>SYI_GLUOX (Q5FRI6) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
            ligase) (IleRS)
          Length = 960

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +3

Query: 222  PGGDVHAGSRCARARRVTLLSC*RWRLLPRVGKNSSLPQHC 344
            PG   H G +  RA       C  W++LP VG+N+  P  C
Sbjct: 913  PGDTAHGGPQVERAPGHKCARC--WKVLPEVGENTEHPALC 951

>RECA_CHLMU (Q9PLS6) Protein recA (Recombinase A)|
          Length = 354

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
 Frame = +3

Query: 111 IRLPEC-----SMAPAVAKDGSVPVLGPGSLYLSFPPGSLRGPGGDVHAG 245
           I  P+C     S+A  +A+ G+V V+   S+    P   L G  GDVH G
Sbjct: 117 ISQPDCGEDALSIAELLARSGAVDVIVIDSVAALVPKSELEGEIGDVHVG 166

>RAG1_ONCMY (Q91187) V(D)J recombination-activating protein 1 (RAG-1)|
          Length = 1073

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -3

Query: 328 EEFLPTRGNKRHRQQLKRVTRRARAHRL 245
           + FLP     R RQ L  +TRRA+ HRL
Sbjct: 413 DNFLPVNKGGRPRQHLLSLTRRAQKHRL 440

>RECA_CHLTR (P48287) Protein recA (Recombinase A)|
          Length = 352

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
 Frame = +3

Query: 111 IRLPEC-----SMAPAVAKDGSVPVLGPGSLYLSFPPGSLRGPGGDVHAG 245
           I  P+C     S+A  +A+ G+V V+   S+    P   L G  GDVH G
Sbjct: 117 ISQPDCGEDALSIAELLARSGAVDVIVIDSVAALVPKSELEGEIGDVHVG 166

>RECA_CHLAB (Q5L4P3) Protein recA (Recombinase A)|
          Length = 349

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
 Frame = +3

Query: 111 IRLPEC-----SMAPAVAKDGSVPVLGPGSLYLSFPPGSLRGPGGDVHAG 245
           I  P+C     S+A  +A+ G+V V+   S+    P   L G  GDVH G
Sbjct: 117 ISQPDCGEDALSIAELLARSGAVDVIVIDSVAALVPKSELEGDIGDVHVG 166

>RECA_CHLPN (Q9Z7E4) Protein recA (Recombinase A)|
          Length = 353

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
 Frame = +3

Query: 111 IRLPEC-----SMAPAVAKDGSVPVLGPGSLYLSFPPGSLRGPGGDVHAG 245
           I  P+C     S+A  +A+ G+V V+   S+    P   L G  GDVH G
Sbjct: 117 ISQPDCGEDALSIAELLARSGAVDVIVIDSVAALVPKSELEGDIGDVHVG 166

>RECA_CHLCV (Q821E6) Protein recA (Recombinase A)|
          Length = 350

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
 Frame = +3

Query: 111 IRLPEC-----SMAPAVAKDGSVPVLGPGSLYLSFPPGSLRGPGGDVHAG 245
           I  P+C     S+A  +A+ G+V V+   S+    P   L G  GDVH G
Sbjct: 117 ISQPDCGEDALSIAELLARSGAVDVIVIDSVAALVPKSELEGDIGDVHVG 166

>CELR3_HUMAN (Q9NYQ7) Cadherin EGF LAG seven-pass G-type receptor 3 precursor|
            (Flamingo homolog 1) (hFmi1) (Multiple epidermal growth
            factor-like domains 2) (Epidermal growth factor-like 1)
          Length = 3312

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 14/35 (40%), Positives = 16/35 (45%)
 Frame = -1

Query: 282  LRESHGVHERIDCRHEHRLRGLSNCRVGRRGTMNL 178
            L E HGV    DC   HR    + CR  R GT  +
Sbjct: 2488 LAEQHGVWTARDCELVHRNGSHARCRCSRTGTFGV 2522

>COIA1_HUMAN (P39060) Collagen alpha-1(XVIII) chain precursor [Contains:|
           Endostatin]
          Length = 1516

 Score = 24.3 bits (51), Expect(2) = 7.9
 Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
 Frame = +3

Query: 123 ECSMAPAVAKDGSVPVLG----PGSLYLSFPPGSLRGPGGDVHAG 245
           E S +  V +  +V  LG    PGS  +S   GS+R PGG V  G
Sbjct: 472 EDSRSEEVEEQTTVASLGAQTLPGSDSVSTWDGSVRTPGGRVKEG 516



 Score = 23.1 bits (48), Expect(2) = 7.9
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +1

Query: 355 RAGPPTRTRQQSPPHLQCHGMPL 423
           RAGPP       PP L C   PL
Sbjct: 533 RAGPPGSPCLPGPPGLPCPVSPL 555


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,204,079
Number of Sequences: 219361
Number of extensions: 1786755
Number of successful extensions: 5261
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5029
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5259
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 3970331829
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)