ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd25k13
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
112KD_FRAAN (Q05349) Auxin-repressed 12.5 kDa protein 49 3e-06
2POLS_SFV (P03315) Structural polyprotein (p130) [Contains: Capsi... 27 9.7
3MURA_HAEIN (P45025) UDP-N-acetylglucosamine 1-carboxyvinyltransf... 27 9.7
4KR105_HUMAN (P60370) Keratin-associated protein 10-5 (Keratin-as... 27 9.7

>12KD_FRAAN (Q05349) Auxin-repressed 12.5 kDa protein|
          Length = 111

 Score = 48.9 bits (115), Expect = 3e-06
 Identities = 19/27 (70%), Positives = 23/27 (85%)
 Frame = -2

Query: 337 GANLFDRPQPNSPTVYDWLYSDETRTR 257
           G  +FD PQPNSPTVYDW+YS ETR++
Sbjct: 82  GNQVFDSPQPNSPTVYDWMYSGETRSK 108



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>POLS_SFV (P03315) Structural polyprotein (p130) [Contains: Capsid protein (EC|
            3.4.21.-) (Coat protein) (C); p62 (E3/E2); E3 protein
            (Spike glycoprotein E3); E2 envelope glycoprotein (Spike
            glycoprotein E2); 6K protein; E1 envelope glycoprotein
            (Spike gly
          Length = 1253

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 8/49 (16%)
 Frame = +3

Query: 12   STHIHPSLASMRRAKSKLR*QKKVT--------STSIVVLLSLGETTCS 134
            S H H ++A+++ A +K++   KVT        S S VV L     TCS
Sbjct: 1144 SVHSHSNVATLQEATAKVKTAGKVTLHFSTASASPSFVVSLCSARATCS 1192



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>MURA_HAEIN (P45025) UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC|
           2.5.1.7) (Enoylpyruvate transferase)
           (UDP-N-acetylglucosamine enolpyruvyl transferase) (EPT)
          Length = 424

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +1

Query: 121 KLHAASDSNVRTQDLDXXKSSKHGVVPDRSCRSSTPVFLFFSGGC 255
           K+  A  +++  + ++     +H VVPDR    +  +    SGGC
Sbjct: 206 KITGAGSAHITIEGVERLTGCEHSVVPDRIETGTFLIAAAISGGC 250



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>KR105_HUMAN (P60370) Keratin-associated protein 10-5 (Keratin-associated|
           protein 10.5) (High sulfur keratin-associated protein
           10.5) (Keratin-associated protein 18-5)
           (Keratin-associated protein 18.5)
          Length = 271

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -1

Query: 200 GTTPCLLLFXXSKSCVRTLLSEAAC 126
           GT PCL L     SCV +   +AAC
Sbjct: 32  GTAPCLTLVCTPVSCVSSPCCQAAC 56


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,638,422
Number of Sequences: 219361
Number of extensions: 558565
Number of successful extensions: 1258
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1258
length of database: 80,573,946
effective HSP length: 88
effective length of database: 61,270,178
effective search space used: 1470484272
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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