ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd25k13
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK119708.1| Oryza sativa (japonica cultivar-group) cDNA clon... 137 3e-29
2dbj|AK060981.1| Oryza sativa (japonica cultivar-group) cDNA clon... 137 3e-29
3gb|AF467730.1| Oryza sativa putative dormancy-asociated protein ... 129 6e-27
4gb|AY103814.1| Zea mays PCO099562 mRNA sequence 127 2e-26
5gb|AC134924.2| Oryza sativa (japonica cultivar-group) chromosome... 101 1e-18
6dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 101 1e-18
7dbj|AK111295.1| Oryza sativa (japonica cultivar-group) cDNA clon... 101 1e-18
8gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 101 1e-18
9gb|AC169374.2| Sorghum bicolor clone SB_BBc0019I06, complete seq... 86 8e-14
10gb|L15194.1| Malus x domestica unknown mRNA 56 8e-05
11gb|AF336307.1|AF336307 Malus x domestica auxin-repressed protein... 56 8e-05
12ref|NM_128942.2| Arabidopsis thaliana unknown protein AT2G33830 ... 52 0.001
13ref|NM_179889.1| Arabidopsis thaliana unknown protein AT2G33830 ... 52 0.001
14gb|AF361846.1| Arabidopsis thaliana At2g33830/T1B8.13 mRNA, comp... 52 0.001
15gb|AY066049.1| Arabidopsis thaliana At2g33830/T1B8.13 mRNA, comp... 52 0.001
16gb|AY973621.1| Manihot esculenta auxin-repressed protein-like pr... 52 0.001
17gb|AY973620.1| Manihot esculenta auxin-repressed protein-like pr... 52 0.001
18gb|AY085689.1| Arabidopsis thaliana clone 1711 mRNA, complete se... 52 0.001
19dbj|AB050786.1| Arabidopsis thaliana mRNA for Dormancy-associate... 52 0.001
20gb|AY185352.1| Brassica rapa subsp. pekinensis auxin-repressed p... 48 0.018
21ref|NM_170650.2| Drosophila melanogaster Myosin heavy chain-like... 44 0.29
22ref|NM_169703.1| Drosophila melanogaster Myosin heavy chain-like... 44 0.29
23ref|NM_169701.1| Drosophila melanogaster Myosin heavy chain-like... 44 0.29
24ref|NM_169700.1| Drosophila melanogaster Myosin heavy chain-like... 44 0.29
25ref|NM_169699.1| Drosophila melanogaster Myosin heavy chain-like... 44 0.29
26gb|AY069747.1| Drosophila melanogaster LP08646 full length cDNA 44 0.29
27gb|AY051503.1| Drosophila melanogaster GH15471 full length cDNA 44 0.29
28gb|AC007726.7|AC007726 Drosophila melanogaster, chromosome 3R, r... 44 0.29
29emb|BX936416.11| Zebrafish DNA sequence from clone CH211-194I16 ... 44 0.29
30gb|AE003711.3| Drosophila melanogaster chromosome 3R, section 49... 44 0.29
31gb|BT001428.1| Drosophila melanogaster GH16009 full insert cDNA 44 0.29
32emb|AL663099.7| Mouse DNA sequence from clone DN-384L23 on chrom... 42 1.1
33dbj|AP007154.1| Aspergillus oryzae RIB40 genomic DNA, SC001 42 1.1
34gb|AF458410.1|AF458410 Brassica oleracea auxin-repressed protein... 42 1.1
35emb|AL606750.13| Mouse DNA sequence from clone RP23-335A19 on ch... 42 1.1
36gb|AC132262.2| Mus musculus chromosome 5 clone RP24-370J24, comp... 40 4.5
37gb|AC149224.7| Mus musculus BAC clone RP23-81D11 from chromosome... 40 4.5
38gb|AC010124.6| Drosophila melanogaster clone BACR06O03, complete... 40 4.5
39emb|CR751601.8| Zebrafish DNA sequence from clone CH211-162E3 in... 40 4.5
40gb|AC140411.3| Mus musculus BAC clone RP24-93J6 from chromosome ... 40 4.5
41gb|AC134453.4| Mus musculus BAC clone RP24-263P23 from chromosom... 40 4.5
42gb|AC104101.5| Mus musculus BAC clone RP24-377D2 from chromosome... 40 4.5
43emb|AL031676.3|HS753D4 Human DNA sequence from clone RP4-753D4 o... 40 4.5
44emb|AL669951.18| Mouse DNA sequence from clone RP23-94F11 on chr... 40 4.5
45gb|AC104166.2| Homo sapiens chromosome 3 clone RP11-199N21, comp... 40 4.5
46gb|DQ396892.1| Eulemur rubriventer clone 44HDZ119 microsatellite... 40 4.5
47gb|AC096922.2| Homo sapiens chromosome 3 clone RP11-436J20, comp... 40 4.5
48emb|BX571981.5| Zebrafish DNA sequence from clone DKEY-31J3 in l... 40 4.5
49ref|NM_058322.2| Caenorhabditis elegans R119.1 (R119.1) mRNA, co... 40 4.5
50gb|AC142417.2| Homo sapiens fosmid clone XXFOS-87237G7 from 2, c... 40 4.5
51gb|AF063007.3| Caenorhabditis elegans cosmid R119, complete sequ... 40 4.5
52emb|CT485668.1| Leptosphaeria maculans : genomic region surround... 40 4.5
53gb|AE003685.5| Drosophila melanogaster chromosome 3R, section 23... 40 4.5
54gb|AC158363.2| Mus musculus BAC clone RP23-214J3 from chromosome... 40 4.5 
>dbj|AK119708.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-157-E08, full
           insert sequence
          Length = 782

 Score =  137 bits (69), Expect = 3e-29
 Identities = 75/77 (97%)
 Strand = Plus / Minus

                                                                       
Query: 262 tcctggtctcgtcgctgtaaagccagtcgtagacggtgggggagttgggctgggggcggt 321
           ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct: 442 tcctggtctcgtcgctgtacagccagtcgtagacggtgggggagttgggctgcgggcggt 383

                            
Query: 322 cgaagaggttggcgccg 338
           |||||||||||||||||
Sbjct: 382 cgaagaggttggcgccg 366
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>dbj|AK060981.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-202-H08, full
           insert sequence
          Length = 801

 Score =  137 bits (69), Expect = 3e-29
 Identities = 75/77 (97%)
 Strand = Plus / Minus

                                                                       
Query: 262 tcctggtctcgtcgctgtaaagccagtcgtagacggtgggggagttgggctgggggcggt 321
           ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct: 442 tcctggtctcgtcgctgtacagccagtcgtagacggtgggggagttgggctgcgggcggt 383

                            
Query: 322 cgaagaggttggcgccg 338
           |||||||||||||||||
Sbjct: 382 cgaagaggttggcgccg 366
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>gb|AF467730.1| Oryza sativa putative dormancy-asociated protein mRNA, complete cds
          Length = 787

 Score =  129 bits (65), Expect = 6e-27
 Identities = 74/77 (96%)
 Strand = Plus / Minus

                                                                       
Query: 262 tcctggtctcgtcgctgtaaagccagtcgtagacggtgggggagttgggctgggggcggt 321
           ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 371 tcctggtctcgtcgctgtacagccagtcgtagaccgtgggggagttgggctgggggcggt 312

                            
Query: 322 cgaagaggttggcgccg 338
           |||| ||||||||||||
Sbjct: 311 cgaaaaggttggcgccg 295
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>gb|AY103814.1| Zea mays PCO099562 mRNA sequence
          Length = 1044

 Score =  127 bits (64), Expect = 2e-26
 Identities = 73/76 (96%)
 Strand = Plus / Minus

                                                                       
Query: 262 tcctggtctcgtcgctgtaaagccagtcgtagacggtgggggagttgggctgggggcggt 321
           ||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||
Sbjct: 608 tcctggtctcgtcgctgtagagccagtcgtagacggtgggggagttgggctgcggccggt 549

                           
Query: 322 cgaagaggttggcgcc 337
           ||||||||||||||||
Sbjct: 548 cgaagaggttggcgcc 533
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>gb|AC134924.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBb0076M06, complete sequence
          Length = 133581

 Score =  101 bits (51), Expect = 1e-18
 Identities = 54/55 (98%)
 Strand = Plus / Plus

                                                                    
Query: 284   ccagtcgtagacggtgggggagttgggctgggggcggtcgaagaggttggcgccg 338
             |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 54989 ccagtcgtagacggtgggggagttgggctgcgggcggtcgaagaggttggcgccg 55043



 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 262   tcctggtctcgtcgctgtaaagcc 285
             ||||||||||||||||||| ||||
Sbjct: 54706 tcctggtctcgtcgctgtacagcc 54729
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  101 bits (51), Expect = 1e-18
 Identities = 54/55 (98%)
 Strand = Plus / Plus

                                                                       
Query: 284      ccagtcgtagacggtgggggagttgggctgggggcggtcgaagaggttggcgccg 338
                |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 26253340 ccagtcgtagacggtgggggagttgggctgcgggcggtcgaagaggttggcgccg 26253394



 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 262      tcctggtctcgtcgctgtaaagcc 285
                ||||||||||||||||||| ||||
Sbjct: 26253057 tcctggtctcgtcgctgtacagcc 26253080
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>dbj|AK111295.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-181-A09, full
           insert sequence
          Length = 859

 Score =  101 bits (51), Expect = 1e-18
 Identities = 54/55 (98%)
 Strand = Plus / Plus

                                                                  
Query: 284 ccagtcgtagacggtgggggagttgggctgggggcggtcgaagaggttggcgccg 338
           |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 368 ccagtcgtagacggtgggggagttgggctgcgggcggtcgaagaggttggcgccg 422



 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 262 tcctggtctcgtcgctgtaaagcc 285
           ||||||||||||||||||| ||||
Sbjct: 85  tcctggtctcgtcgctgtacagcc 108
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  101 bits (51), Expect = 1e-18
 Identities = 54/55 (98%)
 Strand = Plus / Plus

                                                                       
Query: 284      ccagtcgtagacggtgggggagttgggctgggggcggtcgaagaggttggcgccg 338
                |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 26567598 ccagtcgtagacggtgggggagttgggctgcgggcggtcgaagaggttggcgccg 26567652



 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 262      tcctggtctcgtcgctgtaaagcc 285
                ||||||||||||||||||| ||||
Sbjct: 26567315 tcctggtctcgtcgctgtacagcc 26567338
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>gb|AC169374.2| Sorghum bicolor clone SB_BBc0019I06, complete sequence
          Length = 129695

 Score = 85.7 bits (43), Expect = 8e-14
 Identities = 49/51 (96%)
 Strand = Plus / Minus

                                                                
Query: 284   ccagtcgtagacggtgggggagttgggctgggggcggtcgaagaggttggc 334
             |||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 13127 ccagtcgtagacggtgggggagtttggctgcgggcggtcgaagaggttggc 13077



 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 262   tcctggtctcgtcgctgtaaagcc 285
             ||||||||||||||||||| ||||
Sbjct: 13940 tcctggtctcgtcgctgtagagcc 13917
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>gb|L15194.1| Malus x domestica unknown mRNA
          Length = 705

 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 46/52 (88%)
 Strand = Plus / Minus

                                                               
Query: 262 tcctggtctcgtcgctgtaaagccagtcgtagacggtgggggagttgggctg 313
           ||||||||||  | ||||| |||||||||||||| ||||| |||||||||||
Sbjct: 376 tcctggtctccccactgtagagccagtcgtagacagtgggagagttgggctg 325
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>gb|AF336307.1|AF336307 Malus x domestica auxin-repressed protein like-protein mRNA,
           complete cds
          Length = 734

 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 46/52 (88%)
 Strand = Plus / Minus

                                                               
Query: 262 tcctggtctcgtcgctgtaaagccagtcgtagacggtgggggagttgggctg 313
           ||||||||||  | ||||| |||||||||||||| ||||| |||||||||||
Sbjct: 372 tcctggtctccccactgtagagccagtcgtagacagtgggagagttgggctg 321
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>ref|NM_128942.2| Arabidopsis thaliana unknown protein AT2G33830 transcript variant
           AT2G33830.1 mRNA, complete cds
          Length = 618

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                 
Query: 270 tcgtcgctgtaaagccagtcgtagacggtgggggagtt 307
           ||||||||||| ||||| |||||||||||||| |||||
Sbjct: 352 tcgtcgctgtatagccaatcgtagacggtgggagagtt 315
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>ref|NM_179889.1| Arabidopsis thaliana unknown protein AT2G33830 transcript variant
           AT2G33830.2 mRNA, complete cds
          Length = 626

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                 
Query: 270 tcgtcgctgtaaagccagtcgtagacggtgggggagtt 307
           ||||||||||| ||||| |||||||||||||| |||||
Sbjct: 360 tcgtcgctgtatagccaatcgtagacggtgggagagtt 323
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>gb|AF361846.1| Arabidopsis thaliana At2g33830/T1B8.13 mRNA, complete cds
          Length = 621

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                 
Query: 270 tcgtcgctgtaaagccagtcgtagacggtgggggagtt 307
           ||||||||||| ||||| |||||||||||||| |||||
Sbjct: 358 tcgtcgctgtatagccaatcgtagacggtgggagagtt 321
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>gb|AY066049.1| Arabidopsis thaliana At2g33830/T1B8.13 mRNA, complete cds
          Length = 327

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                 
Query: 270 tcgtcgctgtaaagccagtcgtagacggtgggggagtt 307
           ||||||||||| ||||| |||||||||||||| |||||
Sbjct: 305 tcgtcgctgtatagccaatcgtagacggtgggagagtt 268
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>gb|AY973621.1| Manihot esculenta auxin-repressed protein-like protein ARP2 mRNA,
           partial cds
          Length = 608

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                 
Query: 276 ctgtaaagccagtcgtagacggtgggggagttgggctg 313
           |||||||||||||| ||||| ||||||||||| |||||
Sbjct: 179 ctgtaaagccagtcatagacagtgggggagttaggctg 142
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>gb|AY973620.1| Manihot esculenta auxin-repressed protein-like protein ARP1 mRNA,
           complete cds
          Length = 743

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                 
Query: 276 ctgtaaagccagtcgtagacggtgggggagttgggctg 313
           |||||||||||||| ||||| ||||||||||| |||||
Sbjct: 351 ctgtaaagccagtcatagacagtgggggagttaggctg 314
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>gb|AY085689.1| Arabidopsis thaliana clone 1711 mRNA, complete sequence
          Length = 597

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                 
Query: 270 tcgtcgctgtaaagccagtcgtagacggtgggggagtt 307
           ||||||||||| ||||| |||||||||||||| |||||
Sbjct: 353 tcgtcgctgtatagccaatcgtagacggtgggagagtt 316
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>dbj|AB050786.1| Arabidopsis thaliana mRNA for Dormancy-associated protein homolog,
           complete cds
          Length = 621

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                 
Query: 270 tcgtcgctgtaaagccagtcgtagacggtgggggagtt 307
           ||||||||||| ||||| |||||||||||||| |||||
Sbjct: 358 tcgtcgctgtatagccaatcgtagacggtgggagagtt 321
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>gb|AY185352.1| Brassica rapa subsp. pekinensis auxin-repressed protein mRNA,
           partial cds
          Length = 570

 Score = 48.1 bits (24), Expect = 0.018
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                           
Query: 270 tcgtcgctgtaaagccagtcgtagacggtggg 301
           ||||||||||| | ||||||||||||||||||
Sbjct: 301 tcgtcgctgtacaaccagtcgtagacggtggg 270
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>ref|NM_170650.2| Drosophila melanogaster Myosin heavy chain-like CG31045-RC,
            transcript variant C (Mhcl), mRNA
          Length = 2928

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 273  tcgctgtaaagccagtcgtaga 294
            ||||||||||||||||||||||
Sbjct: 2505 tcgctgtaaagccagtcgtaga 2484
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>ref|NM_169703.1| Drosophila melanogaster Myosin heavy chain-like CG31045-RD,
            transcript variant D (Mhcl), mRNA
          Length = 4004

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 273  tcgctgtaaagccagtcgtaga 294
            ||||||||||||||||||||||
Sbjct: 3682 tcgctgtaaagccagtcgtaga 3661
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>ref|NM_169701.1| Drosophila melanogaster Myosin heavy chain-like CG31045-RB,
            transcript variant B (Mhcl), mRNA
          Length = 6384

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 273  tcgctgtaaagccagtcgtaga 294
            ||||||||||||||||||||||
Sbjct: 6062 tcgctgtaaagccagtcgtaga 6041
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>ref|NM_169700.1| Drosophila melanogaster Myosin heavy chain-like CG31045-RA,
            transcript variant A (Mhcl), mRNA
          Length = 6201

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 273  tcgctgtaaagccagtcgtaga 294
            ||||||||||||||||||||||
Sbjct: 5879 tcgctgtaaagccagtcgtaga 5858
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>ref|NM_169699.1| Drosophila melanogaster Myosin heavy chain-like CG31045-RE,
            transcript variant E (Mhcl), mRNA
          Length = 6706

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 273  tcgctgtaaagccagtcgtaga 294
            ||||||||||||||||||||||
Sbjct: 6384 tcgctgtaaagccagtcgtaga 6363
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>gb|AY069747.1| Drosophila melanogaster LP08646 full length cDNA
          Length = 4254

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 273  tcgctgtaaagccagtcgtaga 294
            ||||||||||||||||||||||
Sbjct: 3682 tcgctgtaaagccagtcgtaga 3661
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>gb|AY051503.1| Drosophila melanogaster GH15471 full length cDNA
          Length = 6223

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 273  tcgctgtaaagccagtcgtaga 294
            ||||||||||||||||||||||
Sbjct: 5879 tcgctgtaaagccagtcgtaga 5858
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>gb|AC007726.7|AC007726 Drosophila melanogaster, chromosome 3R, region 89B-89B, BAC clone
             BACR05C20, complete sequence
          Length = 177278

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 273   tcgctgtaaagccagtcgtaga 294
             ||||||||||||||||||||||
Sbjct: 99088 tcgctgtaaagccagtcgtaga 99109
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>emb|BX936416.11| Zebrafish DNA sequence from clone CH211-194I16 in linkage group 18,
              complete sequence
          Length = 214763

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 5      cacacaaagtacacacatacac 26
              ||||||||||||||||||||||
Sbjct: 145187 cacacaaagtacacacatacac 145166
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>gb|AE003711.3| Drosophila melanogaster chromosome 3R, section 49 of 118 of the complete
              sequence
          Length = 236475

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 273    tcgctgtaaagccagtcgtaga 294
              ||||||||||||||||||||||
Sbjct: 190562 tcgctgtaaagccagtcgtaga 190583
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>gb|BT001428.1| Drosophila melanogaster GH16009 full insert cDNA
          Length = 2942

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 273  tcgctgtaaagccagtcgtaga 294
            ||||||||||||||||||||||
Sbjct: 2505 tcgctgtaaagccagtcgtaga 2484
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>emb|AL663099.7| Mouse DNA sequence from clone DN-384L23 on chromosome 3 Contains a
             glyceraldehyde-3-phosphate dehydrogenase (GAPD)
             pseudogene, two novel genes (4930406D18RIK)
             (4930431B09Rik), the 5' end of a novel gene
             (E130019M14RIK) and a CpG island, complete sequence
          Length = 177135

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 11    aagtacacacatacacccatcactc 35
             ||||||||||||||||||| |||||
Sbjct: 78133 aagtacacacatacacccaacactc 78157
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>dbj|AP007154.1| Aspergillus oryzae RIB40 genomic DNA, SC001
          Length = 2005935

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 178    agcagcaaacatggcgtcgtc 198
              |||||||||||||||||||||
Sbjct: 901517 agcagcaaacatggcgtcgtc 901497
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>gb|AF458410.1|AF458410 Brassica oleracea auxin-repressed protein (ARP1) mRNA, complete cds
          Length = 605

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 270 tcgtcgctgtaaagccagtcgtagacggt 298
           ||||||||||| |||||||| ||||||||
Sbjct: 331 tcgtcgctgtacagccagtcatagacggt 303
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>emb|AL606750.13| Mouse DNA sequence from clone RP23-335A19 on chromosome 3, complete
              sequence
          Length = 207366

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 11     aagtacacacatacacccatcactc 35
              ||||||||||||||||||| |||||
Sbjct: 135759 aagtacacacatacacccaacactc 135783
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>gb|AC132262.2| Mus musculus chromosome 5 clone RP24-370J24, complete sequence
          Length = 176466

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 248    gtggttgctcctggtcctgg 267
              ||||||||||||||||||||
Sbjct: 116683 gtggttgctcctggtcctgg 116702
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>gb|AC149224.7| Mus musculus BAC clone RP23-81D11 from chromosome 19, complete sequence
          Length = 217821

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 4      gcacacaaagtacacacata 23
              ||||||||||||||||||||
Sbjct: 114417 gcacacaaagtacacacata 114398
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>gb|AC010124.6| Drosophila melanogaster clone BACR06O03, complete sequence
          Length = 193483

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 297   gtgggggagttgggctgggg 316
             ||||||||||||||||||||
Sbjct: 58835 gtgggggagttgggctgggg 58854
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>emb|CR751601.8| Zebrafish DNA sequence from clone CH211-162E3 in linkage group 14,
              complete sequence
          Length = 141943

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 306    ttgggctgggggcggtcgaa 325
              ||||||||||||||||||||
Sbjct: 113159 ttgggctgggggcggtcgaa 113140
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>gb|AC140411.3| Mus musculus BAC clone RP24-93J6 from chromosome 19, complete sequence
          Length = 163978

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 7     cacaaagtacacacatacac 26
             ||||||||||||||||||||
Sbjct: 33495 cacaaagtacacacatacac 33514
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>gb|AC134453.4| Mus musculus BAC clone RP24-263P23 from chromosome 15, complete
             sequence
          Length = 131905

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 3     cgcacacaaagtacacacatacac 26
             ||||||||||| ||||||||||||
Sbjct: 77570 cgcacacaaaggacacacatacac 77593
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>gb|AC104101.5| Mus musculus BAC clone RP24-377D2 from chromosome 5, complete sequence
          Length = 185414

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 248   gtggttgctcctggtcctgg 267
             ||||||||||||||||||||
Sbjct: 72092 gtggttgctcctggtcctgg 72073
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>emb|AL031676.3|HS753D4 Human DNA sequence from clone RP4-753D4 on chromosome 20q12 Contains
             part of the PTPRT gene for protein tyrosine phosphatase
             receptor type T and a novel gene, complete sequence
          Length = 126635

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 60    aaactgaggtaacaaaagaa 79
             ||||||||||||||||||||
Sbjct: 76053 aaactgaggtaacaaaagaa 76034
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>emb|AL669951.18| Mouse DNA sequence from clone RP23-94F11 on chromosome 11 Contains three
              novel genes, a ribosomal protein L9 (Rpl9) pseudogene, a
              transcription elongation factor A (SII) 3 (Tcea3)
              pseudogene and the 3' end of the Fbxw1b gene for F-box and
              WD-40 domain protein 1B, complete sequence
          Length = 251085

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 5      cacacaaagtacacacatac 24
              ||||||||||||||||||||
Sbjct: 118428 cacacaaagtacacacatac 118447
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>gb|AC104166.2| Homo sapiens chromosome 3 clone RP11-199N21, complete sequence
          Length = 171705

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 300   ggggagttgggctgggggcggtcgaaga 327
             |||||||| ||||||||||||| |||||
Sbjct: 32167 ggggagtttggctgggggcggttgaaga 32194
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>gb|DQ396892.1| Eulemur rubriventer clone 44HDZ119 microsatellite sequence
          Length = 158

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 11 aagtacacacatacacccat 30
          ||||||||||||||||||||
Sbjct: 61 aagtacacacatacacccat 80
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>gb|AC096922.2| Homo sapiens chromosome 3 clone RP11-436J20, complete sequence
          Length = 218652

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 300  ggggagttgggctgggggcggtcgaaga 327
            |||||||| ||||||||||||| |||||
Sbjct: 1128 ggggagtttggctgggggcggttgaaga 1101
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>emb|BX571981.5| Zebrafish DNA sequence from clone DKEY-31J3 in linkage group 14, complete
              sequence
          Length = 258091

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 306    ttgggctgggggcggtcgaa 325
              ||||||||||||||||||||
Sbjct: 153411 ttgggctgggggcggtcgaa 153430
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>ref|NM_058322.2| Caenorhabditis elegans R119.1 (R119.1) mRNA, complete cds
          Length = 2197

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 318 cggtcgaagaggttggcgcc 337
           ||||||||||||||||||||
Sbjct: 740 cggtcgaagaggttggcgcc 759
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>gb|AC142417.2| Homo sapiens fosmid clone XXFOS-87237G7 from 2, complete sequence
          Length = 19840

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 6     acacaaagtacacacatacacccatcac 33
             ||||| ||||||||||||||| ||||||
Sbjct: 19605 acacacagtacacacatacacacatcac 19578
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>gb|AF063007.3| Caenorhabditis elegans cosmid R119, complete sequence
          Length = 38976

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 318  cggtcgaagaggttggcgcc 337
            ||||||||||||||||||||
Sbjct: 4365 cggtcgaagaggttggcgcc 4346
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>emb|CT485668.1| Leptosphaeria maculans : genomic region surrounding the avirulence gene
             AvrLm1 (AM084345)
          Length = 100390

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 15    acacacatacacccatcact 34
             ||||||||||||||||||||
Sbjct: 51554 acacacatacacccatcact 51535
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>gb|AE003685.5| Drosophila melanogaster chromosome 3R, section 23 of 118 of the
             complete sequence
          Length = 241476

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 297   gtgggggagttgggctgggg 316
             ||||||||||||||||||||
Sbjct: 56178 gtgggggagttgggctgggg 56159
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>gb|AC158363.2| Mus musculus BAC clone RP23-214J3 from chromosome 15, complete
            sequence
          Length = 228138

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 3    cgcacacaaagtacacacatacac 26
            ||||||||||| ||||||||||||
Sbjct: 9112 cgcacacaaaggacacacatacac 9135


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,811,246
Number of Sequences: 3902068
Number of extensions: 2811246
Number of successful extensions: 58343
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 58216
Number of HSP's gapped (non-prelim): 127
length of query: 338
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 316
effective length of database: 17,147,199,772
effective search space: 5418515127952
effective search space used: 5418515127952
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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