ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd25k19
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|S68729.1| LHC Ib-20=light-harvesting complex I [Hordeum vulga... 321 4e-85
2gb|AF287276.1|AF287276 Hordeum vulgare chlorophyll a/b-binding p... 214 7e-53
3ref|XM_482572.1| Oryza sativa (japonica cultivar-group), mRNA 111 8e-22
4ref|XM_507585.1| PREDICTED Oryza sativa (japonica cultivar-group... 111 8e-22
5ref|XM_507584.1| PREDICTED Oryza sativa (japonica cultivar-group... 111 8e-22
6ref|XM_507583.1| PREDICTED Oryza sativa (japonica cultivar-group... 111 8e-22
7ref|XM_507582.1| PREDICTED Oryza sativa (japonica cultivar-group... 111 8e-22
8ref|XM_507239.2| PREDICTED Oryza sativa (japonica cultivar-group... 111 8e-22
9gb|AY445626.2| Oryza sativa (japonica cultivar-group) chlorophyl... 111 8e-22
10dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 111 8e-22
11dbj|AP005757.2| Oryza sativa (japonica cultivar-group) genomic D... 111 8e-22
12dbj|AK104499.1| Oryza sativa (japonica cultivar-group) cDNA clon... 111 8e-22
13dbj|AK104416.1| Oryza sativa (japonica cultivar-group) cDNA clon... 111 8e-22
14dbj|AK103921.1| Oryza sativa (japonica cultivar-group) cDNA clon... 111 8e-22
15dbj|AK067809.1| Oryza sativa (japonica cultivar-group) cDNA clon... 111 8e-22
16dbj|AK067712.1| Oryza sativa (japonica cultivar-group) cDNA clon... 111 8e-22
17dbj|AK060222.1| Oryza sativa (japonica cultivar-group) cDNA clon... 111 8e-22
18gb|AF094775.1|AF094775 Oryza sativa chlorophyll a/b-binding prot... 111 8e-22
19ref|XM_482573.1| Oryza sativa (japonica cultivar-group), mRNA 100 3e-18
20emb|X57706.1|LECAB11 L.esculentum DNA for CAB11 gene 78 1e-11
21gb|AY233205.1| Vitis vinifera chlorophyll a/b-binding protein (L... 52 6e-04
22emb|AJ579711.2|BVU579711 Beta vulgaris mRNA for chloroplast chlo... 52 6e-04
23gb|BC002118.1| Mus musculus cDNA clone MGC:6623 IMAGE:3491066, c... 52 6e-04
24gb|AY109341.1| Zea mays CL4601_3 mRNA sequence 48 0.010
25emb|X82497.1|NTCAG4 N.tabacum mRNA for light-harvesting Ch1 a/b ... 44 0.15
26emb|Z17226.1|PSLHCA411 Pinus sylvestris Lhca4*1-1 gene encoding ... 42 0.60
27emb|Z16409.1|PSLHCA412 P.sylvestris Lhca4*1-2 mRNA encoding Lhca... 42 0.60
28emb|AJ309094.1|PPI309094 Pinus pinaster mRNA for putative chloro... 42 0.60
29emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid compl... 42 0.60
30ref|NM_188089.1| Oryza sativa (japonica cultivar-group), Ozsa852... 40 2.4
31ref|XM_535195.2| PREDICTED: Canis familiaris similar to inter-al... 40 2.4
32emb|AL445243.3| Human DNA sequence from clone RP11-538C21 on chr... 40 2.4
33gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome 40 2.4
34gb|AC084016.12| Homo sapiens 3 BAC RP11-190F16 (Roswell Park Can... 40 2.4
35dbj|AB189167.1| Oryza sativa (japonica cultivar-group) OsIDHa mR... 40 2.4
36gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete g... 40 2.4
37dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.4
38dbj|AP000836.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.4
39dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 2.4
40dbj|AK059596.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 2.4
41gb|AF082100.1|AF082100 Streptomyces sp. MA6548 FK506 peptide syn... 40 2.4
42emb|CT030126.6| Mouse DNA sequence from clone RP23-430F12 on chr... 40 2.4
43gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome 38 9.3
44gb|AC166040.3| Mus musculus 6 BAC RP24-538P5 (Roswell Park Cance... 38 9.3
45emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete ... 38 9.3
46ref|XM_743018.1| Aspergillus fumigatus Af293 alpha/beta hydrolas... 38 9.3
47emb|AL611933.30| Human DNA sequence from clone RP11-374C13 on ch... 38 9.3
48emb|AL939117.1|SCO939117 Streptomyces coelicolor A3(2) complete ... 38 9.3
49emb|BX469902.7| Zebrafish DNA sequence from clone CH211-277G23 i... 38 9.3
50dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, c... 38 9.3
51dbj|AK126180.1| Homo sapiens cDNA FLJ44192 fis, clone THYMU2039780 38 9.3
52gb|AE012055.1| Xanthomonas axonopodis pv. citri str. 306, secti... 38 9.3
53gb|AE012266.1| Xanthomonas campestris pv. campestris str. ATCC 3... 38 9.3
54ref|XM_928231.1| PREDICTED: Homo sapiens hypothetical protein LO... 38 9.3
55ref|XM_932687.1| PREDICTED: Homo sapiens hypothetical protein LO... 38 9.3
56gb|CP000249.1| Frankia sp. CcI3, complete genome 38 9.3
57gb|DQ311211.1| Bombyx mori proteasome zeta subunit mRNA, complet... 38 9.3
58gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, ... 38 9.3
59gb|AC137526.1| Homo sapiens chromosome 16 clone LA16c-444G7, com... 38 9.3
60gb|AC133781.4| Homo sapiens BAC clone RP11-756K13 from 2, comple... 38 9.3
61gb|AC133528.4| Homo sapiens BAC clone RP11-367H1 from 2, complet... 38 9.3
62gb|AE004440.1| Pseudomonas aeruginosa PAO1, section 1 of 529 of ... 38 9.3
63gb|AY144442.1| Sorghum bicolor BAC 95A23/98N8.1 Rph region, part... 38 9.3
64gb|AC114730.5| Homo sapiens BAC clone RP13-925E23 from 2, comple... 38 9.3
65emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 38 9.3
66gb|AC116703.10| Mus musculus chromosome 6, clone RP23-16O17, com... 38 9.3
67gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete... 38 9.3
68gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 38 9.3
69gb|AC139323.4| Mus musculus BAC clone RP24-383P22 from 13, compl... 38 9.3
70emb|AL807385.11| Mouse DNA sequence from clone RP23-143B14 on ch... 38 9.3
71emb|AL671911.12| Mouse DNA sequence from clone RP23-250F8 on chr... 38 9.3 
>gb|S68729.1| LHC Ib-20=light-harvesting complex I [Hordeum vulgare=barley,
           Prato, mRNA Chloroplast, 939 nt]
          Length = 939

 Score =  321 bits (162), Expect = 4e-85
 Identities = 184/189 (97%), Gaps = 2/189 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccacactttgtacatcctcagnaccccaaaataataattcagaaccacctgaaacctcct 60
           ||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||
Sbjct: 775 ccacactttgtacatcctcagcaccccaaaataataattcaga-ccacct-aaacctcct 718

                                                                       
Query: 61  tggtcggtgaaatcgacggatttattggccggagatggtctggatgatggtgttgtgcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 tggtcggtgaaatcgacggatttattggccggagatggtctggatgatggtgttgtgcca 658

                                                                       
Query: 121 tgggtcggccaggtgctgctgcaggttctcgaacggccccttcccggtcacgttgtgctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||
Sbjct: 657 tgggtcggccaggtgctgctgcaggttctcgaacggccccttcccgtgcacgttgtgctg 598

                    
Query: 181 caccaggaa 189
           |||||||||
Sbjct: 597 caccaggaa 589
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>gb|AF287276.1|AF287276 Hordeum vulgare chlorophyll a/b-binding protein precursor (Lhca4)
           mRNA, partial cds; nuclear gene for chloroplast product
          Length = 687

 Score =  214 bits (108), Expect = 7e-53
 Identities = 108/108 (100%)
 Strand = Plus / Minus

                                                                       
Query: 82  ttattggccggagatggtctggatgatggtgttgtgccatgggtcggccaggtgctgctg 141
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 ttattggccggagatggtctggatgatggtgttgtgccatgggtcggccaggtgctgctg 628

                                                           
Query: 142 caggttctcgaacggccccttcccggtcacgttgtgctgcaccaggaa 189
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 caggttctcgaacggccccttcccggtcacgttgtgctgcaccaggaa 580
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>ref|XM_482572.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1070

 Score =  111 bits (56), Expect = 8e-22
 Identities = 83/92 (90%)
 Strand = Plus / Minus

                                                                       
Query: 98  gtctggatgatggtgttgtgccatgggtcggccaggtgctgctgcaggttctcgaacggc 157
           ||||||||||||||||||||||| ||||| | |||||||||| ||||||| ||||| |||
Sbjct: 787 gtctggatgatggtgttgtgccacgggtcagacaggtgctgcagcaggttgtcgaagggc 728

                                           
Query: 158 cccttcccggtcacgttgtgctgcaccaggaa 189
           ||||||   |||||||||||||||||||||||
Sbjct: 727 cccttctgcgtcacgttgtgctgcaccaggaa 696
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>ref|XM_507585.1| PREDICTED Oryza sativa (japonica cultivar-group), P0413H11.35 mRNA
          Length = 1138

 Score =  111 bits (56), Expect = 8e-22
 Identities = 83/92 (90%)
 Strand = Plus / Minus

                                                                       
Query: 98  gtctggatgatggtgttgtgccatgggtcggccaggtgctgctgcaggttctcgaacggc 157
           ||||||||||||||||||||||| ||||| | |||||||||| ||||||| ||||| |||
Sbjct: 791 gtctggatgatggtgttgtgccacgggtcagacaggtgctgcagcaggttgtcgaagggc 732

                                           
Query: 158 cccttcccggtcacgttgtgctgcaccaggaa 189
           ||||||   |||||||||||||||||||||||
Sbjct: 731 cccttctgcgtcacgttgtgctgcaccaggaa 700
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>ref|XM_507584.1| PREDICTED Oryza sativa (japonica cultivar-group), P0413H11.35 mRNA
          Length = 1138

 Score =  111 bits (56), Expect = 8e-22
 Identities = 83/92 (90%)
 Strand = Plus / Minus

                                                                       
Query: 98  gtctggatgatggtgttgtgccatgggtcggccaggtgctgctgcaggttctcgaacggc 157
           ||||||||||||||||||||||| ||||| | |||||||||| ||||||| ||||| |||
Sbjct: 791 gtctggatgatggtgttgtgccacgggtcagacaggtgctgcagcaggttgtcgaagggc 732

                                           
Query: 158 cccttcccggtcacgttgtgctgcaccaggaa 189
           ||||||   |||||||||||||||||||||||
Sbjct: 731 cccttctgcgtcacgttgtgctgcaccaggaa 700
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>ref|XM_507583.1| PREDICTED Oryza sativa (japonica cultivar-group), P0413H11.35 mRNA
          Length = 1178

 Score =  111 bits (56), Expect = 8e-22
 Identities = 83/92 (90%)
 Strand = Plus / Minus

                                                                       
Query: 98  gtctggatgatggtgttgtgccatgggtcggccaggtgctgctgcaggttctcgaacggc 157
           ||||||||||||||||||||||| ||||| | |||||||||| ||||||| ||||| |||
Sbjct: 788 gtctggatgatggtgttgtgccacgggtcagacaggtgctgcagcaggttgtcgaagggc 729

                                           
Query: 158 cccttcccggtcacgttgtgctgcaccaggaa 189
           ||||||   |||||||||||||||||||||||
Sbjct: 728 cccttctgcgtcacgttgtgctgcaccaggaa 697
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>ref|XM_507582.1| PREDICTED Oryza sativa (japonica cultivar-group), P0413H11.35 mRNA
          Length = 1188

 Score =  111 bits (56), Expect = 8e-22
 Identities = 83/92 (90%)
 Strand = Plus / Minus

                                                                       
Query: 98  gtctggatgatggtgttgtgccatgggtcggccaggtgctgctgcaggttctcgaacggc 157
           ||||||||||||||||||||||| ||||| | |||||||||| ||||||| ||||| |||
Sbjct: 787 gtctggatgatggtgttgtgccacgggtcagacaggtgctgcagcaggttgtcgaagggc 728

                                           
Query: 158 cccttcccggtcacgttgtgctgcaccaggaa 189
           ||||||   |||||||||||||||||||||||
Sbjct: 727 cccttctgcgtcacgttgtgctgcaccaggaa 696
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>ref|XM_507239.2| PREDICTED Oryza sativa (japonica cultivar-group), P0413H11.35 mRNA
          Length = 1191

 Score =  111 bits (56), Expect = 8e-22
 Identities = 83/92 (90%)
 Strand = Plus / Minus

                                                                       
Query: 98  gtctggatgatggtgttgtgccatgggtcggccaggtgctgctgcaggttctcgaacggc 157
           ||||||||||||||||||||||| ||||| | |||||||||| ||||||| ||||| |||
Sbjct: 790 gtctggatgatggtgttgtgccacgggtcagacaggtgctgcagcaggttgtcgaagggc 731

                                           
Query: 158 cccttcccggtcacgttgtgctgcaccaggaa 189
           ||||||   |||||||||||||||||||||||
Sbjct: 730 cccttctgcgtcacgttgtgctgcaccaggaa 699
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>gb|AY445626.2| Oryza sativa (japonica cultivar-group) chlorophyll a/b binding
           protein presusor mRNA, complete cds; nuclear gene for
           chloroplast product
          Length = 1128

 Score =  111 bits (56), Expect = 8e-22
 Identities = 83/92 (90%)
 Strand = Plus / Minus

                                                                       
Query: 98  gtctggatgatggtgttgtgccatgggtcggccaggtgctgctgcaggttctcgaacggc 157
           ||||||||||||||||||||||| ||||| | |||||||||| ||||||| ||||| |||
Sbjct: 767 gtctggatgatggtgttgtgccacgggtcagacaggtgctgcagcaggttgtcgaagggc 708

                                           
Query: 158 cccttcccggtcacgttgtgctgcaccaggaa 189
           ||||||   |||||||||||||||||||||||
Sbjct: 707 cccttctgcgtcacgttgtgctgcaccaggaa 676
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  111 bits (56), Expect = 8e-22
 Identities = 83/92 (90%)
 Strand = Plus / Plus

                                                                            
Query: 98       gtctggatgatggtgttgtgccatgggtcggccaggtgctgctgcaggttctcgaacggc 157
                ||||||||||||||||||||||| ||||| | |||||||||| ||||||| ||||| |||
Sbjct: 21164438 gtctggatgatggtgttgtgccacgggtcagacaggtgctgcagcaggttgtcgaagggc 21164497

                                                
Query: 158      cccttcccggtcacgttgtgctgcaccaggaa 189
                ||||||   |||||||||||||||||||||||
Sbjct: 21164498 cccttctgcgtcacgttgtgctgcaccaggaa 21164529
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>dbj|AP005757.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0413H11
          Length = 147655

 Score =  111 bits (56), Expect = 8e-22
 Identities = 83/92 (90%)
 Strand = Plus / Plus

                                                                          
Query: 98     gtctggatgatggtgttgtgccatgggtcggccaggtgctgctgcaggttctcgaacggc 157
              ||||||||||||||||||||||| ||||| | |||||||||| ||||||| ||||| |||
Sbjct: 135648 gtctggatgatggtgttgtgccacgggtcagacaggtgctgcagcaggttgtcgaagggc 135707

                                              
Query: 158    cccttcccggtcacgttgtgctgcaccaggaa 189
              ||||||   |||||||||||||||||||||||
Sbjct: 135708 cccttctgcgtcacgttgtgctgcaccaggaa 135739
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>dbj|AK104499.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-E04, full
           insert sequence
          Length = 1140

 Score =  111 bits (56), Expect = 8e-22
 Identities = 83/92 (90%)
 Strand = Plus / Minus

                                                                       
Query: 98  gtctggatgatggtgttgtgccatgggtcggccaggtgctgctgcaggttctcgaacggc 157
           ||||||||||||||||||||||| ||||| | |||||||||| ||||||| ||||| |||
Sbjct: 791 gtctggatgatggtgttgtgccacgggtcagacaggtgctgcagcaggttgtcgaagggc 732

                                           
Query: 158 cccttcccggtcacgttgtgctgcaccaggaa 189
           ||||||   |||||||||||||||||||||||
Sbjct: 731 cccttctgcgtcacgttgtgctgcaccaggaa 700
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>dbj|AK104416.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-204-G03, full
           insert sequence
          Length = 1177

 Score =  111 bits (56), Expect = 8e-22
 Identities = 83/92 (90%)
 Strand = Plus / Minus

                                                                       
Query: 98  gtctggatgatggtgttgtgccatgggtcggccaggtgctgctgcaggttctcgaacggc 157
           ||||||||||||||||||||||| ||||| | |||||||||| ||||||| ||||| |||
Sbjct: 788 gtctggatgatggtgttgtgccacgggtcagacaggtgctgcagcaggttgtcgaagggc 729

                                           
Query: 158 cccttcccggtcacgttgtgctgcaccaggaa 189
           ||||||   |||||||||||||||||||||||
Sbjct: 728 cccttctgcgtcacgttgtgctgcaccaggaa 697
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>dbj|AK103921.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-B07, full
           insert sequence
          Length = 1193

 Score =  111 bits (56), Expect = 8e-22
 Identities = 83/92 (90%)
 Strand = Plus / Minus

                                                                       
Query: 98  gtctggatgatggtgttgtgccatgggtcggccaggtgctgctgcaggttctcgaacggc 157
           ||||||||||||||||||||||| ||||| | |||||||||| ||||||| ||||| |||
Sbjct: 792 gtctggatgatggtgttgtgccacgggtcagacaggtgctgcagcaggttgtcgaagggc 733

                                           
Query: 158 cccttcccggtcacgttgtgctgcaccaggaa 189
           ||||||   |||||||||||||||||||||||
Sbjct: 732 cccttctgcgtcacgttgtgctgcaccaggaa 701
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>dbj|AK067809.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013121A03, full
           insert sequence
          Length = 1190

 Score =  111 bits (56), Expect = 8e-22
 Identities = 83/92 (90%)
 Strand = Plus / Minus

                                                                       
Query: 98  gtctggatgatggtgttgtgccatgggtcggccaggtgctgctgcaggttctcgaacggc 157
           ||||||||||||||||||||||| ||||| | |||||||||| ||||||| ||||| |||
Sbjct: 789 gtctggatgatggtgttgtgccacgggtcagacaggtgctgcagcaggttgtcgaagggc 730

                                           
Query: 158 cccttcccggtcacgttgtgctgcaccaggaa 189
           ||||||   |||||||||||||||||||||||
Sbjct: 729 cccttctgcgtcacgttgtgctgcaccaggaa 698
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>dbj|AK067712.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013120A20, full
           insert sequence
          Length = 1138

 Score =  111 bits (56), Expect = 8e-22
 Identities = 83/92 (90%)
 Strand = Plus / Minus

                                                                       
Query: 98  gtctggatgatggtgttgtgccatgggtcggccaggtgctgctgcaggttctcgaacggc 157
           ||||||||||||||||||||||| ||||| | |||||||||| ||||||| ||||| |||
Sbjct: 791 gtctggatgatggtgttgtgccacgggtcagacaggtgctgcagcaggttgtcgaagggc 732

                                           
Query: 158 cccttcccggtcacgttgtgctgcaccaggaa 189
           ||||||   |||||||||||||||||||||||
Sbjct: 731 cccttctgcgtcacgttgtgctgcaccaggaa 700
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>dbj|AK060222.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-002-F08, full
           insert sequence
          Length = 1078

 Score =  111 bits (56), Expect = 8e-22
 Identities = 83/92 (90%)
 Strand = Plus / Minus

                                                                       
Query: 98  gtctggatgatggtgttgtgccatgggtcggccaggtgctgctgcaggttctcgaacggc 157
           ||||||||||||||||||||||| ||||| | |||||||||| ||||||| ||||| |||
Sbjct: 796 gtctggatgatggtgttgtgccacgggtcagacaggtgctgcagcaggttgtcgaagggc 737

                                           
Query: 158 cccttcccggtcacgttgtgctgcaccaggaa 189
           ||||||   |||||||||||||||||||||||
Sbjct: 736 cccttctgcgtcacgttgtgctgcaccaggaa 705
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>gb|AF094775.1|AF094775 Oryza sativa chlorophyll a/b-binding protein presursor (Cab27)
           mRNA, nuclear gene encoding chloroplast protein,
           complete cds
          Length = 1162

 Score =  111 bits (56), Expect = 8e-22
 Identities = 83/92 (90%)
 Strand = Plus / Minus

                                                                       
Query: 98  gtctggatgatggtgttgtgccatgggtcggccaggtgctgctgcaggttctcgaacggc 157
           ||||||||||||||||||||||| ||||| | |||||||||| ||||||| ||||| |||
Sbjct: 754 gtctggatgatggtgttgtgccacgggtcagacaggtgctgcagcaggttgtcgaagggc 695

                                           
Query: 158 cccttcccggtcacgttgtgctgcaccaggaa 189
           ||||||   |||||||||||||||||||||||
Sbjct: 694 cccttctgcgtcacgttgtgctgcaccaggaa 663
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>ref|XM_482573.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 576

 Score = 99.6 bits (50), Expect = 3e-18
 Identities = 77/86 (89%)
 Strand = Plus / Plus

                                                                       
Query: 104 atgatggtgttgtgccatgggtcggccaggtgctgctgcaggttctcgaacggccccttc 163
           ||||||||||||||||| ||||| | |||||||||| ||||||| ||||| |||||||||
Sbjct: 1   atgatggtgttgtgccacgggtcagacaggtgctgcagcaggttgtcgaagggccccttc 60

                                     
Query: 164 ccggtcacgttgtgctgcaccaggaa 189
              |||||||||||||||||||||||
Sbjct: 61  tgcgtcacgttgtgctgcaccaggaa 86
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>emb|X57706.1|LECAB11 L.esculentum DNA for CAB11 gene
          Length = 1393

 Score = 77.8 bits (39), Expect = 1e-11
 Identities = 72/83 (86%)
 Strand = Plus / Minus

                                                                        
Query: 101  tggatgatggtgttgtgccatgggtcggccaggtgctgctgcaggttctcgaacggcccc 160
            |||||||||||||||||||||||||| |  ||||||||| | ||||| || || || |||
Sbjct: 1192 tggatgatggtgttgtgccatgggtcagagaggtgctgcagaaggttgtcaaaaggtccc 1133

                                   
Query: 161  ttcccggtcacgttgtgctgcac 183
            ||||| ||||| |||||||||||
Sbjct: 1132 ttcccagtcacattgtgctgcac 1110
to top
>gb|AY233205.1| Vitis vinifera chlorophyll a/b-binding protein (Lhca1) mRNA,
           partial cds; nuclear gene for chloroplast product
          Length = 476

 Score = 52.0 bits (26), Expect = 6e-04
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                     
Query: 101 tggatgatggtgttgtgccatgggtc 126
           ||||||||||||||||||||||||||
Sbjct: 273 tggatgatggtgttgtgccatgggtc 248
to top
>emb|AJ579711.2|BVU579711 Beta vulgaris mRNA for chloroplast chlorophyll a/b binding protein
           (cab11 gene)
          Length = 1062

 Score = 52.0 bits (26), Expect = 6e-04
 Identities = 71/86 (82%)
 Strand = Plus / Minus

                                                                       
Query: 98  gtctggatgatggtgttgtgccatgggtcggccaggtgctgctgcaggttctcgaacggc 157
           ||||| || |||||||||||||||||||| |  || |||||| | ||||| || || |||
Sbjct: 857 gtctgaataatggtgttgtgccatgggtctgatagatgctgcagaaggttatcaaaaggc 798

                                     
Query: 158 cccttcccggtcacgttgtgctgcac 183
           ||||| || ||||| ||||| |||||
Sbjct: 797 ccctttccagtcacattgtgttgcac 772
to top
>gb|BC002118.1| Mus musculus cDNA clone MGC:6623 IMAGE:3491066, complete cds
          Length = 1008

 Score = 52.0 bits (26), Expect = 6e-04
 Identities = 71/86 (82%)
 Strand = Plus / Minus

                                                                       
Query: 98  gtctggatgatggtgttgtgccatgggtcggccaggtgctgctgcaggttctcgaacggc 157
           ||||| || |||||||||||||||||||| |  || |||||| | ||||| || || |||
Sbjct: 773 gtctgaataatggtgttgtgccatgggtctgatagatgctgcagaaggttatcaaaaggc 714

                                     
Query: 158 cccttcccggtcacgttgtgctgcac 183
           ||||| || ||||| ||||| |||||
Sbjct: 713 ccctttccagtcacattgtgttgcac 688
to top
>gb|AY109341.1| Zea mays CL4601_3 mRNA sequence
          Length = 1460

 Score = 48.1 bits (24), Expect = 0.010
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 97  ggtctggatgatggtgttgtgcca 120
           ||||||||||||||||||||||||
Sbjct: 280 ggtctggatgatggtgttgtgcca 303
to top
>emb|X82497.1|NTCAG4 N.tabacum mRNA for light-harvesting Ch1 a/b binding protein
          Length = 726

 Score = 44.1 bits (22), Expect = 0.15
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 107 atggtgttgtgccatgggtcgg 128
           ||||||||||||||||||||||
Sbjct: 581 atggtgttgtgccatgggtcgg 560
to top
>emb|Z17226.1|PSLHCA411 Pinus sylvestris Lhca4*1-1 gene encoding Lhca4 protein (type 4
           protein of light-harvesting complex of photosystem I)
          Length = 1013

 Score = 42.1 bits (21), Expect = 0.60
 Identities = 63/77 (81%)
 Strand = Plus / Minus

                                                                       
Query: 107 atggtgttgtgccatgggtcggccaggtgctgctgcaggttctcgaacggccccttcccg 166
           ||||||||||||||||| || | ||| || ||| ||| ||| |||||||| ||||| || 
Sbjct: 735 atggtgttgtgccatggatcagacagatgttgcagcaagttgtcgaacgggccctttcct 676

                            
Query: 167 gtcacgttgtgctgcac 183
           || || ||||| |||||
Sbjct: 675 gttacattgtgttgcac 659
to top
>emb|Z16409.1|PSLHCA412 P.sylvestris Lhca4*1-2 mRNA encoding Lhca4 protein (type 4 protein
           of light-harvesting complex of photosystem I) (partial)
          Length = 968

 Score = 42.1 bits (21), Expect = 0.60
 Identities = 63/77 (81%)
 Strand = Plus / Minus

                                                                       
Query: 107 atggtgttgtgccatgggtcggccaggtgctgctgcaggttctcgaacggccccttcccg 166
           ||||||||||||||||| || | ||| || ||| ||| ||| |||||||| ||||| || 
Sbjct: 712 atggtgttgtgccatggatcagacagatgttgcagcaagttgtcgaacgggccctttcct 653

                            
Query: 167 gtcacgttgtgctgcac 183
           || || ||||| |||||
Sbjct: 652 gttacattgtgttgcac 636
to top
>emb|AJ309094.1|PPI309094 Pinus pinaster mRNA for putative chlorophyll a/b-binding protein
           type 4
          Length = 819

 Score = 42.1 bits (21), Expect = 0.60
 Identities = 63/77 (81%)
 Strand = Plus / Minus

                                                                       
Query: 107 atggtgttgtgccatgggtcggccaggtgctgctgcaggttctcgaacggccccttcccg 166
           ||||||||||||||||| || | ||| || ||| ||| ||| |||||||| ||||| || 
Sbjct: 743 atggtgttgtgccatggatcagacagatgttgcagcaagttgtcgaacgggccctttcct 684

                            
Query: 167 gtcacgttgtgctgcac 183
           || || ||||| |||||
Sbjct: 683 gttacattgtgttgcac 667
to top
>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence
          Length = 2094509

 Score = 42.1 bits (21), Expect = 0.60
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 94     gatggtctggatgatggtgtt 114
              |||||||||||||||||||||
Sbjct: 631602 gatggtctggatgatggtgtt 631582
to top
>ref|NM_188089.1| Oryza sativa (japonica cultivar-group), Ozsa8521 predicted mRNA
          Length = 1089

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 90   cggagatggtctggatgatggtgttgtg 117
            ||||||||||||||| ||||| ||||||
Sbjct: 1009 cggagatggtctggaggatggcgttgtg 982
to top
>ref|XM_535195.2| PREDICTED: Canis familiaris similar to inter-alpha globulin
           inhibitor H2 polypeptide (LOC478011), mRNA
          Length = 2941

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 96  tggtctggatgatggtgttg 115
           ||||||||||||||||||||
Sbjct: 377 tggtctggatgatggtgttg 358
to top
>emb|AL445243.3| Human DNA sequence from clone RP11-538C21 on chromosome 13 Contains a
              novel gene, complete sequence
          Length = 150937

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 26     ccaaaataataattcagaac 45
              ||||||||||||||||||||
Sbjct: 123758 ccaaaataataattcagaac 123777
to top
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 97     ggtctggatgatggtgttgt 116
              ||||||||||||||||||||
Sbjct: 172999 ggtctggatgatggtgttgt 172980
to top
>gb|AC084016.12| Homo sapiens 3 BAC RP11-190F16 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 191524

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 28    aaaataataattcagaacca 47
             ||||||||||||||||||||
Sbjct: 31846 aaaataataattcagaacca 31827
to top
>dbj|AB189167.1| Oryza sativa (japonica cultivar-group) OsIDHa mRNA for NAD-dependent
            isocitrate dehydrogenase a, complete cds
          Length = 1424

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 90   cggagatggtctggatgatggtgttgtg 117
            ||||||||||||||| ||||| ||||||
Sbjct: 1135 cggagatggtctggaggatggcgttgtg 1108
to top
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 125    tcggccaggtgctgctgcag 144
              ||||||||||||||||||||
Sbjct: 665703 tcggccaggtgctgctgcag 665722
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 90      cggagatggtctggatgatggtgttgtg 117
               ||||||||||||||| ||||| ||||||
Sbjct: 9668714 cggagatggtctggaggatggcgttgtg 9668687
to top
>dbj|AP000836.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
              clone:P0038F12
          Length = 190014

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 90     cggagatggtctggatgatggtgttgtg 117
              ||||||||||||||| ||||| ||||||
Sbjct: 106717 cggagatggtctggaggatggcgttgtg 106690
to top
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 89      ccggagatggtctggatgatggtg 112
               ||||||||||||||||||| ||||
Sbjct: 5018847 ccggagatggtctggatgagggtg 5018824
to top
>dbj|AK059596.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-030-D11, full
            insert sequence
          Length = 1522

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 90   cggagatggtctggatgatggtgttgtg 117
            ||||||||||||||| ||||| ||||||
Sbjct: 1149 cggagatggtctggaggatggcgttgtg 1122
to top
>gb|AF082100.1|AF082100 Streptomyces sp. MA6548 FK506 peptide synthetase (fkbP), FK506
            oxidase (fkbO), and FK506 polyketide synthase (fkbB)
            genes, complete cds
          Length = 28732

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 123  ggtcggccaggtgctgctgcaggt 146
            ||||| ||||||||||||||||||
Sbjct: 3454 ggtcgtccaggtgctgctgcaggt 3431
to top
>emb|CT030126.6| Mouse DNA sequence from clone RP23-430F12 on chromosome 12, complete
             sequence
          Length = 208848

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 25    cccaaaataataattcagaa 44
             ||||||||||||||||||||
Sbjct: 45751 cccaaaataataattcagaa 45732
to top
>gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome
          Length = 2560265

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 169    cacgttgtgctgcaccagg 187
              |||||||||||||||||||
Sbjct: 140118 cacgttgtgctgcaccagg 140100
to top
>gb|AC166040.3| Mus musculus 6 BAC RP24-538P5 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 200847

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 130    caggtgctgctgcaggttc 148
              |||||||||||||||||||
Sbjct: 109535 caggtgctgctgcaggttc 109553
to top
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 125     tcggccaggtgctgctgca 143
               |||||||||||||||||||
Sbjct: 4750741 tcggccaggtgctgctgca 4750759
to top
>ref|XM_743018.1| Aspergillus fumigatus Af293 alpha/beta hydrolase (Afu5g02310)
           partial mRNA
          Length = 1032

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 135 gctgctgcaggttctcgaa 153
           |||||||||||||||||||
Sbjct: 565 gctgctgcaggttctcgaa 547
to top
>emb|AL611933.30| Human DNA sequence from clone RP11-374C13 on chromosome 1 Contains a
              eukaryotic translation elongation factor 1 delta (guanine
              nucleotide exchange protein) (EEF1D) pseudogene, complete
              sequence
          Length = 141273

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 127    ggccaggtgctgctgcaggttct 149
              ||||||| |||||||||||||||
Sbjct: 113550 ggccaggagctgctgcaggttct 113572
to top
>emb|AL939117.1|SCO939117 Streptomyces coelicolor A3(2) complete genome; segment 14/29
          Length = 309050

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 123    ggtcggccaggtgctgctg 141
              |||||||||||||||||||
Sbjct: 111401 ggtcggccaggtgctgctg 111383
to top
>emb|BX469902.7| Zebrafish DNA sequence from clone CH211-277G23 in linkage group 9,
             complete sequence
          Length = 179135

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 23    accccaaaataataattca 41
             |||||||||||||||||||
Sbjct: 16904 accccaaaataataattca 16922
to top
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome
          Length = 4940217

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 125    tcggccaggtgctgctgca 143
              |||||||||||||||||||
Sbjct: 374550 tcggccaggtgctgctgca 374532
to top
>dbj|AK126180.1| Homo sapiens cDNA FLJ44192 fis, clone THYMU2039780
          Length = 2364

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 127 ggccaggtgctgctgcagg 145
           |||||||||||||||||||
Sbjct: 316 ggccaggtgctgctgcagg 298
to top
>gb|AE012055.1| Xanthomonas axonopodis pv. citri str. 306,  section 433 of 469 of
           the complete genome
          Length = 11196

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 125 tcggccaggtgctgctgca 143
           |||||||||||||||||||
Sbjct: 222 tcggccaggtgctgctgca 240
to top
>gb|AE012266.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 174
            of 460 of the complete genome
          Length = 10561

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 124  gtcggccaggtgctgctgc 142
            |||||||||||||||||||
Sbjct: 7679 gtcggccaggtgctgctgc 7661
to top
>ref|XM_928231.1| PREDICTED: Homo sapiens hypothetical protein LOC643109, transcript
           variant 1 (LOC643109), mRNA
          Length = 2361

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 127 ggccaggtgctgctgcagg 145
           |||||||||||||||||||
Sbjct: 310 ggccaggtgctgctgcagg 292
to top
>ref|XM_932687.1| PREDICTED: Homo sapiens hypothetical protein LOC643109, transcript
           variant 2 (LOC643109), mRNA
          Length = 2361

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 127 ggccaggtgctgctgcagg 145
           |||||||||||||||||||
Sbjct: 310 ggccaggtgctgctgcagg 292
to top
>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 123     ggtcggccaggtgctgctg 141
               |||||||||||||||||||
Sbjct: 1462745 ggtcggccaggtgctgctg 1462763
to top
>gb|DQ311211.1| Bombyx mori proteasome zeta subunit mRNA, complete cds
          Length = 1827

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 27   caaaataataattcagaac 45
            |||||||||||||||||||
Sbjct: 1186 caaaataataattcagaac 1204
to top
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 124     gtcggccaggtgctgctgc 142
               |||||||||||||||||||
Sbjct: 3114643 gtcggccaggtgctgctgc 3114661
to top
>gb|AC137526.1| Homo sapiens chromosome 16 clone LA16c-444G7, complete sequence
          Length = 28927

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 127  ggccaggtgctgctgcagg 145
            |||||||||||||||||||
Sbjct: 7384 ggccaggtgctgctgcagg 7366
to top
>gb|AC133781.4| Homo sapiens BAC clone RP11-756K13 from 2, complete sequence
          Length = 185571

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 127   ggccaggtgctgctgcagg 145
             |||||||||||||||||||
Sbjct: 95010 ggccaggtgctgctgcagg 95028
to top
>gb|AC133528.4| Homo sapiens BAC clone RP11-367H1 from 2, complete sequence
          Length = 151700

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 127   ggccaggtgctgctgcagg 145
             |||||||||||||||||||
Sbjct: 34145 ggccaggtgctgctgcagg 34127
to top
>gb|AE004440.1| Pseudomonas aeruginosa PAO1, section 1 of 529 of the complete genome
          Length = 13517

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 85    ttggccggagatggtctggatga 107
             |||||||| ||||||||||||||
Sbjct: 12126 ttggccggcgatggtctggatga 12148
to top
>gb|AY144442.1| Sorghum bicolor BAC 95A23/98N8.1 Rph region, partial sequence
          Length = 268433

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 100   ctggatgatggtgttgtgc 118
             |||||||||||||||||||
Sbjct: 94146 ctggatgatggtgttgtgc 94128
to top
>gb|AC114730.5| Homo sapiens BAC clone RP13-925E23 from 2, complete sequence
          Length = 193894

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 127    ggccaggtgctgctgcagg 145
              |||||||||||||||||||
Sbjct: 166154 ggccaggtgctgctgcagg 166136
to top
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 126     cggccaggtgctgctgcag 144
               |||||||||||||||||||
Sbjct: 3159828 cggccaggtgctgctgcag 3159810
to top
>gb|AC116703.10| Mus musculus chromosome 6, clone RP23-16O17, complete sequence
          Length = 202915

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 104    atgatggtgttgtgccatgggtc 126
              ||||||||||| |||||||||||
Sbjct: 104569 atgatggtgttttgccatgggtc 104547
to top
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome
          Length = 4941439

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 125    tcggccaggtgctgctgca 143
              |||||||||||||||||||
Sbjct: 386656 tcggccaggtgctgctgca 386638
to top
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 126     cggccaggtgctgctgcag 144
               |||||||||||||||||||
Sbjct: 4672008 cggccaggtgctgctgcag 4672026
to top
>gb|AC139323.4| Mus musculus BAC clone RP24-383P22 from 13, complete sequence
          Length = 231965

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 41    agaaccacctgaaacctcc 59
             |||||||||||||||||||
Sbjct: 77225 agaaccacctgaaacctcc 77207
to top
>emb|AL807385.11| Mouse DNA sequence from clone RP23-143B14 on chromosome 4, complete
             sequence
          Length = 221319

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 127   ggccaggtgctgctgcagg 145
             |||||||||||||||||||
Sbjct: 64601 ggccaggtgctgctgcagg 64583
to top
>emb|AL671911.12| Mouse DNA sequence from clone RP23-250F8 on chromosome X, complete
              sequence
          Length = 213401

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 99     tctggatgatggtgttgtg 117
              |||||||||||||||||||
Sbjct: 183401 tctggatgatggtgttgtg 183383


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,809,222
Number of Sequences: 3902068
Number of extensions: 1809222
Number of successful extensions: 118847
Number of sequences better than 10.0: 71
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 117631
Number of HSP's gapped (non-prelim): 1215
length of query: 189
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 167
effective length of database: 17,147,199,772
effective search space: 2863582361924
effective search space used: 2863582361924
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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