor (Light-harvesting complex II protein 5) (LHCB5) (LHCIIc) Length = 280 Score = 42.4 bits (98), Expect = 3e-04 Identities = 17/34 (50%), Positives = 25/34 (73%) Frame = -1 Query: 189 FLVQHNVTGKGPFENLQQHLADPWHNTIIQTISG 88 F +Q VTG+GP ENL +HL+DP+ N ++ I+G Sbjct: 239 FFIQAYVTGEGPVENLAKHLSDPFGNNLLTVIAG 272
>CB4B_ARATH (Q9XF88) Chlorophyll a-b binding protein CP29.2, chloroplast| precursor (LHCII protein 4.2) (LHCB4.2) Length = 287 Score = 41.2 bits (95), Expect = 8e-04 Identities = 19/33 (57%), Positives = 20/33 (60%) Frame = -1 Query: 189 FLVQHNVTGKGPFENLQQHLADPWHNTIIQTIS 91 F VQ TGKGP N HL+DP H TII T S Sbjct: 253 FAVQAAATGKGPLNNWATHLSDPLHTTIIDTFS 285
>CB4A_ARATH (Q07473) Chlorophyll a-b binding protein CP29.1, chloroplast| precursor (LHCII protein 4.1) (LHCB4.1) Length = 290 Score = 41.2 bits (95), Expect = 8e-04 Identities = 19/33 (57%), Positives = 20/33 (60%) Frame = -1 Query: 189 FLVQHNVTGKGPFENLQQHLADPWHNTIIQTIS 91 F VQ TGKGP N HL+DP H TII T S Sbjct: 256 FAVQAAATGKGPLNNWATHLSDPLHTTIIDTFS 288
>CB11_LYCES (P12360) Chlorophyll a-b binding protein 6A, chloroplast precursor| (LHCI type I CAB-6A) (Light-harvesting complex I 26 kDa protein) Length = 246 Score = 39.7 bits (91), Expect = 0.002 Identities = 18/29 (62%), Positives = 19/29 (65%), Gaps = 1/29 (3%) Frame = -1 Query: 189 FLVQHNV-TGKGPFENLQQHLADPWHNTI 106 F VQ + G GP ENL HLADPWHN I Sbjct: 206 FCVQQSAYLGTGPLENLATHLADPWHNNI 234
>CB22_CUCSA (P08222) Chlorophyll a-b binding protein of LHCII type 1| (Chlorophyll a-b binding protein of LHCII type I) (CAB) (LHCP) (Fragment) Length = 206 Score = 39.3 bits (90), Expect = 0.003 Identities = 18/26 (69%), Positives = 19/26 (73%) Frame = -1 Query: 189 FLVQHNVTGKGPFENLQQHLADPWHN 112 F VQ VTGKGP ENL HLADP +N Sbjct: 168 FFVQAIVTGKGPLENLADHLADPVNN 193
>CB23_APIGR (P92919) Chlorophyll a-b binding protein, chloroplast precursor| (Allergen Api g 3) Length = 264 Score = 39.3 bits (90), Expect = 0.003 Identities = 18/26 (69%), Positives = 19/26 (73%) Frame = -1 Query: 189 FLVQHNVTGKGPFENLQQHLADPWHN 112 F VQ VTGKGP ENL HLADP +N Sbjct: 226 FFVQAIVTGKGPLENLADHLADPVNN 251
>CB22_HORVU (P08963) Chlorophyll a-b binding protein 2, chloroplast precursor| (LHCII type I CAB-2) (LHCP) Length = 264 Score = 39.3 bits (90), Expect = 0.003 Identities = 18/26 (69%), Positives = 19/26 (73%) Frame = -1 Query: 189 FLVQHNVTGKGPFENLQQHLADPWHN 112 F VQ VTGKGP ENL HLADP +N Sbjct: 226 FFVQAIVTGKGPLENLADHLADPVNN 251
>CB2D_LYCES (P10707) Chlorophyll a-b binding protein 1D (LHCII type I CAB-1D)| (LHCP) (Fragment) Length = 116 Score = 39.3 bits (90), Expect = 0.003 Identities = 18/26 (69%), Positives = 19/26 (73%) Frame = -1 Query: 189 FLVQHNVTGKGPFENLQQHLADPWHN 112 F VQ VTGKGP ENL HLADP +N Sbjct: 78 FFVQAIVTGKGPLENLADHLADPVNN 103
>CB2B_PINSY (P15194) Chlorophyll a-b binding protein type 2 member 1B,| chloroplast precursor (Chlorophyll a-b binding protein type II 1B) (CAB) (LHCP) Length = 274 Score = 39.3 bits (90), Expect = 0.003 Identities = 18/26 (69%), Positives = 19/26 (73%) Frame = -1 Query: 189 FLVQHNVTGKGPFENLQQHLADPWHN 112 F VQ VTGKGP ENL HLADP +N Sbjct: 236 FFVQAIVTGKGPIENLADHLADPVNN 261
>CB22_SOYBN (P09755) Chlorophyll a-b binding protein 2, chloroplast precursor| (LHCII type I CAB-2) (LHCP) Length = 256 Score = 39.3 bits (90), Expect = 0.003 Identities = 18/26 (69%), Positives = 19/26 (73%) Frame = -1 Query: 189 FLVQHNVTGKGPFENLQQHLADPWHN 112 F VQ VTGKGP ENL HLADP +N Sbjct: 218 FFVQAIVTGKGPLENLADHLADPVNN 243
>CB2A_PYRPY (P24006) Chlorophyll a-b binding protein 1A, chloroplast precursor| (LHCII type II CAB-1A) (LHCP) Length = 278 Score = 39.3 bits (90), Expect = 0.003 Identities = 18/26 (69%), Positives = 19/26 (73%) Frame = -1 Query: 189 FLVQHNVTGKGPFENLQQHLADPWHN 112 F VQ VTGKGP ENL HLADP +N Sbjct: 240 FFVQAIVTGKGPIENLADHLADPVNN 265
>CB2A_PINSY (P15193) Chlorophyll a-b binding protein type 2 member 1A,| chloroplast precursor (Chlorophyll a-b binding protein type II 1A) (CAB) (LHCP) Length = 278 Score = 39.3 bits (90), Expect = 0.003 Identities = 18/26 (69%), Positives = 19/26 (73%) Frame = -1 Query: 189 FLVQHNVTGKGPFENLQQHLADPWHN 112 F VQ VTGKGP ENL HLADP +N Sbjct: 240 FFVQAIVTGKGPIENLADHLADPVNN 265
>CB2C_LYCES (P14275) Chlorophyll a-b binding protein 1C, chloroplast precursor| (LHCII type I CAB-1C) (LHCP) (Fragments) Length = 265 Score = 39.3 bits (90), Expect = 0.003 Identities = 18/26 (69%), Positives = 19/26 (73%) Frame = -1 Query: 189 FLVQHNVTGKGPFENLQQHLADPWHN 112 F VQ VTGKGP ENL HLADP +N Sbjct: 227 FFVQAIVTGKGPLENLADHLADPVNN 252
>CB2B_LYCES (P07370) Chlorophyll a-b binding protein 1B, chloroplast precursor| (LHCII type I CAB-1B) (LHCP) Length = 265 Score = 39.3 bits (90), Expect = 0.003 Identities = 18/26 (69%), Positives = 19/26 (73%) Frame = -1 Query: 189 FLVQHNVTGKGPFENLQQHLADPWHN 112 F VQ VTGKGP ENL HLADP +N Sbjct: 227 FFVQAIVTGKGPLENLADHLADPVNN 252
>CB2A_LYCES (P14274) Chlorophyll a-b binding protein 1A, chloroplast precursor| (LHCII type I CAB-1A) (LHCP) (Fragments) Length = 265 Score = 39.3 bits (90), Expect = 0.003 Identities = 18/26 (69%), Positives = 19/26 (73%) Frame = -1 Query: 189 FLVQHNVTGKGPFENLQQHLADPWHN 112 F VQ VTGKGP ENL HLADP +N Sbjct: 227 FFVQAIVTGKGPLENLADHLADPVNN 252
>CB29_MAIZE (P27497) Chlorophyll a-b binding protein M9, chloroplast precursor| (LHCII type I CAB-M9) (LHCP) Length = 265 Score = 39.3 bits (90), Expect = 0.003 Identities = 18/26 (69%), Positives = 19/26 (73%) Frame = -1 Query: 189 FLVQHNVTGKGPFENLQQHLADPWHN 112 F VQ VTGKGP ENL HLADP +N Sbjct: 227 FFVQAIVTGKGPLENLADHLADPVNN 252
>CB22_TOBAC (P27493) Chlorophyll a-b binding protein 21, chloroplast precursor| (LHCII type I CAB-21) (LHCP) Length = 265 Score = 39.3 bits (90), Expect = 0.003 Identities = 18/26 (69%), Positives = 19/26 (73%) Frame = -1 Query: 189 FLVQHNVTGKGPFENLQQHLADPWHN 112 F VQ VTGKGP ENL HLADP +N Sbjct: 227 FFVQAIVTGKGPLENLADHLADPVNN 252
>CB21_ORYSA (P12330) Chlorophyll a-b binding protein 1, chloroplast precursor| (LHCII type I CAB-1) (LHCP) Length = 265 Score = 39.3 bits (90), Expect = 0.003 Identities = 18/26 (69%), Positives = 19/26 (73%) Frame = -1 Query: 189 FLVQHNVTGKGPFENLQQHLADPWHN 112 F VQ VTGKGP ENL HLADP +N Sbjct: 227 FFVQAIVTGKGPLENLADHLADPVNN 252
>CB21_CUCSA (P08221) Chlorophyll a-b binding protein of LHCII type I,| chloroplast precursor (CAB) (LHCP) (Fragment) Length = 255 Score = 39.3 bits (90), Expect = 0.003 Identities = 18/26 (69%), Positives = 19/26 (73%) Frame = -1 Query: 189 FLVQHNVTGKGPFENLQQHLADPWHN 112 F VQ VTGKGP ENL HLADP +N Sbjct: 217 FFVQAIVTGKGPLENLADHLADPVNN 242
>CB2G_LYCES (P07369) Chlorophyll a-b binding protein 3C, chloroplast precursor| (LHCII type I CAB-3C) (LHCP) Length = 267 Score = 39.3 bits (90), Expect = 0.003 Identities = 18/26 (69%), Positives = 19/26 (73%) Frame = -1 Query: 189 FLVQHNVTGKGPFENLQQHLADPWHN 112 F VQ VTGKGP ENL HLADP +N Sbjct: 229 FFVQAIVTGKGPLENLADHLADPVNN 254
>CB2A_SPIOL (P12333) Chlorophyll a-b binding protein, chloroplast precursor| (LHCII type I CAB) (LHCP) Length = 267 Score = 39.3 bits (90), Expect = 0.003 Identities = 18/26 (69%), Positives = 19/26 (73%) Frame = -1 Query: 189 FLVQHNVTGKGPFENLQQHLADPWHN 112 F VQ VTGKGP ENL HLADP +N Sbjct: 229 FFVQAIVTGKGPLENLADHLADPVNN 254
>CB25_TOBAC (P27496) Chlorophyll a-b binding protein 50, chloroplast precursor| (LHCII type I CAB-50) (LHCP) Length = 267 Score = 39.3 bits (90), Expect = 0.003 Identities = 18/26 (69%), Positives = 19/26 (73%) Frame = -1 Query: 189 FLVQHNVTGKGPFENLQQHLADPWHN 112 F VQ VTGKGP ENL HLADP +N Sbjct: 229 FFVQAIVTGKGPLENLADHLADPVNN 254
>CB25_PETSP (P04783) Chlorophyll a-b binding protein 91R, chloroplast precursor| (LHCII type I CAB-91R) (LHCP) Length = 267 Score = 39.3 bits (90), Expect = 0.003 Identities = 18/26 (69%), Positives = 19/26 (73%) Frame = -1 Query: 189 FLVQHNVTGKGPFENLQQHLADPWHN 112 F VQ VTGKGP ENL HLADP +N Sbjct: 229 FFVQAIVTGKGPLENLADHLADPVNN 254
>CB24_TOBAC (P27495) Chlorophyll a-b binding protein 40, chloroplast precursor| (LHCII type I CAB-40) (LHCP) Length = 267 Score = 39.3 bits (90), Expect = 0.003 Identities = 18/26 (69%), Positives = 19/26 (73%) Frame = -1 Query: 189 FLVQHNVTGKGPFENLQQHLADPWHN 112 F VQ VTGKGP ENL HLADP +N Sbjct: 229 FFVQAIVTGKGPLENLADHLADPVNN 254
>CB23_PETSP (P04781) Chlorophyll a-b binding protein 22R, chloroplast precursor| (LHCII type I CAB-22R) (LHCP) Length = 267 Score = 39.3 bits (90), Expect = 0.003 Identities = 18/26 (69%), Positives = 19/26 (73%) Frame = -1 Query: 189 FLVQHNVTGKGPFENLQQHLADPWHN 112 F VQ VTGKGP ENL HLADP +N Sbjct: 229 FFVQAIVTGKGPLENLADHLADPVNN 254
>CB23_NICPL (P12469) Chlorophyll a-b binding protein C, chloroplast precursor| (LHCII type I CAB-C) (LHCP) Length = 267 Score = 39.3 bits (90), Expect = 0.003 Identities = 18/26 (69%), Positives = 19/26 (73%) Frame = -1 Query: 189 FLVQHNVTGKGPFENLQQHLADPWHN 112 F VQ VTGKGP ENL HLADP +N Sbjct: 229 FFVQAIVTGKGPLENLADHLADPVNN 254
>CB22_PEA (P07371) Chlorophyll a-b binding protein AB80, chloroplast| precursor (LHCII type I CAB-AB80) (LHCP) Length = 269 Score = 39.3 bits (90), Expect = 0.003 Identities = 18/26 (69%), Positives = 19/26 (73%) Frame = -1 Query: 189 FLVQHNVTGKGPFENLQQHLADPWHN 112 F VQ VTGKGP ENL HLADP +N Sbjct: 231 FFVQAIVTGKGPLENLADHLADPVNN 256
>CB22_ARATH (P04778) Chlorophyll a-b binding protein 2, chloroplast precursor| (LHCII type I CAB-2) (CAB-140) (LHCP) Length = 267 Score = 39.3 bits (90), Expect = 0.003 Identities = 18/26 (69%), Positives = 19/26 (73%) Frame = -1 Query: 189 FLVQHNVTGKGPFENLQQHLADPWHN 112 F VQ VTGKGP ENL HLADP +N Sbjct: 229 FFVQAIVTGKGPIENLADHLADPVNN 254
>CB21_RAPSA (P14584) Chlorophyll a-b binding of LHCII type 1 protein| (Chlorophyll a-b binding of LHCII type I protein) (CAB) (LHCP) (Fragment) Length = 124 Score = 39.3 bits (90), Expect = 0.003 Identities = 18/26 (69%), Positives = 19/26 (73%) Frame = -1 Query: 189 FLVQHNVTGKGPFENLQQHLADPWHN 112 F VQ VTGKGP ENL HLADP +N Sbjct: 86 FFVQAIVTGKGPLENLADHLADPVNN 111
>CB21_ARATH (P04777) Chlorophyll a-b binding protein 165/180, chloroplast| precursor (LHCII type I CAB-165/180) Length = 267 Score = 39.3 bits (90), Expect = 0.003 Identities = 18/26 (69%), Positives = 19/26 (73%) Frame = -1 Query: 189 FLVQHNVTGKGPFENLQQHLADPWHN 112 F VQ VTGKGP ENL HLADP +N Sbjct: 229 FFVQAIVTGKGPIENLADHLADPVNN 254
>CB22_ORYSA (P12331) Chlorophyll a-b binding protein 2, chloroplast precursor| (LHCII type I CAB-2) (LHCP) Length = 261 Score = 39.3 bits (90), Expect = 0.003 Identities = 18/26 (69%), Positives = 19/26 (73%) Frame = -1 Query: 189 FLVQHNVTGKGPFENLQQHLADPWHN 112 F VQ VTGKGP ENL HLADP +N Sbjct: 223 FFVQAIVTGKGPLENLADHLADPVNN 248
>CB25_NICPL (P12470) Chlorophyll a-b binding protein E, chloroplast precursor| (LHCII type I CAB-E) (LHCP) Length = 266 Score = 39.3 bits (90), Expect = 0.003 Identities = 18/26 (69%), Positives = 19/26 (73%) Frame = -1 Query: 189 FLVQHNVTGKGPFENLQQHLADPWHN 112 F VQ VTGKGP ENL HLADP +N Sbjct: 228 FFVQALVTGKGPLENLADHLADPVNN 253
>CB24_PETSP (P04782) Chlorophyll a-b binding protein 25, chloroplast precursor| (LHCII type I CAB-25) (LHCP) Length = 266 Score = 39.3 bits (90), Expect = 0.003 Identities = 18/26 (69%), Positives = 19/26 (73%) Frame = -1 Query: 189 FLVQHNVTGKGPFENLQQHLADPWHN 112 F VQ VTGKGP ENL HLADP +N Sbjct: 228 FFVQAIVTGKGPLENLADHLADPVNN 253
>CB21_TOBAC (P27492) Chlorophyll a-b binding protein 16, chloroplast precursor| (LHCII type I CAB-16) (LHCP) Length = 266 Score = 39.3 bits (90), Expect = 0.003 Identities = 18/26 (69%), Positives = 19/26 (73%) Frame = -1 Query: 189 FLVQHNVTGKGPFENLQQHLADPWHN 112 F VQ VTGKGP ENL HLADP +N Sbjct: 228 FFVQAIVTGKGPLENLADHLADPVNN 253
>CB21_SINAL (P13851) Chlorophyll a-b binding protein 1, chloroplast precursor| (LHCII type I CAB-1) (LHCP) Length = 266 Score = 39.3 bits (90), Expect = 0.003 Identities = 18/26 (69%), Positives = 19/26 (73%) Frame = -1 Query: 189 FLVQHNVTGKGPFENLQQHLADPWHN 112 F VQ VTGKGP ENL HLADP +N Sbjct: 228 FFVQAIVTGKGPLENLADHLADPVNN 253
>CB21_PETSP (P04779) Chlorophyll a-b binding protein 13, chloroplast precursor| (LHCII type I CAB-13) (LHCP) Length = 266 Score = 39.3 bits (90), Expect = 0.003 Identities = 18/26 (69%), Positives = 19/26 (73%) Frame = -1 Query: 189 FLVQHNVTGKGPFENLQQHLADPWHN 112 F VQ VTGKGP ENL HLADP +N Sbjct: 228 FFVQAIVTGKGPLENLADHLADPVNN 253
>CB21_MAIZE (P12329) Chlorophyll a-b binding protein 1, chloroplast precursor| (LHCII type I CAB-1) (LHCP) Length = 262 Score = 38.5 bits (88), Expect = 0.005 Identities = 17/26 (65%), Positives = 19/26 (73%) Frame = -1 Query: 189 FLVQHNVTGKGPFENLQQHLADPWHN 112 F VQ VTGKGP ENL H+ADP +N Sbjct: 224 FFVQAIVTGKGPLENLADHIADPVNN 249
>CB2F_LYCES (P14277) Chlorophyll a-b binding protein 3B, chloroplast precursor| (LHCII type I CAB-3B) (LHCP) (Fragments) Length = 267 Score = 38.5 bits (88), Expect = 0.005 Identities = 17/26 (65%), Positives = 19/26 (73%) Frame = -1 Query: 189 FLVQHNVTGKGPFENLQQHLADPWHN 112 F VQ VTGKGP ENL H+ADP +N Sbjct: 229 FFVQAIVTGKGPLENLADHIADPVNN 254
>CB2E_LYCES (P14276) Chlorophyll a-b binding protein 3A, chloroplast precursor| (LHCII type I CAB-3A) (LHCP) (Fragments) Length = 267 Score = 38.5 bits (88), Expect = 0.005 Identities = 17/26 (65%), Positives = 19/26 (73%) Frame = -1 Query: 189 FLVQHNVTGKGPFENLQQHLADPWHN 112 F VQ VTGKGP ENL H+ADP +N Sbjct: 229 FFVQAIVTGKGPLENLADHIADPVNN 254
>CB22_MAIZE (P06671) Chlorophyll a-b binding protein, chloroplast precursor| (LHCII type I CAB) (LHCP) Length = 265 Score = 38.5 bits (88), Expect = 0.005 Identities = 17/26 (65%), Positives = 19/26 (73%) Frame = -1 Query: 189 FLVQHNVTGKGPFENLQQHLADPWHN 112 F VQ VTGKGP ENL H+ADP +N Sbjct: 227 FFVQAIVTGKGPLENLADHIADPVNN 252
>CB2_PHYPA (P20866) Chlorophyll a-b binding protein, chloroplast precursor| (LHCII type I CAB) (LHCP) Length = 269 Score = 38.5 bits (88), Expect = 0.005 Identities = 18/26 (69%), Positives = 18/26 (69%) Frame = -1 Query: 189 FLVQHNVTGKGPFENLQQHLADPWHN 112 F VQ VTGKGP ENL HLADP N Sbjct: 230 FFVQAIVTGKGPLENLNDHLADPVAN 255
>CB22_PINSY (P15192) Chlorophyll a-b binding protein type 2 member 2| (Chlorophyll a-b binding protein type II 2) (CAB) (LHCP) (Fragment) Length = 150 Score = 38.1 bits (87), Expect = 0.006 Identities = 18/26 (69%), Positives = 18/26 (69%) Frame = -1 Query: 189 FLVQHNVTGKGPFENLQQHLADPWHN 112 F VQ VTGKGP ENL HLADP N Sbjct: 112 FFVQAIVTGKGPIENLYDHLADPVAN 137
>CB21_PINTH (P10049) Chlorophyll a-b binding protein type I, chloroplast| precursor (CAB) (LHCP) Length = 266 Score = 38.1 bits (87), Expect = 0.006 Identities = 18/26 (69%), Positives = 18/26 (69%) Frame = -1 Query: 189 FLVQHNVTGKGPFENLQQHLADPWHN 112 F VQ VTGKGP ENL HLADP N Sbjct: 228 FFVQAIVTGKGPIENLYDHLADPVAN 253
>CB28_PEA (P27490) Chlorophyll a-b binding protein 8, chloroplast precursor| (LHCII type I CAB-8) Length = 268 Score = 38.1 bits (87), Expect = 0.006 Identities = 17/26 (65%), Positives = 19/26 (73%) Frame = -1 Query: 189 FLVQHNVTGKGPFENLQQHLADPWHN 112 F VQ VTGKGP ENL HL+DP +N Sbjct: 230 FFVQAIVTGKGPLENLADHLSDPVNN 255
>CB23_POLMU (P15195) Chlorophyll a-b binding protein type 1 member F3,| chloroplast precursor (DE Chlorophyll a-b binding protein type I F3) (CAB-F3) (LHCP) Length = 265 Score = 38.1 bits (87), Expect = 0.006 Identities = 17/23 (73%), Positives = 17/23 (73%) Frame = -1 Query: 189 FLVQHNVTGKGPFENLQQHLADP 121 F VQ VTGKGP ENL HLADP Sbjct: 227 FFVQAIVTGKGPIENLSDHLADP 249
>CB25_LYCES (P14279) Chlorophyll a-b binding protein 5, chloroplast precursor| (LHCII type I CAB-5) (LHCP) (Fragment) Length = 237 Score = 37.7 bits (86), Expect = 0.008 Identities = 17/26 (65%), Positives = 18/26 (69%) Frame = -1 Query: 189 FLVQHNVTGKGPFENLQQHLADPWHN 112 F VQ VTGKGP ENL H+ADP N Sbjct: 199 FFVQAIVTGKGPIENLSDHIADPVAN 224
>CB21_SOYBN (P12471) Chlorophyll a-b binding protein, chloroplast precursor| (LHCII type I CAB) (LHCP) (Fragment) Length = 245 Score = 37.7 bits (86), Expect = 0.008 Identities = 17/26 (65%), Positives = 19/26 (73%) Frame = -1 Query: 189 FLVQHNVTGKGPFENLQQHLADPWHN 112 F VQ VTGKGP ENL HLA+P +N Sbjct: 207 FFVQAIVTGKGPLENLADHLAEPVNN 232
>CB27_TOBAC (P27491) Chlorophyll a-b binding protein 7, chloroplast precursor| (LHCII type I CAB-7) (LHCP) Length = 267 Score = 37.7 bits (86), Expect = 0.008 Identities = 17/26 (65%), Positives = 19/26 (73%) Frame = -1 Query: 189 FLVQHNVTGKGPFENLQQHLADPWHN 112 F VQ VTGKGP +NL HLADP +N Sbjct: 229 FFVQAIVTGKGPLDNLVDHLADPVNN 254
>CB48_MAIZE (Q00827) Chlorophyll a-b binding protein 48, chloroplast precursor| (LHCII type I CAB-48) (LHCP) Length = 264 Score = 37.7 bits (86), Expect = 0.008 Identities = 17/26 (65%), Positives = 18/26 (69%) Frame = -1 Query: 189 FLVQHNVTGKGPFENLQQHLADPWHN 112 F VQ VTGKGP ENL HL DP +N Sbjct: 226 FFVQAIVTGKGPIENLADHLTDPVNN 251
>CB21_LEMGI (P12328) Chlorophyll a-b binding protein of LHCII type I,| chloroplast precursor (CAB) (LHCP) Length = 264 Score = 37.4 bits (85), Expect = 0.011 Identities = 17/26 (65%), Positives = 18/26 (69%) Frame = -1 Query: 189 FLVQHNVTGKGPFENLQQHLADPWHN 112 F VQ VTGKGP ENL H+ADP N Sbjct: 226 FFVQAIVTGKGPIENLADHIADPVAN 251
>CB12_PETHY (P13869) Chlorophyll a-b binding protein, chloroplast precursor| (LHCI type II CAB) Length = 270 Score = 37.4 bits (85), Expect = 0.011 Identities = 17/30 (56%), Positives = 18/30 (60%) Frame = -1 Query: 180 QHNVTGKGPFENLQQHLADPWHNTIIQTIS 91 QH TG GP +NL HLADP H TI S Sbjct: 239 QHIYTGTGPIDNLFAHLADPGHATIFAAFS 268
>CB12_LYCES (P10708) Chlorophyll a-b binding protein 7, chloroplast precursor| (LHCI type II CAB-7) Length = 270 Score = 37.4 bits (85), Expect = 0.011 Identities = 17/30 (56%), Positives = 18/30 (60%) Frame = -1 Query: 180 QHNVTGKGPFENLQQHLADPWHNTIIQTIS 91 QH TG GP +NL HLADP H TI S Sbjct: 239 QHIYTGTGPIDNLFAHLADPGHATIFAAFS 268
>CB2_CHLMO (P22686) Chlorophyll a-b binding protein of LHCII type I,| chloroplast precursor (CAB) (LHCP) Length = 256 Score = 37.4 bits (85), Expect = 0.011 Identities = 17/26 (65%), Positives = 18/26 (69%) Frame = -1 Query: 189 FLVQHNVTGKGPFENLQQHLADPWHN 112 F VQ VTGKGP +NL HLADP N Sbjct: 218 FFVQAIVTGKGPIQNLADHLADPGTN 243
>CB13_LYCES (P27522) Chlorophyll a-b binding protein 8, chloroplast precursor| (LHCI type III CAB-8) Length = 273 Score = 37.4 bits (85), Expect = 0.011 Identities = 14/32 (43%), Positives = 23/32 (71%) Frame = -1 Query: 189 FLVQHNVTGKGPFENLQQHLADPWHNTIIQTI 94 + +Q VTG GP++NL HLADP +N ++ ++ Sbjct: 239 YFIQALVTGVGPYQNLLDHLADPVNNNVLTSL 270
>CB22_PETSP (P04780) Chlorophyll a-b binding protein 22L, chloroplast precursor| (LHCII type I CAB-22L) (LHCP) Length = 267 Score = 37.4 bits (85), Expect = 0.011 Identities = 16/26 (61%), Positives = 18/26 (69%) Frame = -1 Query: 189 FLVQHNVTGKGPFENLQQHLADPWHN 112 F +Q VTGKGP ENL HL DP +N Sbjct: 229 FFIQAIVTGKGPLENLADHLVDPVNN 254
>CB21_GOSHI (P27518) Chlorophyll a-b binding protein 151, chloroplast precursor| (LHCII type II CAB-151) (LHCP) Length = 265 Score = 37.4 bits (85), Expect = 0.011 Identities = 18/26 (69%), Positives = 18/26 (69%) Frame = -1 Query: 189 FLVQHNVTGKGPFENLQQHLADPWHN 112 F VQ VTGKGP ENL HLADP N Sbjct: 227 FFVQAIVTGKGPIENLFDHLADPVAN 252
>CB2_DUNSA (P20865) Chlorophyll a-b binding protein of LHCII type I,| chloroplast precursor (CAB) (LHCP) Length = 273 Score = 37.0 bits (84), Expect = 0.014 Identities = 17/26 (65%), Positives = 18/26 (69%) Frame = -1 Query: 189 FLVQHNVTGKGPFENLQQHLADPWHN 112 F VQ VTGKGP ENL HLA+P N Sbjct: 236 FFVQAIVTGKGPIENLTDHLANPAEN 261
>CB26_PETSP (P12062) Chlorophyll a-b binding protein 37, chloroplast precursor| (LHCII type I CAB-37) (LHCP) Length = 265 Score = 37.0 bits (84), Expect = 0.014 Identities = 17/26 (65%), Positives = 18/26 (69%) Frame = -1 Query: 189 FLVQHNVTGKGPFENLQQHLADPWHN 112 F VQ VTGKGP ENL H+ADP N Sbjct: 227 FFVQAIVTGKGPIENLYDHVADPVAN 252
>CB21_PEA (P04159) Chlorophyll a-b binding protein AB96 (LHCII type I| CAB-AB96) (LHCP) (Major 15) (Fragment) Length = 228 Score = 37.0 bits (84), Expect = 0.014 Identities = 17/26 (65%), Positives = 18/26 (69%) Frame = -1 Query: 189 FLVQHNVTGKGPFENLQQHLADPWHN 112 F V VTGKGP ENL HLADP +N Sbjct: 190 FFVPAIVTGKGPLENLADHLADPVNN 215
>CB23_SOYBN (P09756) Chlorophyll a-b binding protein 3, chloroplast precursor| (LHCII type I CAB-3) (LHCP) Length = 263 Score = 36.6 bits (83), Expect = 0.019 Identities = 17/26 (65%), Positives = 18/26 (69%) Frame = -1 Query: 189 FLVQHNVTGKGPFENLQQHLADPWHN 112 F VQ VTGKGP ENL HLA P +N Sbjct: 225 FFVQAIVTGKGPLENLADHLAGPVNN 250
>CB2_DUNTE (P27517) Chlorophyll a-b binding protein of LHCII type I,| chloroplast precursor (CAB) (LHCP) Length = 253 Score = 36.6 bits (83), Expect = 0.019 Identities = 17/26 (65%), Positives = 18/26 (69%) Frame = -1 Query: 189 FLVQHNVTGKGPFENLQQHLADPWHN 112 F VQ VTGKGP +NL HLADP N Sbjct: 215 FFVQAIVTGKGPVQNLTDHLADPTVN 240
>CB21_WHEAT (P04784) Chlorophyll a-b binding protein, chloroplast precursor| (LHCII type I CAB) (LHCP) Length = 266 Score = 36.6 bits (83), Expect = 0.019 Identities = 16/26 (61%), Positives = 19/26 (73%) Frame = -1 Query: 189 FLVQHNVTGKGPFENLQQHLADPWHN 112 F VQ VTGKGP E+L H+ADP +N Sbjct: 228 FFVQAIVTGKGPLEDLADHIADPVNN 253
>CB23_ORYSA (P27519) Chlorophyll a-b binding protein, chloroplast precursor| (LHCII type I CAB) (LHCP) Length = 263 Score = 36.2 bits (82), Expect = 0.024 Identities = 17/26 (65%), Positives = 18/26 (69%) Frame = -1 Query: 189 FLVQHNVTGKGPFENLQQHLADPWHN 112 F VQ VTGKGP ENL H+ADP N Sbjct: 225 FFVQAIVTGKGPIENLFDHVADPVAN 250
>CB23_TOBAC (P27494) Chlorophyll a-b binding protein 36, chloroplast precursor| (LHCII type I CAB-36) (LHCP) Length = 265 Score = 36.2 bits (82), Expect = 0.024 Identities = 17/26 (65%), Positives = 18/26 (69%) Frame = -1 Query: 189 FLVQHNVTGKGPFENLQQHLADPWHN 112 F VQ VTGKGP ENL H+ADP N Sbjct: 227 FFVQAIVTGKGPIENLFDHVADPVAN 252
>CB23_PEA (P27520) Chlorophyll a-b binding protein 215, chloroplast precursor| (LHCII type II CAB-215) (LHCP) Length = 265 Score = 35.8 bits (81), Expect = 0.032 Identities = 16/26 (61%), Positives = 18/26 (69%) Frame = -1 Query: 189 FLVQHNVTGKGPFENLQQHLADPWHN 112 F VQ VTGKGP +NL H+ADP N Sbjct: 227 FFVQAIVTGKGPIQNLYDHVADPVAN 252
>CB24_LYCES (P14278) Chlorophyll a-b binding protein 4, chloroplast precursor| (LHCII type I CAB-4) (LHCP) Length = 265 Score = 35.4 bits (80), Expect = 0.042 Identities = 16/26 (61%), Positives = 17/26 (65%) Frame = -1 Query: 189 FLVQHNVTGKGPFENLQQHLADPWHN 112 F VQ VTGKGP ENL H+ DP N Sbjct: 227 FFVQAIVTGKGPIENLSDHINDPVAN 252
>CB2_CHLRE (P14273) Chlorophyll a-b binding protein of LHCII type I,| chloroplast precursor (CAB) (LHCP) Length = 253 Score = 35.0 bits (79), Expect = 0.055 Identities = 16/26 (61%), Positives = 18/26 (69%) Frame = -1 Query: 189 FLVQHNVTGKGPFENLQQHLADPWHN 112 F VQ VTGKGP +NL HLA+P N Sbjct: 215 FFVQAIVTGKGPVQNLDDHLANPTVN 240
>CB23_HORVU (P27523) Chlorophyll a-b binding protein of LHCII type III,| chloroplast precursor (CAB) Length = 268 Score = 35.0 bits (79), Expect = 0.055 Identities = 17/26 (65%), Positives = 17/26 (65%) Frame = -1 Query: 189 FLVQHNVTGKGPFENLQQHLADPWHN 112 F VQ VTGKGP ENL HL DP N Sbjct: 230 FFVQAIVTGKGPLENLFDHLDDPVAN 255
>CB23_LYCES (P27489) Chlorophyll a-b binding protein 13, chloroplast precursor| (LHCII type III CAB-13) Length = 265 Score = 33.5 bits (75), Expect = 0.16 Identities = 16/26 (61%), Positives = 17/26 (65%) Frame = -1 Query: 189 FLVQHNVTGKGPFENLQQHLADPWHN 112 F VQ VTGKGP ENL HL +P N Sbjct: 227 FFVQAIVTGKGPLENLLDHLDNPVAN 252
>MYB1_HORVU (P20026) Myb-related protein Hv1| Length = 267 Score = 31.2 bits (69), Expect = 0.79 Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 4/41 (9%) Frame = -3 Query: 181 AAQRDREGAV----REPAAAPGRPMAQHHHPDHLRPINPSI 71 +AQRD +GAV EPA A A HH DH NP + Sbjct: 144 SAQRDDKGAVFRRDAEPAKAAAAAAAISHHVDHHHRSNPQL 184
>KIF1C_MOUSE (O35071) Kinesin-like protein KIF1C| Length = 1100 Score = 30.4 bits (67), Expect = 1.3 Identities = 15/41 (36%), Positives = 20/41 (48%) Frame = -3 Query: 160 GAVREPAAAPGRPMAQHHHPDHLRPINPSISPTKEVSGGSE 38 G V PA++P P + P H + PS SP+ E G E Sbjct: 398 GGVLPPASSPPAPASPSSPPPHNGELEPSFSPSAEPQIGPE 438
>BOWEL_DROME (Q9VQU9) Protein bowel (Brother of odd with entrails limited)| Length = 744 Score = 30.0 bits (66), Expect = 1.8 Identities = 13/32 (40%), Positives = 15/32 (46%) Frame = -3 Query: 160 GAVREPAAAPGRPMAQHHHPDHLRPINPSISP 65 GA P A PG P H HP H + P+ P Sbjct: 560 GAAGPPPAPPGAPPPTHQHPGHPHLLPPNGDP 591
>PDM1_DROME (P31368) Protein nubbin (Protein twain) (POU domain protein 1)| (PDM-1) (dPOU-19) (dOCT1) Length = 601 Score = 30.0 bits (66), Expect = 1.8 Identities = 14/37 (37%), Positives = 23/37 (62%) Frame = -3 Query: 157 AVREPAAAPGRPMAQHHHPDHLRPINPSISPTKEVSG 47 A+R PA++P + HHHP + P PS + + ++SG Sbjct: 347 AIRSPASSPQQLHHHHHHPLQITP--PSSAASLKLSG 381
>OPSD1_ANGAN (Q90214) Rhodopsin, deep-sea form| Length = 352 Score = 29.6 bits (65), Expect = 2.3 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 2/31 (6%) Frame = -1 Query: 189 FLVQHNVTG--KGPFENLQQHLADPWHNTII 103 ++ N+TG + PFE Q +LA+PW TI+ Sbjct: 10 YIPMSNITGVVRSPFEYPQYYLAEPWAYTIL 40
>MICA2_HUMAN (O94851) Protein MICAL-2| Length = 1124 Score = 29.3 bits (64), Expect = 3.0 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 5/37 (13%) Frame = -3 Query: 142 AAAPGR-----PMAQHHHPDHLRPINPSISPTKEVSG 47 +A+P R P H HP HLR ++P ++ K SG Sbjct: 922 SASPARKEKKSPSGFHFHPSHLRTVHPQLTVGKVSSG 958
>GLE1_YEAST (Q12315) Nucleoporin GLE1 (Nuclear pore protein GLE1) (RNA export| factor GLE1) Length = 538 Score = 28.9 bits (63), Expect = 3.9 Identities = 14/30 (46%), Positives = 16/30 (53%) Frame = -2 Query: 146 TCSSTWPTHGTTPSSRPSPANKSVDFTDQG 57 TCS+T T P+ PSPA K FT G Sbjct: 21 TCSTTSSTSSQCPTPEPSPAIKLPSFTKVG 50
>HCN4_HUMAN (Q9Y3Q4) Potassium/sodium hyperpolarization-activated cyclic| nucleotide-gated channel 4 Length = 1203 Score = 28.9 bits (63), Expect = 3.9 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 1/50 (2%) Frame = -3 Query: 187 PG-AAQRDREGAVREPAAAPGRPMAQHHHPDHLRPINPSISPTKEVSGGS 41 PG AA+ +R GA +PAA+P P Q P PS+ +V GG+ Sbjct: 146 PGLAAEPERPGASAQPAASPPPPQ-QPPQPASASCEQPSVDTAIKVEGGA 194
>BAT3_RAT (Q6MG49) Large proline-rich protein BAT3 (HLA-B-associated| transcript 3) Length = 1096 Score = 28.9 bits (63), Expect = 3.9 Identities = 15/44 (34%), Positives = 22/44 (50%) Frame = +3 Query: 54 TSLVGEIDGFIGRRWSG*WCCAMGRPGAAAGSRTAPSRSRCAAP 185 TSL + G +G+ A G PG A S +AP+ ++ AP Sbjct: 529 TSLAQMVSGLVGQLLMQPVLVAQGTPGMAPASASAPATAQAQAP 572
>OTX1_BRARE (Q91994) Homeobox protein OTX1 (ZOTX1)| Length = 323 Score = 28.9 bits (63), Expect = 3.9 Identities = 11/21 (52%), Positives = 12/21 (57%) Frame = -3 Query: 124 PMAQHHHPDHLRPINPSISPT 62 PM HHHP L P+ S PT Sbjct: 236 PMHSHHHPHQLSPMTASSMPT 256
>SALM_DROME (P39770) Homeotic protein spalt-major| Length = 1365 Score = 28.9 bits (63), Expect = 3.9 Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 3/40 (7%) Frame = -3 Query: 169 DREGAVREPAAA---PGRPMAQHHHPDHLRPINPSISPTK 59 + VR PA PG P HHHP H+ +P +P K Sbjct: 741 EHHSPVRSPAGGALPPGVPPPPHHHPHHMAR-SPFFNPIK 779
>ADRB3_CAVPO (Q60483) Beta-3 adrenergic receptor (Beta-3 adrenoceptor) (Beta-3| adrenoreceptor) (Fragment) Length = 351 Score = 28.9 bits (63), Expect = 3.9 Identities = 10/17 (58%), Positives = 12/17 (70%) Frame = +2 Query: 113 LCHGSARCCCRFSNGPF 163 LCHG+ RCC SN P+ Sbjct: 185 LCHGNPRCCAFVSNVPY 201
>CB21_EUGGR (P12327) Chlorophyll a-b binding protein of LHCII type 1| (Chlorophyll a-b binding protein of LHCII type I) (CAB) (LHCP) (Fragment) Length = 127 Score = 28.9 bits (63), Expect = 3.9 Identities = 13/23 (56%), Positives = 14/23 (60%) Frame = -1 Query: 189 FLVQHNVTGKGPFENLQQHLADP 121 F Q VTG+GP EN HL DP Sbjct: 84 FYAQAIVTGEGPVENWLYHLQDP 106
>OPSD_MOUSE (P15409) Rhodopsin| Length = 348 Score = 28.5 bits (62), Expect = 5.1 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 2/26 (7%) Frame = -1 Query: 174 NVTGKG--PFENLQQHLADPWHNTII 103 NVTG G PFE Q +LA+PW +++ Sbjct: 15 NVTGVGRSPFEQPQYYLAEPWQFSML 40
>RNPA_XANAC (Q8PEH6) Ribonuclease P protein component (EC 3.1.26.5) (RNaseP| protein) (RNase P protein) (Protein C5) Length = 145 Score = 28.1 bits (61), Expect = 6.7 Identities = 14/32 (43%), Positives = 17/32 (53%) Frame = -3 Query: 166 REGAVREPAAAPGRPMAQHHHPDHLRPINPSI 71 R GA+ PAAA P A+ HP L P P + Sbjct: 114 RAGALPLPAAAGTMPPARTVHPSSLSPTEPEL 145
>OTX1_RAT (Q63410) Homeobox protein OTX1| Length = 355 Score = 27.7 bits (60), Expect = 8.7 Identities = 10/17 (58%), Positives = 11/17 (64%) Frame = -3 Query: 124 PMAQHHHPDHLRPINPS 74 PM HHHP L P+ PS Sbjct: 254 PMHSHHHPHQLSPMAPS 270
>OTX1_MOUSE (P80205) Homeobox protein OTX1| Length = 355 Score = 27.7 bits (60), Expect = 8.7 Identities = 10/17 (58%), Positives = 11/17 (64%) Frame = -3 Query: 124 PMAQHHHPDHLRPINPS 74 PM HHHP L P+ PS Sbjct: 254 PMHSHHHPHQLSPMAPS 270
>ODP2_RAT (P08461) Dihydrolipoyllysine-residue acetyltransferase component of| pyruvate dehydrogenase complex (EC 2.3.1.12) (E2) (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex) (PDC-E2) (70 kDa mitochondrial autoantigen of Length = 555 Score = 27.7 bits (60), Expect = 8.7 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 3/43 (6%) Frame = -3 Query: 181 AAQRDREGAVREPAAAPGRPMAQ---HHHPDHLRPINPSISPT 62 AA + PAAAP P A +P H++ + P++SPT Sbjct: 100 AATQAAPAPAAAPAAAPAAPSASAPGSSYPVHMQIVLPALSPT 142
>OTX1_HUMAN (P32242) Homeobox protein OTX1| Length = 354 Score = 27.7 bits (60), Expect = 8.7 Identities = 10/17 (58%), Positives = 11/17 (64%) Frame = -3 Query: 124 PMAQHHHPDHLRPINPS 74 PM HHHP L P+ PS Sbjct: 254 PMHSHHHPHQLSPMAPS 270
>MARCS_RAT (P30009) Myristoylated alanine-rich C-kinase substrate (MARCKS)| (Protein kinase C substrate 80 kDa protein) Length = 308 Score = 27.7 bits (60), Expect = 8.7 Identities = 14/25 (56%), Positives = 16/25 (64%) Frame = -3 Query: 187 PGAAQRDREGAVREPAAAPGRPMAQ 113 PGAA D+E A EP A PG P A+ Sbjct: 93 PGAATADKEAAEAEP-AEPGSPSAE 116 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 31,168,395 Number of Sequences: 219361 Number of extensions: 563438 Number of successful extensions: 2626 Number of sequences better than 10.0: 90 Number of HSP's better than 10.0 without gapping: 2539 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2623 length of database: 80,573,946 effective HSP length: 38 effective length of database: 72,238,228 effective search space used: 1733717472 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
