Clone Name | rbasd25k14 |
---|---|
Clone Library Name | barley_pub |
>gb|AY228552.1| Hordeum vulgare agmatine coumaroyltransferase (ACT) mRNA, complete cds Length = 1508 Score = 852 bits (430), Expect = 0.0 Identities = 443/446 (99%), Gaps = 1/446 (0%) Strand = Plus / Minus Query: 56 aacttcaaaaatagcaactaggcaagtggctaacgttgatccgacaccaggcacacattg 115 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1414 aacttcaaaaataa-aactaggcaagtggctaacgttgatccgacaccaggcacacattg 1356 Query: 116 gcacatggcaggtacgtgcaaacgggacctagtcgaggctgtagcagcagttcttgaagg 175 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1355 gcacatggcaggtacgtgcaaacgggacctagtcgaggctgtagcagcagttcttgaagg 1296 Query: 176 tgttcatgtcgcggctaaagagtggcacgtaggcgtccacgctgccgtcgcccaagaaag 235 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1295 tgttcatgtcgcggctaaagagtggcacgtaggcgtccacgctgccgtcgcccaagaaag 1236 Query: 236 acggcagcaggatgagcagaccctccaccggcaggtagctgggcatgaagaagaatggcc 295 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1235 acggcagcaggatgagcagaccctccaccggcaggtagctgggcatgaagaagaatggcc 1176 Query: 296 gcccgccgccgaagtccatgtcgtagaacgggatccgcagccagctgtccacctcgatgt 355 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 1175 gcccgccgccgaagtccatgtcgtagaacgggatcagcagccagctgtccacctcgatgt 1116 Query: 356 tggggctcagcaccatgtccgccgcgtcggccgtcgccaccagccgctccttctccaccg 415 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1115 tggggctcagcaccatgtccgccgcgtcggccgtcgccaccagccgctccttctccaccg 1056 Query: 416 cgccggagttggcgaagtcgatgaaggacttgaagtagccatcgttgatccgggccacct 475 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1055 cgccggagttggcgaagtcgatgaaggacttgaagtagccatcgttgatccgggccacct 996 Query: 476 ccctgctgatgagctccacggcgtgc 501 |||||||||||||||||||||||||| Sbjct: 995 ccctgctgatgagctccacggcgtgc 970
>gb|AY234333.1| Triticum aestivum putative agmatine coumaroyltransferase mRNA, partial cds Length = 1220 Score = 607 bits (306), Expect = e-170 Identities = 389/414 (93%), Gaps = 2/414 (0%) Strand = Plus / Minus Query: 88 acgttgatccgacaccaggcacacattggcacatggcaggtacgtgcaaacgggacctag 147 |||| |||||||||||| ||||||||| |||| |||||||||||| ||| ||| | |||| Sbjct: 1116 acgtcgatccgacaccacgcacacatttgcacttggcaggtacgt-caagcgg-agctag 1059 Query: 148 tcgaggctgtagcagcagttcttgaaggtgttcatgtcgcggctaaagagtggcacgtag 207 |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 1058 tcgagggtgtagcagcagttcttgaaagtgttcatgtcgcggctaaagagtggcacgtag 999 Query: 208 gcgtccacgctgccgtcgcccaagaaagacggcagcaggatgagcagaccctccaccggc 267 ||| |||||||||||||||||||||| ||||| |||||||||||||| |||||||||||| Sbjct: 998 gcgcccacgctgccgtcgcccaagaaggacggtagcaggatgagcaggccctccaccggc 939 Query: 268 aggtagctgggcatgaagaagaatggccgcccgccgccgaagtccatgtcgtagaacggg 327 ||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||| Sbjct: 938 aggtagctgggcatgaagaagaagggccggccgccgccgaggtccatgtcgtagaacggg 879 Query: 328 atccgcagccagctgtccacctcgatgttggggctcagcaccatgtccgccgcgtcggcc 387 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 878 atccgcagccagctgtccacctcgatgttggggctcagcaccatgtccgccgcgtcggcc 819 Query: 388 gtcgccaccagccgctccttctccaccgcgccggagttggcgaagtcgatgaaggacttg 447 |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 818 gtcgccaccagccgttccttctccaccgtgccggagttggcgaagtcgatgaaggacttg 759 Query: 448 aagtagccatcgttgatccgggccacctccctgctgatgagctccacggcgtgc 501 |||||||| |||||||| |||| |||||||| | ||||||||||||| |||||| Sbjct: 758 aagtagccgtcgttgatacgggacacctcccggatgatgagctccaccgcgtgc 705
>ref|XM_474243.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1293 Score = 504 bits (254), Expect = e-139 Identities = 323/346 (93%) Strand = Plus / Minus Query: 156 gtagcagcagttcttgaaggtgttcatgtcgcggctaaagagtggcacgtaggcgtccac 215 ||||||||||||||||||| || |||||||||||| |||||||||||||| ||||| || Sbjct: 1257 gtagcagcagttcttgaagacgtccatgtcgcggctgaagagtggcacgtacgcgtcaac 1198 Query: 216 gctgccgtcgcccaagaaagacggcagcaggatgagcagaccctccaccggcaggtagct 275 ||| |||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||| Sbjct: 1197 gctcccgtcgccgaagaaagacggcagcaggatgagcaaaccttccaccggcaggtagct 1138 Query: 276 gggcatgaagaagaatggccgcccgccgccgaagtccatgtcgtagaacgggatccgcag 335 |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| Sbjct: 1137 gggcatgaagaagaatggccgcccgccgccgaagtcgaggtcgtagaacgggatccgcag 1078 Query: 336 ccagctgtccacctcgatgttggggctcagcaccatgtccgccgcgtcggccgtcgccac 395 ||||||||||||||||||||| |||||||||||||| |||||||||||||||| |||||| Sbjct: 1077 ccagctgtccacctcgatgttcgggctcagcaccatctccgccgcgtcggccgacgccac 1018 Query: 396 cagccgctccttctccaccgcgccggagttggcgaagtcgatgaaggacttgaagtagcc 455 ||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||| Sbjct: 1017 cagccgctcctcctccaccgcaccggagttggcgaagtcgatgaacgacttgaagtagcc 958 Query: 456 atcgttgatccgggccacctccctgctgatgagctccacggcgtgc 501 |||||||||||| |||||||| | |||||||||||||||||||| Sbjct: 957 gtcgttgatccggatcacctcccggttgatgagctccacggcgtgc 912
>emb|AL606646.3|OSJN00091 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0087O24, complete sequence Length = 146168 Score = 504 bits (254), Expect = e-139 Identities = 323/346 (93%) Strand = Plus / Minus Query: 156 gtagcagcagttcttgaaggtgttcatgtcgcggctaaagagtggcacgtaggcgtccac 215 ||||||||||||||||||| || |||||||||||| |||||||||||||| ||||| || Sbjct: 11597 gtagcagcagttcttgaagacgtccatgtcgcggctgaagagtggcacgtacgcgtcaac 11538 Query: 216 gctgccgtcgcccaagaaagacggcagcaggatgagcagaccctccaccggcaggtagct 275 ||| |||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||| Sbjct: 11537 gctcccgtcgccgaagaaagacggcagcaggatgagcaaaccttccaccggcaggtagct 11478 Query: 276 gggcatgaagaagaatggccgcccgccgccgaagtccatgtcgtagaacgggatccgcag 335 |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| Sbjct: 11477 gggcatgaagaagaatggccgcccgccgccgaagtcgaggtcgtagaacgggatccgcag 11418 Query: 336 ccagctgtccacctcgatgttggggctcagcaccatgtccgccgcgtcggccgtcgccac 395 ||||||||||||||||||||| |||||||||||||| |||||||||||||||| |||||| Sbjct: 11417 ccagctgtccacctcgatgttcgggctcagcaccatctccgccgcgtcggccgacgccac 11358 Query: 396 cagccgctccttctccaccgcgccggagttggcgaagtcgatgaaggacttgaagtagcc 455 ||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||| Sbjct: 11357 cagccgctcctcctccaccgcaccggagttggcgaagtcgatgaacgacttgaagtagcc 11298 Query: 456 atcgttgatccgggccacctccctgctgatgagctccacggcgtgc 501 |||||||||||| |||||||| | |||||||||||||||||||| Sbjct: 11297 gtcgttgatccggatcacctcccggttgatgagctccacggcgtgc 11252 Score = 420 bits (212), Expect = e-114 Identities = 302/332 (90%) Strand = Plus / Plus Query: 157 tagcagcagttcttgaaggtgttcatgtcgcggctaaagagtggcacgtaggcgtccacg 216 |||||||||||||||||||||| ||||||| |||| |||||||||||||||||||| ||| Sbjct: 13909 tagcagcagttcttgaaggtgtccatgtcgtggctgaagagtggcacgtaggcgtcgacg 13968 Query: 217 ctgccgtcgcccaagaaagacggcagcaggatgagcagaccctccaccggcaggtagctg 276 ||||||||||| ||||||| ||||| |||||||| ||||||||||||||||||||||| Sbjct: 13969 ctgccgtcgccggagaaagatggcaggaggatgagaagaccctccaccggcaggtagcta 14028 Query: 277 ggcatgaagaagaatggccgcccgccgccgaagtccatgtcgtagaacgggatccgcagc 336 ||| |||| | ||||||| | |||| ||||||||| | ||||||||||||||||||||| Sbjct: 14029 ggcgtgaacaggaatggctggccgctgccgaagtcaagctcgtagaacgggatccgcagc 14088 Query: 337 cagctgtccacctcgatgttggggctcagcaccatgtccgccgcgtcggccgtcgccacc 396 |||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||| Sbjct: 14089 cagctgtccacctcgatgttcgggctcagcaccatctccgccgcgtcggccgacgccacc 14148 Query: 397 agccgctccttctccaccgcgccggagttggcgaagtcgatgaaggacttgaagtagcca 456 |||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||| Sbjct: 14149 agccgctcctcctccaccgcgccggagttggcgaagtcgacgaacgacttgaagtagccg 14208 Query: 457 tcgttgatccgggccacctccctgctgatgag 488 ||||||||||| |||||| ||| | ||||||| Sbjct: 14209 tcgttgatccgtgccaccgcccggttgatgag 14240
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 504 bits (254), Expect = e-139 Identities = 323/346 (93%) Strand = Plus / Minus Query: 156 gtagcagcagttcttgaaggtgttcatgtcgcggctaaagagtggcacgtaggcgtccac 215 ||||||||||||||||||| || |||||||||||| |||||||||||||| ||||| || Sbjct: 33960700 gtagcagcagttcttgaagacgtccatgtcgcggctgaagagtggcacgtacgcgtcaac 33960641 Query: 216 gctgccgtcgcccaagaaagacggcagcaggatgagcagaccctccaccggcaggtagct 275 ||| |||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||| Sbjct: 33960640 gctcccgtcgccgaagaaagacggcagcaggatgagcaaaccttccaccggcaggtagct 33960581 Query: 276 gggcatgaagaagaatggccgcccgccgccgaagtccatgtcgtagaacgggatccgcag 335 |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| Sbjct: 33960580 gggcatgaagaagaatggccgcccgccgccgaagtcgaggtcgtagaacgggatccgcag 33960521 Query: 336 ccagctgtccacctcgatgttggggctcagcaccatgtccgccgcgtcggccgtcgccac 395 ||||||||||||||||||||| |||||||||||||| |||||||||||||||| |||||| Sbjct: 33960520 ccagctgtccacctcgatgttcgggctcagcaccatctccgccgcgtcggccgacgccac 33960461 Query: 396 cagccgctccttctccaccgcgccggagttggcgaagtcgatgaaggacttgaagtagcc 455 ||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||| Sbjct: 33960460 cagccgctcctcctccaccgcaccggagttggcgaagtcgatgaacgacttgaagtagcc 33960401 Query: 456 atcgttgatccgggccacctccctgctgatgagctccacggcgtgc 501 |||||||||||| |||||||| | |||||||||||||||||||| Sbjct: 33960400 gtcgttgatccggatcacctcccggttgatgagctccacggcgtgc 33960355 Score = 420 bits (212), Expect = e-114 Identities = 302/332 (90%) Strand = Plus / Plus Query: 157 tagcagcagttcttgaaggtgttcatgtcgcggctaaagagtggcacgtaggcgtccacg 216 |||||||||||||||||||||| ||||||| |||| |||||||||||||||||||| ||| Sbjct: 33963012 tagcagcagttcttgaaggtgtccatgtcgtggctgaagagtggcacgtaggcgtcgacg 33963071 Query: 217 ctgccgtcgcccaagaaagacggcagcaggatgagcagaccctccaccggcaggtagctg 276 ||||||||||| ||||||| ||||| |||||||| ||||||||||||||||||||||| Sbjct: 33963072 ctgccgtcgccggagaaagatggcaggaggatgagaagaccctccaccggcaggtagcta 33963131 Query: 277 ggcatgaagaagaatggccgcccgccgccgaagtccatgtcgtagaacgggatccgcagc 336 ||| |||| | ||||||| | |||| ||||||||| | ||||||||||||||||||||| Sbjct: 33963132 ggcgtgaacaggaatggctggccgctgccgaagtcaagctcgtagaacgggatccgcagc 33963191 Query: 337 cagctgtccacctcgatgttggggctcagcaccatgtccgccgcgtcggccgtcgccacc 396 |||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||| Sbjct: 33963192 cagctgtccacctcgatgttcgggctcagcaccatctccgccgcgtcggccgacgccacc 33963251 Query: 397 agccgctccttctccaccgcgccggagttggcgaagtcgatgaaggacttgaagtagcca 456 |||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||| Sbjct: 33963252 agccgctcctcctccaccgcgccggagttggcgaagtcgacgaacgacttgaagtagccg 33963311 Query: 457 tcgttgatccgggccacctccctgctgatgag 488 ||||||||||| |||||| ||| | ||||||| Sbjct: 33963312 tcgttgatccgtgccaccgcccggttgatgag 33963343
>dbj|AK109743.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-146-E07, full insert sequence Length = 1640 Score = 504 bits (254), Expect = e-139 Identities = 323/346 (93%) Strand = Plus / Minus Query: 156 gtagcagcagttcttgaaggtgttcatgtcgcggctaaagagtggcacgtaggcgtccac 215 ||||||||||||||||||| || |||||||||||| |||||||||||||| ||||| || Sbjct: 1411 gtagcagcagttcttgaagacgtccatgtcgcggctgaagagtggcacgtacgcgtcaac 1352 Query: 216 gctgccgtcgcccaagaaagacggcagcaggatgagcagaccctccaccggcaggtagct 275 ||| |||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||| Sbjct: 1351 gctcccgtcgccgaagaaagacggcagcaggatgagcaaaccttccaccggcaggtagct 1292 Query: 276 gggcatgaagaagaatggccgcccgccgccgaagtccatgtcgtagaacgggatccgcag 335 |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| Sbjct: 1291 gggcatgaagaagaatggccgcccgccgccgaagtcgaggtcgtagaacgggatccgcag 1232 Query: 336 ccagctgtccacctcgatgttggggctcagcaccatgtccgccgcgtcggccgtcgccac 395 ||||||||||||||||||||| |||||||||||||| |||||||||||||||| |||||| Sbjct: 1231 ccagctgtccacctcgatgttcgggctcagcaccatctccgccgcgtcggccgacgccac 1172 Query: 396 cagccgctccttctccaccgcgccggagttggcgaagtcgatgaaggacttgaagtagcc 455 ||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||| Sbjct: 1171 cagccgctcctcctccaccgcaccggagttggcgaagtcgatgaacgacttgaagtagcc 1112 Query: 456 atcgttgatccgggccacctccctgctgatgagctccacggcgtgc 501 |||||||||||| |||||||| | |||||||||||||||||||| Sbjct: 1111 gtcgttgatccggatcacctcccggttgatgagctccacggcgtgc 1066
>ref|XM_474244.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1350 Score = 420 bits (212), Expect = e-114 Identities = 302/332 (90%) Strand = Plus / Minus Query: 157 tagcagcagttcttgaaggtgttcatgtcgcggctaaagagtggcacgtaggcgtccacg 216 |||||||||||||||||||||| ||||||| |||| |||||||||||||||||||| ||| Sbjct: 1328 tagcagcagttcttgaaggtgtccatgtcgtggctgaagagtggcacgtaggcgtcgacg 1269 Query: 217 ctgccgtcgcccaagaaagacggcagcaggatgagcagaccctccaccggcaggtagctg 276 ||||||||||| ||||||| ||||| |||||||| ||||||||||||||||||||||| Sbjct: 1268 ctgccgtcgccggagaaagatggcaggaggatgagaagaccctccaccggcaggtagcta 1209 Query: 277 ggcatgaagaagaatggccgcccgccgccgaagtccatgtcgtagaacgggatccgcagc 336 ||| |||| | ||||||| | |||| ||||||||| | ||||||||||||||||||||| Sbjct: 1208 ggcgtgaacaggaatggctggccgctgccgaagtcaagctcgtagaacgggatccgcagc 1149 Query: 337 cagctgtccacctcgatgttggggctcagcaccatgtccgccgcgtcggccgtcgccacc 396 |||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||| Sbjct: 1148 cagctgtccacctcgatgttcgggctcagcaccatctccgccgcgtcggccgacgccacc 1089 Query: 397 agccgctccttctccaccgcgccggagttggcgaagtcgatgaaggacttgaagtagcca 456 |||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||| Sbjct: 1088 agccgctcctcctccaccgcgccggagttggcgaagtcgacgaacgacttgaagtagccg 1029 Query: 457 tcgttgatccgggccacctccctgctgatgag 488 ||||||||||| |||||| ||| | ||||||| Sbjct: 1028 tcgttgatccgtgccaccgcccggttgatgag 997
>gb|AC078977.6| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0496H07, complete sequence Length = 164477 Score = 48.1 bits (24), Expect = 0.028 Identities = 60/72 (83%) Strand = Plus / Plus Query: 298 ccgccgccgaagtccatgtcgtagaacgggatccgcagccagctgtccacctcgatgttg 357 |||||||||||||| | |||||||| ||| | |||||||||||||||||||| || Sbjct: 76714 ccgccgccgaagtcgagctcgtagaagtcgatgcccagccagctgtccacctcgacgtcc 76773 Query: 358 gggctcagcacc 369 |||| ||||||| Sbjct: 76774 gggcacagcacc 76785
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 48.1 bits (24), Expect = 0.028 Identities = 60/72 (83%) Strand = Plus / Plus Query: 298 ccgccgccgaagtccatgtcgtagaacgggatccgcagccagctgtccacctcgatgttg 357 |||||||||||||| | |||||||| ||| | |||||||||||||||||||| || Sbjct: 872290 ccgccgccgaagtcgagctcgtagaagtcgatgcccagccagctgtccacctcgacgtcc 872349 Query: 358 gggctcagcacc 369 |||| ||||||| Sbjct: 872350 gggcacagcacc 872361
>ref|XM_450191.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1359 Score = 46.1 bits (23), Expect = 0.11 Identities = 59/71 (83%) Strand = Plus / Minus Query: 298 ccgccgccgaagtccatgtcgtagaacgggatccgcagccagctgtccacctcgatgttg 357 |||||||||||||| | ||||||||||||| ||||||||||||||||| | || | Sbjct: 1205 ccgccgccgaagtcgagctcgtagaacgggaaggtgagccagctgtccacctccaggtcg 1146 Query: 358 gggctcagcac 368 |||| |||||| Sbjct: 1145 gggcacagcac 1135
>ref|XM_469315.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1389 Score = 46.1 bits (23), Expect = 0.11 Identities = 32/35 (91%) Strand = Plus / Minus Query: 193 aagagtggcacgtaggcgtccacgctgccgtcgcc 227 ||||||||||||||| |||| | |||||||||||| Sbjct: 1340 aagagtggcacgtagacgtcgatgctgccgtcgcc 1306 Score = 44.1 bits (22), Expect = 0.44 Identities = 49/58 (84%) Strand = Plus / Minus Query: 298 ccgccgccgaagtccatgtcgtagaacgggatccgcagccagctgtccacctcgatgt 355 |||||||||||||| | ||||||||| || | |||||||||||||||||| |||| Sbjct: 1235 ccgccgccgaagtcgaggtcgtagaagctcatgcccagccagctgtccacctccatgt 1178
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 46.1 bits (23), Expect = 0.11 Identities = 32/35 (91%) Strand = Plus / Minus Query: 193 aagagtggcacgtaggcgtccacgctgccgtcgcc 227 ||||||||||||||| |||| | |||||||||||| Sbjct: 26918691 aagagtggcacgtagacgtcgatgctgccgtcgcc 26918657 Score = 44.1 bits (22), Expect = 0.44 Identities = 49/58 (84%) Strand = Plus / Minus Query: 298 ccgccgccgaagtccatgtcgtagaacgggatccgcagccagctgtccacctcgatgt 355 |||||||||||||| | ||||||||| || | |||||||||||||||||| |||| Sbjct: 26918586 ccgccgccgaagtcgaggtcgtagaagctcatgcccagccagctgtccacctccatgt 26918529
>gb|AC087412.14| Oryza sativa chromosome 3 BAC OSJNBb0070O09 genomic sequence, complete sequence Length = 149303 Score = 46.1 bits (23), Expect = 0.11 Identities = 32/35 (91%) Strand = Plus / Minus Query: 193 aagagtggcacgtaggcgtccacgctgccgtcgcc 227 ||||||||||||||| |||| | |||||||||||| Sbjct: 97691 aagagtggcacgtagacgtcgatgctgccgtcgcc 97657 Score = 44.1 bits (22), Expect = 0.44 Identities = 49/58 (84%) Strand = Plus / Minus Query: 298 ccgccgccgaagtccatgtcgtagaacgggatccgcagccagctgtccacctcgatgt 355 |||||||||||||| | ||||||||| || | |||||||||||||||||| |||| Sbjct: 97586 ccgccgccgaagtcgaggtcgtagaagctcatgcccagccagctgtccacctccatgt 97529
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 46.1 bits (23), Expect = 0.11 Identities = 59/71 (83%) Strand = Plus / Minus Query: 298 ccgccgccgaagtccatgtcgtagaacgggatccgcagccagctgtccacctcgatgttg 357 |||||||||||||| | ||||||||||||| ||||||||||||||||| | || | Sbjct: 21163512 ccgccgccgaagtcgagctcgtagaacgggaaggtgagccagctgtccacctccaggtcg 21163453 Query: 358 gggctcagcac 368 |||| |||||| Sbjct: 21163452 gggcacagcac 21163442
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 46.1 bits (23), Expect = 0.11 Identities = 32/35 (91%) Strand = Plus / Minus Query: 193 aagagtggcacgtaggcgtccacgctgccgtcgcc 227 ||||||||||||||| |||| | |||||||||||| Sbjct: 27010014 aagagtggcacgtagacgtcgatgctgccgtcgcc 27009980 Score = 44.1 bits (22), Expect = 0.44 Identities = 49/58 (84%) Strand = Plus / Minus Query: 298 ccgccgccgaagtccatgtcgtagaacgggatccgcagccagctgtccacctcgatgt 355 |||||||||||||| | ||||||||| || | |||||||||||||||||| |||| Sbjct: 27009909 ccgccgccgaagtcgaggtcgtagaagctcatgcccagccagctgtccacctccatgt 27009852
>dbj|AP006548.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone: P0705E11 Length = 140729 Score = 46.1 bits (23), Expect = 0.11 Identities = 59/71 (83%) Strand = Plus / Minus Query: 298 ccgccgccgaagtccatgtcgtagaacgggatccgcagccagctgtccacctcgatgttg 357 |||||||||||||| | ||||||||||||| ||||||||||||||||| | || | Sbjct: 34269 ccgccgccgaagtcgagctcgtagaacgggaaggtgagccagctgtccacctccaggtcg 34210 Query: 358 gggctcagcac 368 |||| |||||| Sbjct: 34209 gggcacagcac 34199
>emb|AL365215.23| Human DNA sequence from clone RP11-416D8 on chromosome 10 Contains the 5' end of the RSU1 gene for Ras suppressor protein 1, the 3' end of the CUBN gene for cubilin (intrinsic factor-cobalamin receptor) and a CpG island, complete sequence Length = 184703 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 348 ctcgatgttggggctcagcac 368 ||||||||||||||||||||| Sbjct: 51790 ctcgatgttggggctcagcac 51810
>emb|BX027057.1|CNS08T1H Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAA40CC11 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 279 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 379 gcgtcggccgtcgccaccagc 399 ||||||||||||||||||||| Sbjct: 131 gcgtcggccgtcgccaccagc 111
>emb|BX284752.1|NCB23B10 Neurospora crassa DNA linkage group II BAC contig B23B10 Length = 99967 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 80 agtggctaacgttgatccgacacca 104 |||||||||||| |||||||||||| Sbjct: 33123 agtggctaacgtcgatccgacacca 33147
>emb|BX546502.7| Zebrafish DNA sequence from clone RP71-62P22 in linkage group 25, complete sequence Length = 169168 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 385 gccgtcgccaccagccgctcc 405 ||||||||||||||||||||| Sbjct: 100054 gccgtcgccaccagccgctcc 100074
>ref|XM_315590.2| Anopheles gambiae str. PEST ENSANGP00000017720 (ENSANGG00000015231), partial mRNA Length = 966 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 379 gcgtcggccgtcgccaccagc 399 ||||||||||||||||||||| Sbjct: 820 gcgtcggccgtcgccaccagc 840
>gb|AF025467.1| Caenorhabditis elegans cosmid R148, complete sequence Length = 37154 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 228 caagaaagacggcagcagga 247 |||||||||||||||||||| Sbjct: 2399 caagaaagacggcagcagga 2418
>gb|AE007288.1| Sinorhizobium meliloti 1021 plasmid pSymA section 94 of 121 of the complete plasmid sequence Length = 10943 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 382 tcggccgtcgccaccagccg 401 |||||||||||||||||||| Sbjct: 2761 tcggccgtcgccaccagccg 2742
>gb|AY577002.1| Danio rerio clone RZ150A4A11 C22orf4-like protein mRNA, complete cds Length = 2068 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 228 caagaaagacggcagcagga 247 |||||||||||||||||||| Sbjct: 372 caagaaagacggcagcagga 391
>emb|AJ231133.1|SOF231133 Saccharum officinarum mRNA for caffeic acid 3-O-methyltransferase Length = 1486 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 366 caccatgtccgccgcgtcgg 385 |||||||||||||||||||| Sbjct: 335 caccatgtccgccgcgtcgg 316
>gb|AY365419.1| Saccharum hybrid cultivar caffeic acid 3-O-methyltransferase (COMT) gene, complete cds Length = 2012 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 366 caccatgtccgccgcgtcgg 385 |||||||||||||||||||| Sbjct: 231 caccatgtccgccgcgtcgg 212
>emb|AJ862840.1| Streptomyces griseus subsp. griseus streptomycin gene cluster, strain DSM 40236 Length = 90600 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 413 ccgcgccggagttggcgaag 432 |||||||||||||||||||| Sbjct: 67462 ccgcgccggagttggcgaag 67443
>emb|BX294147.1| Pirellula sp. strain 1 complete genome; segment 15/24 Length = 314450 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 445 ttgaagtagccatcgttgat 464 |||||||||||||||||||| Sbjct: 74867 ttgaagtagccatcgttgat 74886
>ref|NM_181961.1| Caenorhabditis elegans R148.5b (R148.5) mRNA, complete cds Length = 1518 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 228 caagaaagacggcagcagga 247 |||||||||||||||||||| Sbjct: 637 caagaaagacggcagcagga 656
>ref|NM_065264.3| Caenorhabditis elegans R148.5a (R148.5) mRNA, complete cds Length = 1848 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 228 caagaaagacggcagcagga 247 |||||||||||||||||||| Sbjct: 637 caagaaagacggcagcagga 656
>ref|NM_214799.1| Danio rerio zgc:101677 (zgc:101677), mRNA Length = 2068 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 228 caagaaagacggcagcagga 247 |||||||||||||||||||| Sbjct: 372 caagaaagacggcagcagga 391
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 374 ccgccgcgtcggccgtcgccacca 397 ||||||||||| |||||||||||| Sbjct: 29600703 ccgccgcgtcgcccgtcgccacca 29600726
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 406 ttctccaccgcgccggagttggcg 429 |||||||||||||||||| ||||| Sbjct: 3905736 ttctccaccgcgccggaggtggcg 3905713
>dbj|AP004329.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OJ1663_H12 Length = 125422 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 374 ccgccgcgtcggccgtcgccacca 397 ||||||||||| |||||||||||| Sbjct: 44288 ccgccgcgtcgcccgtcgccacca 44311
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 413 ccgcgccggagttggcgaag 432 |||||||||||||||||||| Sbjct: 5074056 ccgcgccggagttggcgaag 5074037
>dbj|AP003634.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0655A07 Length = 172473 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 374 ccgccgcgtcggccgtcgccacca 397 ||||||||||| |||||||||||| Sbjct: 165209 ccgccgcgtcgcccgtcgccacca 165232
>gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome Length = 5411809 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 428 cgaagtcgatgaaggacttgaagt 451 |||||| ||||||||||||||||| Sbjct: 1462631 cgaagtagatgaaggacttgaagt 1462654
>dbj|AP003385.2| Homo sapiens genomic DNA, chromosome 11q clone:RP11-655M14, complete sequences Length = 174074 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 104 aggcacacattggcacatgg 123 |||||||||||||||||||| Sbjct: 72264 aggcacacattggcacatgg 72245 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,462,591 Number of Sequences: 3902068 Number of extensions: 3462591 Number of successful extensions: 74311 Number of sequences better than 10.0: 38 Number of HSP's better than 10.0 without gapping: 35 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 73679 Number of HSP's gapped (non-prelim): 627 length of query: 502 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 480 effective length of database: 17,147,199,772 effective search space: 8230655890560 effective search space used: 8230655890560 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)