ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd25k14
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY228552.1| Hordeum vulgare agmatine coumaroyltransferase (AC... 852 0.0
2gb|AY234333.1| Triticum aestivum putative agmatine coumaroyltran... 607 e-170
3ref|XM_474243.1| Oryza sativa (japonica cultivar-group), predic... 504 e-139
4emb|AL606646.3|OSJN00091 Oryza sativa genomic DNA, chromosome 4,... 504 e-139
5dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 504 e-139
6dbj|AK109743.1| Oryza sativa (japonica cultivar-group) cDNA clon... 504 e-139
7ref|XM_474244.1| Oryza sativa (japonica cultivar-group), predic... 420 e-114
8gb|AC078977.6| Oryza sativa (japonica cultivar-group) chromosome... 48 0.028
9dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.028
10ref|XM_450191.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.11
11ref|XM_469315.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.11
12gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 46 0.11
13gb|AC087412.14| Oryza sativa chromosome 3 BAC OSJNBb0070O09 geno... 46 0.11
14dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.11
15dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.11
16dbj|AP006548.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.11
17emb|AL365215.23| Human DNA sequence from clone RP11-416D8 on chr... 42 1.7
18emb|BX027057.1|CNS08T1H Single read from an extremity of a full-... 42 1.7
19emb|BX284752.1|NCB23B10 Neurospora crassa DNA linkage group II B... 42 1.7
20emb|BX546502.7| Zebrafish DNA sequence from clone RP71-62P22 in ... 42 1.7
21ref|XM_315590.2| Anopheles gambiae str. PEST ENSANGP00000017720 ... 42 1.7
22gb|AF025467.1| Caenorhabditis elegans cosmid R148, complete sequ... 40 6.8
23gb|AE007288.1| Sinorhizobium meliloti 1021 plasmid pSymA section... 40 6.8
24gb|AY577002.1| Danio rerio clone RZ150A4A11 C22orf4-like protein... 40 6.8
25emb|AJ231133.1|SOF231133 Saccharum officinarum mRNA for caffeic ... 40 6.8
26gb|AY365419.1| Saccharum hybrid cultivar caffeic acid 3-O-methyl... 40 6.8
27emb|AJ862840.1| Streptomyces griseus subsp. griseus streptomycin... 40 6.8
28emb|BX294147.1| Pirellula sp. strain 1 complete genome; segment ... 40 6.8
29ref|NM_181961.1| Caenorhabditis elegans R148.5b (R148.5) mRNA, c... 40 6.8
30ref|NM_065264.3| Caenorhabditis elegans R148.5a (R148.5) mRNA, c... 40 6.8
31ref|NM_214799.1| Danio rerio zgc:101677 (zgc:101677), mRNA 40 6.8
32dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.8
33gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 6.8
34dbj|AP004329.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.8
35dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 6.8
36dbj|AP003634.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.8
37gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome 40 6.8
38dbj|AP003385.2| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 6.8

>gb|AY228552.1| Hordeum vulgare agmatine coumaroyltransferase (ACT) mRNA, complete
            cds
          Length = 1508

 Score =  852 bits (430), Expect = 0.0
 Identities = 443/446 (99%), Gaps = 1/446 (0%)
 Strand = Plus / Minus

                                                                        
Query: 56   aacttcaaaaatagcaactaggcaagtggctaacgttgatccgacaccaggcacacattg 115
            |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1414 aacttcaaaaataa-aactaggcaagtggctaacgttgatccgacaccaggcacacattg 1356

                                                                        
Query: 116  gcacatggcaggtacgtgcaaacgggacctagtcgaggctgtagcagcagttcttgaagg 175
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1355 gcacatggcaggtacgtgcaaacgggacctagtcgaggctgtagcagcagttcttgaagg 1296

                                                                        
Query: 176  tgttcatgtcgcggctaaagagtggcacgtaggcgtccacgctgccgtcgcccaagaaag 235
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1295 tgttcatgtcgcggctaaagagtggcacgtaggcgtccacgctgccgtcgcccaagaaag 1236

                                                                        
Query: 236  acggcagcaggatgagcagaccctccaccggcaggtagctgggcatgaagaagaatggcc 295
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1235 acggcagcaggatgagcagaccctccaccggcaggtagctgggcatgaagaagaatggcc 1176

                                                                        
Query: 296  gcccgccgccgaagtccatgtcgtagaacgggatccgcagccagctgtccacctcgatgt 355
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1175 gcccgccgccgaagtccatgtcgtagaacgggatcagcagccagctgtccacctcgatgt 1116

                                                                        
Query: 356  tggggctcagcaccatgtccgccgcgtcggccgtcgccaccagccgctccttctccaccg 415
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1115 tggggctcagcaccatgtccgccgcgtcggccgtcgccaccagccgctccttctccaccg 1056

                                                                        
Query: 416  cgccggagttggcgaagtcgatgaaggacttgaagtagccatcgttgatccgggccacct 475
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1055 cgccggagttggcgaagtcgatgaaggacttgaagtagccatcgttgatccgggccacct 996

                                      
Query: 476  ccctgctgatgagctccacggcgtgc 501
            ||||||||||||||||||||||||||
Sbjct: 995  ccctgctgatgagctccacggcgtgc 970



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>gb|AY234333.1| Triticum aestivum putative agmatine coumaroyltransferase mRNA,
            partial cds
          Length = 1220

 Score =  607 bits (306), Expect = e-170
 Identities = 389/414 (93%), Gaps = 2/414 (0%)
 Strand = Plus / Minus

                                                                        
Query: 88   acgttgatccgacaccaggcacacattggcacatggcaggtacgtgcaaacgggacctag 147
            |||| |||||||||||| ||||||||| |||| |||||||||||| ||| ||| | ||||
Sbjct: 1116 acgtcgatccgacaccacgcacacatttgcacttggcaggtacgt-caagcgg-agctag 1059

                                                                        
Query: 148  tcgaggctgtagcagcagttcttgaaggtgttcatgtcgcggctaaagagtggcacgtag 207
            |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1058 tcgagggtgtagcagcagttcttgaaagtgttcatgtcgcggctaaagagtggcacgtag 999

                                                                        
Query: 208  gcgtccacgctgccgtcgcccaagaaagacggcagcaggatgagcagaccctccaccggc 267
            ||| |||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||
Sbjct: 998  gcgcccacgctgccgtcgcccaagaaggacggtagcaggatgagcaggccctccaccggc 939

                                                                        
Query: 268  aggtagctgggcatgaagaagaatggccgcccgccgccgaagtccatgtcgtagaacggg 327
            ||||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||
Sbjct: 938  aggtagctgggcatgaagaagaagggccggccgccgccgaggtccatgtcgtagaacggg 879

                                                                        
Query: 328  atccgcagccagctgtccacctcgatgttggggctcagcaccatgtccgccgcgtcggcc 387
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 878  atccgcagccagctgtccacctcgatgttggggctcagcaccatgtccgccgcgtcggcc 819

                                                                        
Query: 388  gtcgccaccagccgctccttctccaccgcgccggagttggcgaagtcgatgaaggacttg 447
            |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 818  gtcgccaccagccgttccttctccaccgtgccggagttggcgaagtcgatgaaggacttg 759

                                                                  
Query: 448  aagtagccatcgttgatccgggccacctccctgctgatgagctccacggcgtgc 501
            |||||||| |||||||| |||| |||||||| | ||||||||||||| ||||||
Sbjct: 758  aagtagccgtcgttgatacgggacacctcccggatgatgagctccaccgcgtgc 705



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>ref|XM_474243.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1293

 Score =  504 bits (254), Expect = e-139
 Identities = 323/346 (93%)
 Strand = Plus / Minus

                                                                        
Query: 156  gtagcagcagttcttgaaggtgttcatgtcgcggctaaagagtggcacgtaggcgtccac 215
            |||||||||||||||||||  || |||||||||||| |||||||||||||| ||||| ||
Sbjct: 1257 gtagcagcagttcttgaagacgtccatgtcgcggctgaagagtggcacgtacgcgtcaac 1198

                                                                        
Query: 216  gctgccgtcgcccaagaaagacggcagcaggatgagcagaccctccaccggcaggtagct 275
            ||| |||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 1197 gctcccgtcgccgaagaaagacggcagcaggatgagcaaaccttccaccggcaggtagct 1138

                                                                        
Query: 276  gggcatgaagaagaatggccgcccgccgccgaagtccatgtcgtagaacgggatccgcag 335
            |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 1137 gggcatgaagaagaatggccgcccgccgccgaagtcgaggtcgtagaacgggatccgcag 1078

                                                                        
Query: 336  ccagctgtccacctcgatgttggggctcagcaccatgtccgccgcgtcggccgtcgccac 395
            ||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||
Sbjct: 1077 ccagctgtccacctcgatgttcgggctcagcaccatctccgccgcgtcggccgacgccac 1018

                                                                        
Query: 396  cagccgctccttctccaccgcgccggagttggcgaagtcgatgaaggacttgaagtagcc 455
            ||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 1017 cagccgctcctcctccaccgcaccggagttggcgaagtcgatgaacgacttgaagtagcc 958

                                                          
Query: 456  atcgttgatccgggccacctccctgctgatgagctccacggcgtgc 501
             ||||||||||||  |||||||| | ||||||||||||||||||||
Sbjct: 957  gtcgttgatccggatcacctcccggttgatgagctccacggcgtgc 912



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>emb|AL606646.3|OSJN00091 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0087O24,
             complete sequence
          Length = 146168

 Score =  504 bits (254), Expect = e-139
 Identities = 323/346 (93%)
 Strand = Plus / Minus

                                                                         
Query: 156   gtagcagcagttcttgaaggtgttcatgtcgcggctaaagagtggcacgtaggcgtccac 215
             |||||||||||||||||||  || |||||||||||| |||||||||||||| ||||| ||
Sbjct: 11597 gtagcagcagttcttgaagacgtccatgtcgcggctgaagagtggcacgtacgcgtcaac 11538

                                                                         
Query: 216   gctgccgtcgcccaagaaagacggcagcaggatgagcagaccctccaccggcaggtagct 275
             ||| |||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 11537 gctcccgtcgccgaagaaagacggcagcaggatgagcaaaccttccaccggcaggtagct 11478

                                                                         
Query: 276   gggcatgaagaagaatggccgcccgccgccgaagtccatgtcgtagaacgggatccgcag 335
             |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 11477 gggcatgaagaagaatggccgcccgccgccgaagtcgaggtcgtagaacgggatccgcag 11418

                                                                         
Query: 336   ccagctgtccacctcgatgttggggctcagcaccatgtccgccgcgtcggccgtcgccac 395
             ||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||
Sbjct: 11417 ccagctgtccacctcgatgttcgggctcagcaccatctccgccgcgtcggccgacgccac 11358

                                                                         
Query: 396   cagccgctccttctccaccgcgccggagttggcgaagtcgatgaaggacttgaagtagcc 455
             ||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 11357 cagccgctcctcctccaccgcaccggagttggcgaagtcgatgaacgacttgaagtagcc 11298

                                                           
Query: 456   atcgttgatccgggccacctccctgctgatgagctccacggcgtgc 501
              ||||||||||||  |||||||| | ||||||||||||||||||||
Sbjct: 11297 gtcgttgatccggatcacctcccggttgatgagctccacggcgtgc 11252



 Score =  420 bits (212), Expect = e-114
 Identities = 302/332 (90%)
 Strand = Plus / Plus

                                                                         
Query: 157   tagcagcagttcttgaaggtgttcatgtcgcggctaaagagtggcacgtaggcgtccacg 216
             |||||||||||||||||||||| ||||||| |||| |||||||||||||||||||| |||
Sbjct: 13909 tagcagcagttcttgaaggtgtccatgtcgtggctgaagagtggcacgtaggcgtcgacg 13968

                                                                         
Query: 217   ctgccgtcgcccaagaaagacggcagcaggatgagcagaccctccaccggcaggtagctg 276
             |||||||||||  ||||||| ||||| |||||||| ||||||||||||||||||||||| 
Sbjct: 13969 ctgccgtcgccggagaaagatggcaggaggatgagaagaccctccaccggcaggtagcta 14028

                                                                         
Query: 277   ggcatgaagaagaatggccgcccgccgccgaagtccatgtcgtagaacgggatccgcagc 336
             ||| |||| | ||||||| | |||| ||||||||| |  |||||||||||||||||||||
Sbjct: 14029 ggcgtgaacaggaatggctggccgctgccgaagtcaagctcgtagaacgggatccgcagc 14088

                                                                         
Query: 337   cagctgtccacctcgatgttggggctcagcaccatgtccgccgcgtcggccgtcgccacc 396
             |||||||||||||||||||| |||||||||||||| |||||||||||||||| |||||||
Sbjct: 14089 cagctgtccacctcgatgttcgggctcagcaccatctccgccgcgtcggccgacgccacc 14148

                                                                         
Query: 397   agccgctccttctccaccgcgccggagttggcgaagtcgatgaaggacttgaagtagcca 456
             |||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||| 
Sbjct: 14149 agccgctcctcctccaccgcgccggagttggcgaagtcgacgaacgacttgaagtagccg 14208

                                             
Query: 457   tcgttgatccgggccacctccctgctgatgag 488
             ||||||||||| |||||| ||| | |||||||
Sbjct: 14209 tcgttgatccgtgccaccgcccggttgatgag 14240



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  504 bits (254), Expect = e-139
 Identities = 323/346 (93%)
 Strand = Plus / Minus

                                                                            
Query: 156      gtagcagcagttcttgaaggtgttcatgtcgcggctaaagagtggcacgtaggcgtccac 215
                |||||||||||||||||||  || |||||||||||| |||||||||||||| ||||| ||
Sbjct: 33960700 gtagcagcagttcttgaagacgtccatgtcgcggctgaagagtggcacgtacgcgtcaac 33960641

                                                                            
Query: 216      gctgccgtcgcccaagaaagacggcagcaggatgagcagaccctccaccggcaggtagct 275
                ||| |||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 33960640 gctcccgtcgccgaagaaagacggcagcaggatgagcaaaccttccaccggcaggtagct 33960581

                                                                            
Query: 276      gggcatgaagaagaatggccgcccgccgccgaagtccatgtcgtagaacgggatccgcag 335
                |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 33960580 gggcatgaagaagaatggccgcccgccgccgaagtcgaggtcgtagaacgggatccgcag 33960521

                                                                            
Query: 336      ccagctgtccacctcgatgttggggctcagcaccatgtccgccgcgtcggccgtcgccac 395
                ||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||
Sbjct: 33960520 ccagctgtccacctcgatgttcgggctcagcaccatctccgccgcgtcggccgacgccac 33960461

                                                                            
Query: 396      cagccgctccttctccaccgcgccggagttggcgaagtcgatgaaggacttgaagtagcc 455
                ||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 33960460 cagccgctcctcctccaccgcaccggagttggcgaagtcgatgaacgacttgaagtagcc 33960401

                                                              
Query: 456      atcgttgatccgggccacctccctgctgatgagctccacggcgtgc 501
                 ||||||||||||  |||||||| | ||||||||||||||||||||
Sbjct: 33960400 gtcgttgatccggatcacctcccggttgatgagctccacggcgtgc 33960355



 Score =  420 bits (212), Expect = e-114
 Identities = 302/332 (90%)
 Strand = Plus / Plus

                                                                            
Query: 157      tagcagcagttcttgaaggtgttcatgtcgcggctaaagagtggcacgtaggcgtccacg 216
                |||||||||||||||||||||| ||||||| |||| |||||||||||||||||||| |||
Sbjct: 33963012 tagcagcagttcttgaaggtgtccatgtcgtggctgaagagtggcacgtaggcgtcgacg 33963071

                                                                            
Query: 217      ctgccgtcgcccaagaaagacggcagcaggatgagcagaccctccaccggcaggtagctg 276
                |||||||||||  ||||||| ||||| |||||||| ||||||||||||||||||||||| 
Sbjct: 33963072 ctgccgtcgccggagaaagatggcaggaggatgagaagaccctccaccggcaggtagcta 33963131

                                                                            
Query: 277      ggcatgaagaagaatggccgcccgccgccgaagtccatgtcgtagaacgggatccgcagc 336
                ||| |||| | ||||||| | |||| ||||||||| |  |||||||||||||||||||||
Sbjct: 33963132 ggcgtgaacaggaatggctggccgctgccgaagtcaagctcgtagaacgggatccgcagc 33963191

                                                                            
Query: 337      cagctgtccacctcgatgttggggctcagcaccatgtccgccgcgtcggccgtcgccacc 396
                |||||||||||||||||||| |||||||||||||| |||||||||||||||| |||||||
Sbjct: 33963192 cagctgtccacctcgatgttcgggctcagcaccatctccgccgcgtcggccgacgccacc 33963251

                                                                            
Query: 397      agccgctccttctccaccgcgccggagttggcgaagtcgatgaaggacttgaagtagcca 456
                |||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||| 
Sbjct: 33963252 agccgctcctcctccaccgcgccggagttggcgaagtcgacgaacgacttgaagtagccg 33963311

                                                
Query: 457      tcgttgatccgggccacctccctgctgatgag 488
                ||||||||||| |||||| ||| | |||||||
Sbjct: 33963312 tcgttgatccgtgccaccgcccggttgatgag 33963343



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>dbj|AK109743.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-146-E07, full
            insert sequence
          Length = 1640

 Score =  504 bits (254), Expect = e-139
 Identities = 323/346 (93%)
 Strand = Plus / Minus

                                                                        
Query: 156  gtagcagcagttcttgaaggtgttcatgtcgcggctaaagagtggcacgtaggcgtccac 215
            |||||||||||||||||||  || |||||||||||| |||||||||||||| ||||| ||
Sbjct: 1411 gtagcagcagttcttgaagacgtccatgtcgcggctgaagagtggcacgtacgcgtcaac 1352

                                                                        
Query: 216  gctgccgtcgcccaagaaagacggcagcaggatgagcagaccctccaccggcaggtagct 275
            ||| |||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 1351 gctcccgtcgccgaagaaagacggcagcaggatgagcaaaccttccaccggcaggtagct 1292

                                                                        
Query: 276  gggcatgaagaagaatggccgcccgccgccgaagtccatgtcgtagaacgggatccgcag 335
            |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 1291 gggcatgaagaagaatggccgcccgccgccgaagtcgaggtcgtagaacgggatccgcag 1232

                                                                        
Query: 336  ccagctgtccacctcgatgttggggctcagcaccatgtccgccgcgtcggccgtcgccac 395
            ||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||
Sbjct: 1231 ccagctgtccacctcgatgttcgggctcagcaccatctccgccgcgtcggccgacgccac 1172

                                                                        
Query: 396  cagccgctccttctccaccgcgccggagttggcgaagtcgatgaaggacttgaagtagcc 455
            ||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 1171 cagccgctcctcctccaccgcaccggagttggcgaagtcgatgaacgacttgaagtagcc 1112

                                                          
Query: 456  atcgttgatccgggccacctccctgctgatgagctccacggcgtgc 501
             ||||||||||||  |||||||| | ||||||||||||||||||||
Sbjct: 1111 gtcgttgatccggatcacctcccggttgatgagctccacggcgtgc 1066



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>ref|XM_474244.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1350

 Score =  420 bits (212), Expect = e-114
 Identities = 302/332 (90%)
 Strand = Plus / Minus

                                                                        
Query: 157  tagcagcagttcttgaaggtgttcatgtcgcggctaaagagtggcacgtaggcgtccacg 216
            |||||||||||||||||||||| ||||||| |||| |||||||||||||||||||| |||
Sbjct: 1328 tagcagcagttcttgaaggtgtccatgtcgtggctgaagagtggcacgtaggcgtcgacg 1269

                                                                        
Query: 217  ctgccgtcgcccaagaaagacggcagcaggatgagcagaccctccaccggcaggtagctg 276
            |||||||||||  ||||||| ||||| |||||||| ||||||||||||||||||||||| 
Sbjct: 1268 ctgccgtcgccggagaaagatggcaggaggatgagaagaccctccaccggcaggtagcta 1209

                                                                        
Query: 277  ggcatgaagaagaatggccgcccgccgccgaagtccatgtcgtagaacgggatccgcagc 336
            ||| |||| | ||||||| | |||| ||||||||| |  |||||||||||||||||||||
Sbjct: 1208 ggcgtgaacaggaatggctggccgctgccgaagtcaagctcgtagaacgggatccgcagc 1149

                                                                        
Query: 337  cagctgtccacctcgatgttggggctcagcaccatgtccgccgcgtcggccgtcgccacc 396
            |||||||||||||||||||| |||||||||||||| |||||||||||||||| |||||||
Sbjct: 1148 cagctgtccacctcgatgttcgggctcagcaccatctccgccgcgtcggccgacgccacc 1089

                                                                        
Query: 397  agccgctccttctccaccgcgccggagttggcgaagtcgatgaaggacttgaagtagcca 456
            |||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||| 
Sbjct: 1088 agccgctcctcctccaccgcgccggagttggcgaagtcgacgaacgacttgaagtagccg 1029

                                            
Query: 457  tcgttgatccgggccacctccctgctgatgag 488
            ||||||||||| |||||| ||| | |||||||
Sbjct: 1028 tcgttgatccgtgccaccgcccggttgatgag 997



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>gb|AC078977.6| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0496H07,
             complete sequence
          Length = 164477

 Score = 48.1 bits (24), Expect = 0.028
 Identities = 60/72 (83%)
 Strand = Plus / Plus

                                                                         
Query: 298   ccgccgccgaagtccatgtcgtagaacgggatccgcagccagctgtccacctcgatgttg 357
             |||||||||||||| |  ||||||||   ||| | |||||||||||||||||||| ||  
Sbjct: 76714 ccgccgccgaagtcgagctcgtagaagtcgatgcccagccagctgtccacctcgacgtcc 76773

                         
Query: 358   gggctcagcacc 369
             |||| |||||||
Sbjct: 76774 gggcacagcacc 76785



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5,
              complete sequence
          Length = 29737217

 Score = 48.1 bits (24), Expect = 0.028
 Identities = 60/72 (83%)
 Strand = Plus / Plus

                                                                          
Query: 298    ccgccgccgaagtccatgtcgtagaacgggatccgcagccagctgtccacctcgatgttg 357
              |||||||||||||| |  ||||||||   ||| | |||||||||||||||||||| ||  
Sbjct: 872290 ccgccgccgaagtcgagctcgtagaagtcgatgcccagccagctgtccacctcgacgtcc 872349

                          
Query: 358    gggctcagcacc 369
              |||| |||||||
Sbjct: 872350 gggcacagcacc 872361



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>ref|XM_450191.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1359

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 59/71 (83%)
 Strand = Plus / Minus

                                                                        
Query: 298  ccgccgccgaagtccatgtcgtagaacgggatccgcagccagctgtccacctcgatgttg 357
            |||||||||||||| |  |||||||||||||     ||||||||||||||||| | || |
Sbjct: 1205 ccgccgccgaagtcgagctcgtagaacgggaaggtgagccagctgtccacctccaggtcg 1146

                       
Query: 358  gggctcagcac 368
            |||| ||||||
Sbjct: 1145 gggcacagcac 1135



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>ref|XM_469315.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1389

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 193  aagagtggcacgtaggcgtccacgctgccgtcgcc 227
            ||||||||||||||| |||| | ||||||||||||
Sbjct: 1340 aagagtggcacgtagacgtcgatgctgccgtcgcc 1306



 Score = 44.1 bits (22), Expect = 0.44
 Identities = 49/58 (84%)
 Strand = Plus / Minus

                                                                      
Query: 298  ccgccgccgaagtccatgtcgtagaacgggatccgcagccagctgtccacctcgatgt 355
            |||||||||||||| | |||||||||    || | |||||||||||||||||| ||||
Sbjct: 1235 ccgccgccgaagtcgaggtcgtagaagctcatgcccagccagctgtccacctccatgt 1178



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                   
Query: 193      aagagtggcacgtaggcgtccacgctgccgtcgcc 227
                ||||||||||||||| |||| | ||||||||||||
Sbjct: 26918691 aagagtggcacgtagacgtcgatgctgccgtcgcc 26918657



 Score = 44.1 bits (22), Expect = 0.44
 Identities = 49/58 (84%)
 Strand = Plus / Minus

                                                                          
Query: 298      ccgccgccgaagtccatgtcgtagaacgggatccgcagccagctgtccacctcgatgt 355
                |||||||||||||| | |||||||||    || | |||||||||||||||||| ||||
Sbjct: 26918586 ccgccgccgaagtcgaggtcgtagaagctcatgcccagccagctgtccacctccatgt 26918529



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>gb|AC087412.14| Oryza sativa chromosome 3 BAC OSJNBb0070O09 genomic sequence, complete
             sequence
          Length = 149303

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                
Query: 193   aagagtggcacgtaggcgtccacgctgccgtcgcc 227
             ||||||||||||||| |||| | ||||||||||||
Sbjct: 97691 aagagtggcacgtagacgtcgatgctgccgtcgcc 97657



 Score = 44.1 bits (22), Expect = 0.44
 Identities = 49/58 (84%)
 Strand = Plus / Minus

                                                                       
Query: 298   ccgccgccgaagtccatgtcgtagaacgggatccgcagccagctgtccacctcgatgt 355
             |||||||||||||| | |||||||||    || | |||||||||||||||||| ||||
Sbjct: 97586 ccgccgccgaagtcgaggtcgtagaagctcatgcccagccagctgtccacctccatgt 97529



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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 59/71 (83%)
 Strand = Plus / Minus

                                                                            
Query: 298      ccgccgccgaagtccatgtcgtagaacgggatccgcagccagctgtccacctcgatgttg 357
                |||||||||||||| |  |||||||||||||     ||||||||||||||||| | || |
Sbjct: 21163512 ccgccgccgaagtcgagctcgtagaacgggaaggtgagccagctgtccacctccaggtcg 21163453

                           
Query: 358      gggctcagcac 368
                |||| ||||||
Sbjct: 21163452 gggcacagcac 21163442



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                   
Query: 193      aagagtggcacgtaggcgtccacgctgccgtcgcc 227
                ||||||||||||||| |||| | ||||||||||||
Sbjct: 27010014 aagagtggcacgtagacgtcgatgctgccgtcgcc 27009980



 Score = 44.1 bits (22), Expect = 0.44
 Identities = 49/58 (84%)
 Strand = Plus / Minus

                                                                          
Query: 298      ccgccgccgaagtccatgtcgtagaacgggatccgcagccagctgtccacctcgatgt 355
                |||||||||||||| | |||||||||    || | |||||||||||||||||| ||||
Sbjct: 27009909 ccgccgccgaagtcgaggtcgtagaagctcatgcccagccagctgtccacctccatgt 27009852



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>dbj|AP006548.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone: P0705E11
          Length = 140729

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 59/71 (83%)
 Strand = Plus / Minus

                                                                         
Query: 298   ccgccgccgaagtccatgtcgtagaacgggatccgcagccagctgtccacctcgatgttg 357
             |||||||||||||| |  |||||||||||||     ||||||||||||||||| | || |
Sbjct: 34269 ccgccgccgaagtcgagctcgtagaacgggaaggtgagccagctgtccacctccaggtcg 34210

                        
Query: 358   gggctcagcac 368
             |||| ||||||
Sbjct: 34209 gggcacagcac 34199



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>emb|AL365215.23| Human DNA sequence from clone RP11-416D8 on chromosome 10 Contains the
             5' end of the RSU1 gene for Ras suppressor protein 1, the
             3' end of the CUBN gene for cubilin (intrinsic
             factor-cobalamin receptor) and a CpG island, complete
             sequence
          Length = 184703

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 348   ctcgatgttggggctcagcac 368
             |||||||||||||||||||||
Sbjct: 51790 ctcgatgttggggctcagcac 51810



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>emb|BX027057.1|CNS08T1H Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 3-PRIME end of
           clone FK0AAA40CC11 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 279

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 379 gcgtcggccgtcgccaccagc 399
           |||||||||||||||||||||
Sbjct: 131 gcgtcggccgtcgccaccagc 111



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>emb|BX284752.1|NCB23B10 Neurospora crassa DNA linkage group II BAC contig B23B10
          Length = 99967

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 80    agtggctaacgttgatccgacacca 104
             |||||||||||| ||||||||||||
Sbjct: 33123 agtggctaacgtcgatccgacacca 33147



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>emb|BX546502.7| Zebrafish DNA sequence from clone RP71-62P22 in linkage group 25,
              complete sequence
          Length = 169168

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 385    gccgtcgccaccagccgctcc 405
              |||||||||||||||||||||
Sbjct: 100054 gccgtcgccaccagccgctcc 100074



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>ref|XM_315590.2| Anopheles gambiae str. PEST ENSANGP00000017720
           (ENSANGG00000015231), partial mRNA
          Length = 966

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 379 gcgtcggccgtcgccaccagc 399
           |||||||||||||||||||||
Sbjct: 820 gcgtcggccgtcgccaccagc 840



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>gb|AF025467.1| Caenorhabditis elegans cosmid R148, complete sequence
          Length = 37154

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 228  caagaaagacggcagcagga 247
            ||||||||||||||||||||
Sbjct: 2399 caagaaagacggcagcagga 2418



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>gb|AE007288.1| Sinorhizobium meliloti 1021 plasmid pSymA section 94 of 121 of the
            complete plasmid sequence
          Length = 10943

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 382  tcggccgtcgccaccagccg 401
            ||||||||||||||||||||
Sbjct: 2761 tcggccgtcgccaccagccg 2742



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>gb|AY577002.1| Danio rerio clone RZ150A4A11 C22orf4-like protein mRNA, complete
           cds
          Length = 2068

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 228 caagaaagacggcagcagga 247
           ||||||||||||||||||||
Sbjct: 372 caagaaagacggcagcagga 391



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>emb|AJ231133.1|SOF231133 Saccharum officinarum mRNA for caffeic acid 3-O-methyltransferase
          Length = 1486

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 366 caccatgtccgccgcgtcgg 385
           ||||||||||||||||||||
Sbjct: 335 caccatgtccgccgcgtcgg 316



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>gb|AY365419.1| Saccharum hybrid cultivar caffeic acid 3-O-methyltransferase (COMT)
           gene, complete cds
          Length = 2012

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 366 caccatgtccgccgcgtcgg 385
           ||||||||||||||||||||
Sbjct: 231 caccatgtccgccgcgtcgg 212



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>emb|AJ862840.1| Streptomyces griseus subsp. griseus streptomycin gene cluster, strain
             DSM 40236
          Length = 90600

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 413   ccgcgccggagttggcgaag 432
             ||||||||||||||||||||
Sbjct: 67462 ccgcgccggagttggcgaag 67443



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>emb|BX294147.1| Pirellula sp. strain 1 complete genome; segment 15/24
          Length = 314450

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 445   ttgaagtagccatcgttgat 464
             ||||||||||||||||||||
Sbjct: 74867 ttgaagtagccatcgttgat 74886



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>ref|NM_181961.1| Caenorhabditis elegans R148.5b (R148.5) mRNA, complete cds
          Length = 1518

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 228 caagaaagacggcagcagga 247
           ||||||||||||||||||||
Sbjct: 637 caagaaagacggcagcagga 656



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>ref|NM_065264.3| Caenorhabditis elegans R148.5a (R148.5) mRNA, complete cds
          Length = 1848

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 228 caagaaagacggcagcagga 247
           ||||||||||||||||||||
Sbjct: 637 caagaaagacggcagcagga 656



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>ref|NM_214799.1| Danio rerio zgc:101677 (zgc:101677), mRNA
          Length = 2068

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 228 caagaaagacggcagcagga 247
           ||||||||||||||||||||
Sbjct: 372 caagaaagacggcagcagga 391



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 374      ccgccgcgtcggccgtcgccacca 397
                ||||||||||| ||||||||||||
Sbjct: 29600703 ccgccgcgtcgcccgtcgccacca 29600726



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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 406     ttctccaccgcgccggagttggcg 429
               |||||||||||||||||| |||||
Sbjct: 3905736 ttctccaccgcgccggaggtggcg 3905713



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>dbj|AP004329.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OJ1663_H12
          Length = 125422

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 374   ccgccgcgtcggccgtcgccacca 397
             ||||||||||| ||||||||||||
Sbjct: 44288 ccgccgcgtcgcccgtcgccacca 44311



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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 413     ccgcgccggagttggcgaag 432
               ||||||||||||||||||||
Sbjct: 5074056 ccgcgccggagttggcgaag 5074037



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>dbj|AP003634.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0655A07
          Length = 172473

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 374    ccgccgcgtcggccgtcgccacca 397
              ||||||||||| ||||||||||||
Sbjct: 165209 ccgccgcgtcgcccgtcgccacca 165232



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>gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome
          Length = 5411809

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 428     cgaagtcgatgaaggacttgaagt 451
               |||||| |||||||||||||||||
Sbjct: 1462631 cgaagtagatgaaggacttgaagt 1462654



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>dbj|AP003385.2| Homo sapiens genomic DNA, chromosome 11q clone:RP11-655M14, complete
             sequences
          Length = 174074

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 104   aggcacacattggcacatgg 123
             ||||||||||||||||||||
Sbjct: 72264 aggcacacattggcacatgg 72245


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,462,591
Number of Sequences: 3902068
Number of extensions: 3462591
Number of successful extensions: 74311
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 73679
Number of HSP's gapped (non-prelim): 627
length of query: 502
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 480
effective length of database: 17,147,199,772
effective search space: 8230655890560
effective search space used: 8230655890560
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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