>TPT_FLATR (P49132) Triose phosphate/phosphate translocator, chloroplast|
           precursor (cTPT)
          Length = 407

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 21/68 (30%), Positives = 30/68 (44%)
 Frame = +3

Query: 54  AGPYGWNHSXRNPFFLLGLHPISWHNKSLNQIFTVLKQDRLKYFPL*RFLYFAHFATLPS 233
           A P G+    + PF + G     W+   LN IF +L +    YFP   F+   H A    
Sbjct: 91  AAPVGF--LAKYPFLVTGFFFFMWY--FLNVIFNILNKKIYNYFPYPYFVSVIHLAV--G 144

Query: 234 MRLMLGNW 257
           +   LG+W
Sbjct: 145 VVYCLGSW 152

>TPT_FLAPR (P49131) Triose phosphate/phosphate translocator, chloroplast|
           precursor (cTPT)
          Length = 408

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 21/68 (30%), Positives = 29/68 (42%)
 Frame = +3

Query: 54  AGPYGWNHSXRNPFFLLGLHPISWHNKSLNQIFTVLKQDRLKYFPL*RFLYFAHFATLPS 233
           A P G+    + PF + G     W+   LN IF +L +    YFP   F+   H A    
Sbjct: 92  AAPVGF--FAKYPFLVTGFFFFMWY--FLNVIFNILNKKIYNYFPYPYFVSAIHLAV--G 145

Query: 234 MRLMLGNW 257
           +   LG W
Sbjct: 146 VVYCLGGW 153

>RKPI_RHIME (Q52938) Capsular polysaccharide biosynthesis protein rkpI|
          Length = 538

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = -2

Query: 277 HFLAGGFQLPSIRRMEGSVAKWAKYKNLYNGKYFRRS 167
           HF     +LP++ R+     +W +  N++ G Y  R+
Sbjct: 274 HFGVDSIKLPTVDRLRKQAVQWGRLSNVFEGGYTLRT 310

>BEM2_ASHGO (Q9HF75) GTPase-activating protein BEM2|
          Length = 2071

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 13/61 (21%)
 Frame = -2

Query: 211 AKYKNLYNGKYFRRSCLSTVNIWFND-------------LLCQDIGCNPRRKKGFLXEWF 71
           A Y  LY+ +Y ++       ++FND             + C++ G  P+++   L +W 
Sbjct: 494 ADYSLLYDSQYTQKHVELNPLVFFNDKNVQYLSRLMVSHIFCEETGFTPKKRAEVLTKWV 553

Query: 70  Q 68
           Q
Sbjct: 554 Q 554

>GLYA_LEGPL (Q5WYH4) Serine hydroxymethyltransferase (EC 2.1.2.1) (Serine|
           methylase) (SHMT)
          Length = 417

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -1

Query: 284 GNPFPGWWLPVAKHKTHGRECSKMGKVQESLQWKV 180
           G+ F G  LP   H THG + +  GK+  S+++ V
Sbjct: 113 GDTFMGMALPHGGHLTHGSKVNFSGKLYHSVEYGV 147

>GLYA_LEGPH (Q5ZXK6) Serine hydroxymethyltransferase (EC 2.1.2.1) (Serine|
           methylase) (SHMT)
          Length = 417

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -1

Query: 284 GNPFPGWWLPVAKHKTHGRECSKMGKVQESLQWKV 180
           G+ F G  LP   H THG + +  GK+  S+++ V
Sbjct: 113 GDTFMGMALPHGGHLTHGSKVNFSGKLYHSVEYGV 147

>GLYA_LEGPA (Q5X722) Serine hydroxymethyltransferase (EC 2.1.2.1) (Serine|
           methylase) (SHMT)
          Length = 417

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -1

Query: 284 GNPFPGWWLPVAKHKTHGRECSKMGKVQESLQWKV 180
           G+ F G  LP   H THG + +  GK+  S+++ V
Sbjct: 113 GDTFMGMALPHGGHLTHGSKVNFSGKLYHSVEYGV 147

>ULP2_YEAST (P40537) Ubiquitin-like-specific protease 2 (EC 3.4.22.-)|
          Length = 1034

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 184 FHCKDSCTLPILLHSLPCVLCLATGSHQP 270
           F C DS TL I  H  PC++   +  + P
Sbjct: 154 FSCVDSKTLRIYRHKAPCIMTFVSDHNHP 182

>NPBW1_RAT (Q56UD9) Neuropeptides B/W receptor type 1 (G-protein coupled|
           receptor 7)
          Length = 329

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 182 LSIVKILVLCPFCYTPFHAS 241
           L +V IL +C  C+TP+H S
Sbjct: 253 LLVVAILAVCLLCWTPYHLS 272

>GR05A_DROME (Q9W497) Gustatory receptor for trehalose (Trehalose receptor)|
          Length = 444

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
 Frame = +3

Query: 72  NHSXRNPFFLLGLHPISWHNKSLNQIFTVLKQDR-----LKYFPL*RFLYFAHFATLPSM 236
           N   R P  LL L P+  ++  + +    L  D+     LK+F + R L+ A   T+ + 
Sbjct: 363 NDQAREPLRLLRLVPLKGYHPEVFRFAAELASDQVALTGLKFFNVTRKLFLAMAGTVATY 422

Query: 237 RLMLGNWKPPARKW 278
            L+L  +    + W
Sbjct: 423 ELVLIQFHEDKKTW 436

>YFC3_SCHPO (O14138) Hypothetical protein C25A8.03c in chromosome I|
          Length = 467

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 60  PYGWNHSXRNPFFLLGLHPIS 122
           P  WNH+  NP F+L L  IS
Sbjct: 221 PLTWNHTDTNPCFVLALQVIS 241

>Z856_ENCCU (Q8SUR9) Zinc finger C2H2 protein ECU08_0560|
          Length = 449

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 22/71 (30%), Positives = 32/71 (45%)
 Frame = -2

Query: 268 AGGFQLPSIRRMEGSVAKWAKYKNLYNGKYFRRSCLSTVNIWFNDLLCQDIGCNPRRKKG 89
           A   Q+    R  G V +  + K+L+  +     C S     F+D L Q+IG + R  KG
Sbjct: 219 ADSSQICEYMRSTGRVERLEQLKDLFGEEGLEVVCSSV----FSDKLLQEIGSSIRSAKG 274

Query: 88  FLXEWFQPYGP 56
              E F+  GP
Sbjct: 275 --PECFKDAGP 283


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,706,684
Number of Sequences: 219361
Number of extensions: 876331
Number of successful extensions: 2256
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2256
length of database: 80,573,946
effective HSP length: 73
effective length of database: 64,560,593
effective search space used: 1549454232
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)