ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd25k09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 155 9e-35
2dbj|AP005862.2| Oryza sativa (japonica cultivar-group) genomic D... 155 9e-35
3dbj|AP005679.2| Oryza sativa (japonica cultivar-group) genomic D... 155 9e-35
4dbj|AK067622.1| Oryza sativa (japonica cultivar-group) cDNA clon... 155 9e-35
5emb|BX537158.6| Human DNA sequence from clone RP11-280A15 on chr... 44 0.25
6gb|CP000153.1| Thiomicrospira denitrificans ATCC 33889, complete... 42 0.97
7ref|XM_324024.1| Neurospora crassa OR74A hypothetical protein (N... 40 3.8
8ref|XM_954119.1| Neurospora crassa OR74A hypothetical protein (N... 40 3.8
9emb|CT025643.4| Mouse DNA sequence from clone RP24-386L23 on chr... 40 3.8
10gb|AC113272.11| Mus musculus chromosome 1, clone RP23-379C24, co... 40 3.8
11emb|BX294013.1|NCX4G11 Neurospora crassa DNA linkage group V Cos... 40 3.8
12emb|AL117390.1|SPAC1805 S.pombe chromosome I cosmid c1805 40 3.8
13gb|AY967522.1| Schmidtea mediterranea clone HE.3.07A mRNA sequence 40 3.8
14gb|AC154470.2| Mus musculus BAC clone RP23-193P13 from chromosom... 40 3.8
15emb|AL133157.1|SPAC1B2 S.pombe chromosome I cosmid c1B2 40 3.8
16gb|AY066996.1| Schmidtea mediterranea clone H.19.8f unknown mRNA... 40 3.8
17emb|AL772290.3| Mouse DNA sequence from clone RP23-66O4 on chrom... 40 3.8 
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score =  155 bits (78), Expect = 9e-35
 Identities = 194/233 (83%)
 Strand = Plus / Plus

                                                                            
Query: 45       gcataatcagcaggtccatatggctggaaccattcancgaggaatcctttctttcttcta 104
                |||||||||||||| ||||||||||||||||||||| | || | ||||||||| ||| ||
Sbjct: 21384984 gcataatcagcaggcccatatggctggaaccattcagccagtactcctttcttcctttta 21385043

                                                                            
Query: 105      ggattgcatccgatatcttggcacaacaaatcattaaaccaaatattcacagtgcttaaa 164
                || |||||||| || |||||||| || | ||| ||||||||||| || || ||||||| |
Sbjct: 21385044 gggttgcatccaatgtcttggcataagatatcgttaaaccaaatgttaacggtgcttata 21385103

                                                                            
Query: 165      caagatcgtctaaaatactttccattgtaaagattcttgtactttgcccattttgctaca 224
                || || |  | ||| |||||||| |||||||||| ||| || || ||||| | |||||||
Sbjct: 21385104 caggacctgcgaaagtactttccgttgtaaagatccttatatttagcccactctgctaca 21385163

                                                                     
Query: 225      ctcccttccatgcgtcttatgcttggcaactggaagccaccagccaggaaatg 277
                ||| ||||||| | |||||||||||| || | ||||| |||| ||||||||||
Sbjct: 21385164 ctctcttccatacatcttatgcttggtaatttgaagcgaccacccaggaaatg 21385216
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>dbj|AP005862.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OSJNBa0038K02
          Length = 118635

 Score =  155 bits (78), Expect = 9e-35
 Identities = 194/233 (83%)
 Strand = Plus / Plus

                                                                          
Query: 45     gcataatcagcaggtccatatggctggaaccattcancgaggaatcctttctttcttcta 104
              |||||||||||||| ||||||||||||||||||||| | || | ||||||||| ||| ||
Sbjct: 117363 gcataatcagcaggcccatatggctggaaccattcagccagtactcctttcttcctttta 117422

                                                                          
Query: 105    ggattgcatccgatatcttggcacaacaaatcattaaaccaaatattcacagtgcttaaa 164
              || |||||||| || |||||||| || | ||| ||||||||||| || || ||||||| |
Sbjct: 117423 gggttgcatccaatgtcttggcataagatatcgttaaaccaaatgttaacggtgcttata 117482

                                                                          
Query: 165    caagatcgtctaaaatactttccattgtaaagattcttgtactttgcccattttgctaca 224
              || || |  | ||| |||||||| |||||||||| ||| || || ||||| | |||||||
Sbjct: 117483 caggacctgcgaaagtactttccgttgtaaagatccttatatttagcccactctgctaca 117542

                                                                   
Query: 225    ctcccttccatgcgtcttatgcttggcaactggaagccaccagccaggaaatg 277
              ||| ||||||| | |||||||||||| || | ||||| |||| ||||||||||
Sbjct: 117543 ctctcttccatacatcttatgcttggtaatttgaagcgaccacccaggaaatg 117595
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>dbj|AP005679.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
            clone:OJ1210_A07
          Length = 131394

 Score =  155 bits (78), Expect = 9e-35
 Identities = 194/233 (83%)
 Strand = Plus / Plus

                                                                        
Query: 45   gcataatcagcaggtccatatggctggaaccattcancgaggaatcctttctttcttcta 104
            |||||||||||||| ||||||||||||||||||||| | || | ||||||||| ||| ||
Sbjct: 2089 gcataatcagcaggcccatatggctggaaccattcagccagtactcctttcttcctttta 2148

                                                                        
Query: 105  ggattgcatccgatatcttggcacaacaaatcattaaaccaaatattcacagtgcttaaa 164
            || |||||||| || |||||||| || | ||| ||||||||||| || || ||||||| |
Sbjct: 2149 gggttgcatccaatgtcttggcataagatatcgttaaaccaaatgttaacggtgcttata 2208

                                                                        
Query: 165  caagatcgtctaaaatactttccattgtaaagattcttgtactttgcccattttgctaca 224
            || || |  | ||| |||||||| |||||||||| ||| || || ||||| | |||||||
Sbjct: 2209 caggacctgcgaaagtactttccgttgtaaagatccttatatttagcccactctgctaca 2268

                                                                 
Query: 225  ctcccttccatgcgtcttatgcttggcaactggaagccaccagccaggaaatg 277
            ||| ||||||| | |||||||||||| || | ||||| |||| ||||||||||
Sbjct: 2269 ctctcttccatacatcttatgcttggtaatttgaagcgaccacccaggaaatg 2321
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>dbj|AK067622.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013108A19, full
            insert sequence
          Length = 1856

 Score =  155 bits (78), Expect = 9e-35
 Identities = 194/233 (83%)
 Strand = Plus / Minus

                                                                        
Query: 45   gcataatcagcaggtccatatggctggaaccattcancgaggaatcctttctttcttcta 104
            |||||||||||||| ||||||||||||||||||||| | || | ||||||||| ||| ||
Sbjct: 1573 gcataatcagcaggcccatatggctggaaccattcagccagtactcctttcttcctttta 1514

                                                                        
Query: 105  ggattgcatccgatatcttggcacaacaaatcattaaaccaaatattcacagtgcttaaa 164
            || |||||||| || |||||||| || | ||| ||||||||||| || || ||||||| |
Sbjct: 1513 gggttgcatccaatgtcttggcataagatatcgttaaaccaaatgttaacggtgcttata 1454

                                                                        
Query: 165  caagatcgtctaaaatactttccattgtaaagattcttgtactttgcccattttgctaca 224
            || || |  | ||| |||||||| |||||||||| ||| || || ||||| | |||||||
Sbjct: 1453 caggacctgcgaaagtactttccgttgtaaagatccttatatttagcccactctgctaca 1394

                                                                 
Query: 225  ctcccttccatgcgtcttatgcttggcaactggaagccaccagccaggaaatg 277
            ||| ||||||| | |||||||||||| || | ||||| |||| ||||||||||
Sbjct: 1393 ctctcttccatacatcttatgcttggtaatttgaagcgaccacccaggaaatg 1341
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>emb|BX537158.6| Human DNA sequence from clone RP11-280A15 on chromosome 1 Contains the
             gene for a novel 7 transmembrane receptor (rhodopsin
             family) protein, complete sequence
          Length = 16414

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 197   attcttgtactttgcccatttt 218
             ||||||||||||||||||||||
Sbjct: 11561 attcttgtactttgcccatttt 11540
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>gb|CP000153.1| Thiomicrospira denitrificans ATCC 33889, complete genome
          Length = 2201561

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 205    actttgcccattttgctacactccc 229
              ||||||| |||||||||||||||||
Sbjct: 602989 actttgctcattttgctacactccc 602965
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>ref|XM_324024.1| Neurospora crassa OR74A hypothetical protein (NCU04669.1) partial
           mRNA
          Length = 2235

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 268 ccaggaaatggattacccaa 287
           ||||||||||||||||||||
Sbjct: 269 ccaggaaatggattacccaa 288
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>ref|XM_954119.1| Neurospora crassa OR74A hypothetical protein (NCU04669.1) partial
           mRNA
          Length = 2235

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 268 ccaggaaatggattacccaa 287
           ||||||||||||||||||||
Sbjct: 269 ccaggaaatggattacccaa 288
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>emb|CT025643.4| Mouse DNA sequence from clone RP24-386L23 on chromosome 13, complete
              sequence
          Length = 148821

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 2      gtacacaagtgacagttatg 21
              ||||||||||||||||||||
Sbjct: 127485 gtacacaagtgacagttatg 127466
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>gb|AC113272.11| Mus musculus chromosome 1, clone RP23-379C24, complete sequence
          Length = 170622

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 7     caagtgacagttatgctact 26
             ||||||||||||||||||||
Sbjct: 58856 caagtgacagttatgctact 58837
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>emb|BX294013.1|NCX4G11 Neurospora crassa DNA linkage group V Cosmid contig X4G11
          Length = 119154

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 268   ccaggaaatggattacccaa 287
             ||||||||||||||||||||
Sbjct: 64002 ccaggaaatggattacccaa 63983
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>emb|AL117390.1|SPAC1805 S.pombe chromosome I cosmid c1805
          Length = 36514

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 132   aaatcattaaaccaaatatt 151
             ||||||||||||||||||||
Sbjct: 32162 aaatcattaaaccaaatatt 32143
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>gb|AY967522.1| Schmidtea mediterranea clone HE.3.07A mRNA sequence
          Length = 996

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 126 cacaacaaatcattaaaccaaata 149
           ||||||| ||||||||||||||||
Sbjct: 74  cacaacatatcattaaaccaaata 97
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>gb|AC154470.2| Mus musculus BAC clone RP23-193P13 from chromosome 13, complete
             sequence
          Length = 216294

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 2     gtacacaagtgacagttatg 21
             ||||||||||||||||||||
Sbjct: 64545 gtacacaagtgacagttatg 64526
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>emb|AL133157.1|SPAC1B2 S.pombe chromosome I cosmid c1B2
          Length = 13599

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 132 aaatcattaaaccaaatatt 151
           ||||||||||||||||||||
Sbjct: 363 aaatcattaaaccaaatatt 344
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>gb|AY066996.1| Schmidtea mediterranea clone H.19.8f unknown mRNA sequence
          Length = 707

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 126 cacaacaaatcattaaaccaaata 149
           ||||||| ||||||||||||||||
Sbjct: 84  cacaacatatcattaaaccaaata 107
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>emb|AL772290.3| Mouse DNA sequence from clone RP23-66O4 on chromosome 4, complete
             sequence
          Length = 110623

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 176   aaaatactttccattgtaaagatt 199
             |||||||||||||||| |||||||
Sbjct: 39334 aaaatactttccattgcaaagatt 39311


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,905,709
Number of Sequences: 3902068
Number of extensions: 3905709
Number of successful extensions: 59759
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 59730
Number of HSP's gapped (non-prelim): 29
length of query: 293
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 271
effective length of database: 17,147,199,772
effective search space: 4646891138212
effective search space used: 4646891138212
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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