ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd25j24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ECP_PANTR (P47780) Eosinophil cationic protein precursor (EC 3.1... 31 2.9
2ECP_GORGO (P47778) Eosinophil cationic protein precursor (EC 3.1... 30 5.0
3PA2GX_HUMAN (O15496) Group 10 secretory phospholipase A2 precurs... 30 5.0

>ECP_PANTR (P47780) Eosinophil cationic protein precursor (EC 3.1.27.-) (ECP)|
           (Ribonuclease 3) (RNase 3)
          Length = 160

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 5/78 (6%)
 Frame = +2

Query: 176 MNHFLQTPPN-----RVCNTSY*M*CKNEMQLKRRYTSNVINLKTKLAHVCAHQKHIQIC 340
           + H    PP      RV N +Y   CKN+    R   +NV+N+    +  C H + +  C
Sbjct: 40  IQHISLNPPRCTIAMRVIN-NYRWRCKNQNTFLRTTFANVVNVCGNQSIRCPHNRTLNNC 98

Query: 341 TDW*YITELIHIDLYGFG 394
               +   L+H DL   G
Sbjct: 99  HQSRFRVPLLHCDLINPG 116



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>ECP_GORGO (P47778) Eosinophil cationic protein precursor (EC 3.1.27.-) (ECP)|
           (Ribonuclease 3) (RNase 3)
          Length = 160

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 5/78 (6%)
 Frame = +2

Query: 176 MNHFLQTPPN-----RVCNTSY*M*CKNEMQLKRRYTSNVINLKTKLAHVCAHQKHIQIC 340
           + H    PP      RV N +Y   CKN+    R   +NV+N+    +  C H + +  C
Sbjct: 40  IQHISLNPPRCTIAMRVIN-NYRWRCKNQNTFLRTTFANVVNVCGNQSIRCLHNRTLNNC 98

Query: 341 TDW*YITELIHIDLYGFG 394
               +   L+H DL   G
Sbjct: 99  HRSRFRVPLLHCDLINPG 116



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>PA2GX_HUMAN (O15496) Group 10 secretory phospholipase A2 precursor (EC 3.1.1.4)|
           (Group X secretory phospholipase A2)
           (Phosphatidylcholine 2-acylhydrolase GX) (GX sPLA2)
           (sPLA2-X)
          Length = 155

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +2

Query: 416 KEIVKYCTKG*CNTYHVC-KQVHSSRCSSPTHEITWQRINANIHCGP*E 559
           ++ + +C    C+ +  C  +   + CS  T   +WQ +N ++ CGP E
Sbjct: 68  RDAIDWC----CHGHDCCYTRAEEAGCSPKTERYSWQCVNQSVLCGPAE 112


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,799,326
Number of Sequences: 219361
Number of extensions: 1599675
Number of successful extensions: 2921
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2915
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4929664480
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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