ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd25k15
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY591012.1| Zea mays cultivar re1 alcohol dehydrogenase 1 (ad... 40 3.8
2gb|AY591011.1| Zea mays cultivar r67 alcohol dehydrogenase 1 (ad... 40 3.8
3gb|AY591010.1| Zea mays cultivar r03 alcohol dehydrogenase 1 (ad... 40 3.8
4gb|AY591009.1| Zea mays cultivar p38 alcohol dehydrogenase 1 (ad... 40 3.8
5gb|AY591008.1| Zea mays cultivar mko alcohol dehydrogenase 1 (ad... 40 3.8
6gb|AY591007.1| Zea mays cultivar k76 alcohol dehydrogenase 1 (ad... 40 3.8
7gb|AY591006.1| Zea mays cultivar k29 alcohol dehydrogenase 1 (ad... 40 3.8
8gb|AY591005.1| Zea mays cultivar j40 alcohol dehydrogenase 1 (ad... 40 3.8
9gb|AY591004.1| Zea mays cultivar ivana alcohol dehydrogenase 1 (... 40 3.8
10gb|AY591003.1| Zea mays cultivar hb9 alcohol dehydrogenase 1 (ad... 40 3.8
11gb|AY591002.1| Zea mays cultivar H99 alcohol dehydrogenase 1 (ad... 40 3.8
12gb|AY591001.1| Zea mays cultivar H60 alcohol dehydrogenase 1 (ad... 40 3.8
13gb|AY591000.1| Zea mays cultivar g80 alcohol dehydrogenase 1 (ad... 40 3.8
14gb|AY590999.1| Zea mays cultivar g48 alcohol dehydrogenase 1 (ad... 40 3.8
15gb|AY590998.1| Zea mays cultivar g42 alcohol dehydrogenase 1 (ad... 40 3.8
16gb|AY590997.1| Zea mays cultivar g39 alcohol dehydrogenase 1 (ad... 40 3.8
17gb|AY590996.1| Zea mays cultivar co109 alcohol dehydrogenase 1 (... 40 3.8
18gb|AY590995.1| Zea mays cultivar b84 alcohol dehydrogenase 1 (ad... 40 3.8
19gb|AY590994.1| Zea mays cultivar B73 alcohol dehydrogenase 1 (ad... 40 3.8
20gb|AY590993.1| Zea mays cultivar 805 alcohol dehydrogenase 1 (ad... 40 3.8
21gb|AY590992.1| Zea mays cultivar 647 alcohol dehydrogenase 1 (ad... 40 3.8
22gb|AY590991.1| Zea mays cultivar 595 alcohol dehydrogenase 1 (ad... 40 3.8
23gb|AY590990.1| Zea mays cultivar 207 alcohol dehydrogenase 1 (ad... 40 3.8
24gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, comp... 40 3.8
25emb|AL390027.11| Human DNA sequence from clone RP11-368G3 on chr... 40 3.8
26emb|AL157762.13| Human DNA sequence from clone RP11-153I24 on ch... 40 3.8
27gb|AC107326.4| Drosophila melanogaster X BAC RP98-33A8 (Roswell ... 40 3.8
28gb|AC091202.3| Drosophila melanogaster 3L BAC RP98-30A3 (Roswell... 40 3.8
29gb|AF479264.1| Homo sapiens ligase IV, DNA, ATP-dependent (LIG4)... 40 3.8
30gb|AF123535.1| Zea mays alcohol dehydrogenase 1 (adh1) gene, adh... 40 3.8
31gb|AE003563.4| Drosophila melanogaster chromosome 3L, section 22... 40 3.8
32gb|AE003421.2| Drosophila melanogaster chromosome X, section 5 o... 40 3.8
33gb|AY691949.1| Zea mays alcohol dehydrogenase 1 (adh1A) gene, co... 40 3.8

>gb|AY591012.1| Zea mays cultivar re1 alcohol dehydrogenase 1 (adh1) gene, partial
           sequence
          Length = 524

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 166 cggtgtttccaaatcatcca 185
           ||||||||||||||||||||
Sbjct: 303 cggtgtttccaaatcatcca 284



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>gb|AY591011.1| Zea mays cultivar r67 alcohol dehydrogenase 1 (adh1) gene, partial
           sequence
          Length = 526

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 166 cggtgtttccaaatcatcca 185
           ||||||||||||||||||||
Sbjct: 305 cggtgtttccaaatcatcca 286



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>gb|AY591010.1| Zea mays cultivar r03 alcohol dehydrogenase 1 (adh1) gene, partial
           sequence
          Length = 527

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 166 cggtgtttccaaatcatcca 185
           ||||||||||||||||||||
Sbjct: 306 cggtgtttccaaatcatcca 287



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>gb|AY591009.1| Zea mays cultivar p38 alcohol dehydrogenase 1 (adh1) gene, partial
           sequence
          Length = 527

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 166 cggtgtttccaaatcatcca 185
           ||||||||||||||||||||
Sbjct: 306 cggtgtttccaaatcatcca 287



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>gb|AY591008.1| Zea mays cultivar mko alcohol dehydrogenase 1 (adh1) gene, partial
           sequence
          Length = 527

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 166 cggtgtttccaaatcatcca 185
           ||||||||||||||||||||
Sbjct: 306 cggtgtttccaaatcatcca 287



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>gb|AY591007.1| Zea mays cultivar k76 alcohol dehydrogenase 1 (adh1) gene, partial
           sequence
          Length = 527

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 166 cggtgtttccaaatcatcca 185
           ||||||||||||||||||||
Sbjct: 306 cggtgtttccaaatcatcca 287



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>gb|AY591006.1| Zea mays cultivar k29 alcohol dehydrogenase 1 (adh1) gene, partial
           sequence
          Length = 528

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 166 cggtgtttccaaatcatcca 185
           ||||||||||||||||||||
Sbjct: 307 cggtgtttccaaatcatcca 288



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>gb|AY591005.1| Zea mays cultivar j40 alcohol dehydrogenase 1 (adh1) gene, partial
           sequence
          Length = 527

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 166 cggtgtttccaaatcatcca 185
           ||||||||||||||||||||
Sbjct: 306 cggtgtttccaaatcatcca 287



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>gb|AY591004.1| Zea mays cultivar ivana alcohol dehydrogenase 1 (adh1) gene,
           partial sequence
          Length = 527

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 166 cggtgtttccaaatcatcca 185
           ||||||||||||||||||||
Sbjct: 306 cggtgtttccaaatcatcca 287



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>gb|AY591003.1| Zea mays cultivar hb9 alcohol dehydrogenase 1 (adh1) gene, partial
           sequence
          Length = 527

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 166 cggtgtttccaaatcatcca 185
           ||||||||||||||||||||
Sbjct: 306 cggtgtttccaaatcatcca 287



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>gb|AY591002.1| Zea mays cultivar H99 alcohol dehydrogenase 1 (adh1) gene, partial
           sequence
          Length = 526

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 166 cggtgtttccaaatcatcca 185
           ||||||||||||||||||||
Sbjct: 305 cggtgtttccaaatcatcca 286



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>gb|AY591001.1| Zea mays cultivar H60 alcohol dehydrogenase 1 (adh1) gene, partial
           sequence
          Length = 527

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 166 cggtgtttccaaatcatcca 185
           ||||||||||||||||||||
Sbjct: 306 cggtgtttccaaatcatcca 287



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>gb|AY591000.1| Zea mays cultivar g80 alcohol dehydrogenase 1 (adh1) gene, partial
           sequence
          Length = 526

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 166 cggtgtttccaaatcatcca 185
           ||||||||||||||||||||
Sbjct: 305 cggtgtttccaaatcatcca 286



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>gb|AY590999.1| Zea mays cultivar g48 alcohol dehydrogenase 1 (adh1) gene, partial
           sequence
          Length = 528

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 166 cggtgtttccaaatcatcca 185
           ||||||||||||||||||||
Sbjct: 307 cggtgtttccaaatcatcca 288



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>gb|AY590998.1| Zea mays cultivar g42 alcohol dehydrogenase 1 (adh1) gene, partial
           sequence
          Length = 524

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 166 cggtgtttccaaatcatcca 185
           ||||||||||||||||||||
Sbjct: 303 cggtgtttccaaatcatcca 284



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>gb|AY590997.1| Zea mays cultivar g39 alcohol dehydrogenase 1 (adh1) gene, partial
           sequence
          Length = 528

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 166 cggtgtttccaaatcatcca 185
           ||||||||||||||||||||
Sbjct: 307 cggtgtttccaaatcatcca 288



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>gb|AY590996.1| Zea mays cultivar co109 alcohol dehydrogenase 1 (adh1) gene,
           partial sequence
          Length = 527

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 166 cggtgtttccaaatcatcca 185
           ||||||||||||||||||||
Sbjct: 306 cggtgtttccaaatcatcca 287



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>gb|AY590995.1| Zea mays cultivar b84 alcohol dehydrogenase 1 (adh1) gene, partial
           sequence
          Length = 527

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 166 cggtgtttccaaatcatcca 185
           ||||||||||||||||||||
Sbjct: 306 cggtgtttccaaatcatcca 287



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>gb|AY590994.1| Zea mays cultivar B73 alcohol dehydrogenase 1 (adh1) gene, partial
           sequence
          Length = 528

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 166 cggtgtttccaaatcatcca 185
           ||||||||||||||||||||
Sbjct: 307 cggtgtttccaaatcatcca 288



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>gb|AY590993.1| Zea mays cultivar 805 alcohol dehydrogenase 1 (adh1) gene, partial
           sequence
          Length = 526

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 166 cggtgtttccaaatcatcca 185
           ||||||||||||||||||||
Sbjct: 305 cggtgtttccaaatcatcca 286



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>gb|AY590992.1| Zea mays cultivar 647 alcohol dehydrogenase 1 (adh1) gene, partial
           sequence
          Length = 527

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 166 cggtgtttccaaatcatcca 185
           ||||||||||||||||||||
Sbjct: 306 cggtgtttccaaatcatcca 287



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>gb|AY590991.1| Zea mays cultivar 595 alcohol dehydrogenase 1 (adh1) gene, partial
           sequence
          Length = 526

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 166 cggtgtttccaaatcatcca 185
           ||||||||||||||||||||
Sbjct: 305 cggtgtttccaaatcatcca 286



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>gb|AY590990.1| Zea mays cultivar 207 alcohol dehydrogenase 1 (adh1) gene, partial
           sequence
          Length = 527

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 166 cggtgtttccaaatcatcca 185
           ||||||||||||||||||||
Sbjct: 306 cggtgtttccaaatcatcca 287



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>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome
          Length = 5928787

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 217    ttgtgcagcggctttggcgtgttc 240
              |||||||||||||||||| |||||
Sbjct: 373384 ttgtgcagcggctttggcctgttc 373361



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>emb|AL390027.11| Human DNA sequence from clone RP11-368G3 on chromosome X Contains an
             UDP-GlcNAc:betaGal
             beta-1,3-N-acetylglucosaminyltransferase 1 (B3GNT1)
             pseudogene, complete sequence
          Length = 200191

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 94    atggcctcctacttgatgtt 113
             ||||||||||||||||||||
Sbjct: 18148 atggcctcctacttgatgtt 18129



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>emb|AL157762.13| Human DNA sequence from clone RP11-153I24 on chromosome 13q33.1-34
            Contains the LIG4 gene for ligase IV, DNA, ATP-dependent,
            a novel gene (FLJ14906), the TNFSF13B gene for tumor
            necrosis factor (ligand) superfamily, member 13b and a
            CpG island, complete sequence
          Length = 185229

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 9    aaagcaaaaagagaataact 28
            ||||||||||||||||||||
Sbjct: 9360 aaagcaaaaagagaataact 9379



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>gb|AC107326.4| Drosophila melanogaster X BAC RP98-33A8 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 177096

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 8      caaagcaaaaagagaataac 27
              ||||||||||||||||||||
Sbjct: 140344 caaagcaaaaagagaataac 140363



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>gb|AC091202.3| Drosophila melanogaster 3L BAC RP98-30A3 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 171209

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 243   cctggcctgcagccaccagtccat 266
             ||||||||||||||| ||||||||
Sbjct: 95704 cctggcctgcagccagcagtccat 95727



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>gb|AF479264.1| Homo sapiens ligase IV, DNA, ATP-dependent (LIG4) gene, complete cds
          Length = 8590

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 9    aaagcaaaaagagaataact 28
            ||||||||||||||||||||
Sbjct: 4003 aaagcaaaaagagaataact 3984



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>gb|AF123535.1| Zea mays alcohol dehydrogenase 1 (adh1) gene, adh1-F allele, complete
             cds
          Length = 160480

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 166   cggtgtttccaaatcatcca 185
             ||||||||||||||||||||
Sbjct: 37975 cggtgtttccaaatcatcca 37956



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>gb|AE003563.4| Drosophila melanogaster chromosome 3L, section 22 of 83 of the complete
              sequence
          Length = 264966

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 243    cctggcctgcagccaccagtccat 266
              ||||||||||||||| ||||||||
Sbjct: 208640 cctggcctgcagccagcagtccat 208663



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>gb|AE003421.2| Drosophila melanogaster chromosome X, section 5 of 74 of the complete
              sequence
          Length = 304204

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 8      caaagcaaaaagagaataac 27
              ||||||||||||||||||||
Sbjct: 202654 caaagcaaaaagagaataac 202673



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>gb|AY691949.1| Zea mays alcohol dehydrogenase 1 (adh1A) gene, complete cds; Fourf
             copia_LTR and Huck gypsy_LTR retrotransposons, complete
             sequence; Opie2 copia_LTR retrotransposon Zeon gypsy_LTR
             and Opie1 copia_LTR retrotransposons, complete sequence;
             Ji copia_LTR retrotransposon, complete sequence; and
             unknown protein (adh1B), cyclin H-1 (adh1C), unknown
             protein (adh1D), hypothetical protein (adh1E), and unknown
             protein (adh1F) genes, complete cds
          Length = 126039

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 166   cggtgtttccaaatcatcca 185
             ||||||||||||||||||||
Sbjct: 15206 cggtgtttccaaatcatcca 15187


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,349,258
Number of Sequences: 3902068
Number of extensions: 2349258
Number of successful extensions: 47000
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 46936
Number of HSP's gapped (non-prelim): 64
length of query: 289
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 267
effective length of database: 17,147,199,772
effective search space: 4578302339124
effective search space used: 4578302339124
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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