ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd25j21 |
|---|---|
| Clone Library Name | barley_pub |
>ADO3_ARATH (Q9C9W9) Adagio protein 3 (Flavin-binding kelch repeat F-box| protein 1) (F-box only protein 2a) (FBX2a) Length = 619 Score = 139 bits (350), Expect = 3e-33 Identities = 63/84 (75%), Positives = 70/84 (83%) Frame = -1 Query: 415 RIIIFGGSIAGLHSPAELFLLDPAEEKPTWRILNVPGQPPKFAWGHSTCXXXXXXXXXXX 236 R+IIFGGSIAGLHSP++LFL+DPAEEKP+WRILNVPG+PPK AWGHSTC Sbjct: 535 RVIIFGGSIAGLHSPSQLFLIDPAEEKPSWRILNVPGKPPKLAWGHSTCVVGGTRVLVLG 594 Query: 235 GHSGEEWILNELHELCLASRPDED 164 GH+GEEWILNELHELCLASR D D Sbjct: 595 GHTGEEWILNELHELCLASRQDSD 618 Score = 33.5 bits (75), Expect = 0.20 Identities = 15/47 (31%), Positives = 25/47 (53%) Frame = -1 Query: 415 RIIIFGGSIAGLHSPAELFLLDPAEEKPTWRILNVPGQPPKFAWGHS 275 R+++FGG + + F+L+ E P W+ + V PP WGH+ Sbjct: 316 RLVLFGGEGVNMQPLDDTFVLNLDAECPEWQRVRVTSSPPG-RWGHT 361 Score = 29.3 bits (64), Expect = 3.7 Identities = 15/47 (31%), Positives = 24/47 (51%) Frame = -1 Query: 415 RIIIFGGSIAGLHSPAELFLLDPAEEKPTWRILNVPGQPPKFAWGHS 275 ++++ GG ++ FLLD +KPTW+ + PP GHS Sbjct: 421 KLVVSGGCTDAGVLLSDTFLLDLTTDKPTWKEIPTSWAPPS-RLGHS 466
>ADO1_ARATH (Q94BT6) Adagio protein 1 (Protein ZEITLUPE) (LOV kelch protein 1)| (Flavin-binding kelch repeat F-box protein 1-like protein 2) (FKF1-like protein 2) (F-box only protein 2b) (FBX2b) (Clock-associated PAS protein ZTL) Length = 609 Score = 117 bits (293), Expect = 1e-26 Identities = 51/79 (64%), Positives = 63/79 (79%) Frame = -1 Query: 415 RIIIFGGSIAGLHSPAELFLLDPAEEKPTWRILNVPGQPPKFAWGHSTCXXXXXXXXXXX 236 RI+IFGGS+AGLHS ++L+LLDP E+KPTWRILN+PG+PP+FAWGH TC Sbjct: 528 RILIFGGSVAGLHSASQLYLLDPTEDKPTWRILNIPGRPPRFAWGHGTCVVGGTRAIVLG 587 Query: 235 GHSGEEWILNELHELCLAS 179 G +GEEW+L+ELHEL LAS Sbjct: 588 GQTGEEWMLSELHELSLAS 606 Score = 39.7 bits (91), Expect = 0.003 Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 1/82 (1%) Frame = -1 Query: 415 RIIIFGGSIAGLHSPAELFLLDPAEEKPTWRILNVPGQPPKFAWGHS-TCXXXXXXXXXX 239 R+++FGG + + F+LD + P W+ + V PP WGH+ TC Sbjct: 304 RVVLFGGEGVNMQPMNDTFVLDLNSDYPEWQHVKV-SSPPPGRWGHTLTCVNGSNLVVFG 362 Query: 238 XGHSGEEWILNELHELCLASRP 173 G++ +LN++ L L ++P Sbjct: 363 G--CGQQGLLNDVFVLNLDAKP 382 Score = 28.5 bits (62), Expect = 6.4 Identities = 14/40 (35%), Positives = 21/40 (52%) Frame = -1 Query: 415 RIIIFGGSIAGLHSPAELFLLDPAEEKPTWRILNVPGQPP 296 ++I+ GG ++ FLLD + EKP WR + PP Sbjct: 409 KLIVSGGCADSGVLLSDTFLLDLSIEKPVWREIPAAWTPP 448 Score = 28.1 bits (61), Expect = 8.3 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 3/42 (7%) Frame = -1 Query: 415 RIIIFGGSIAG---LHSPAELFLLDPAEEKPTWRILNVPGQP 299 +I++FGG +++F +D +EE+P WR + G P Sbjct: 462 KILMFGGLAKSGPLKFRSSDVFTMDLSEEEPCWRCVTGSGMP 503
>ADO2_ARATH (Q8W420) Adagio protein 2 (LOV kelch protein 2) (Flavin-binding| kelch repeat F-box protein 1-like protein 1) (FKF1-like protein 1) (F-box only protein 2c) (FBX2c) Length = 611 Score = 107 bits (267), Expect = 1e-23 Identities = 49/79 (62%), Positives = 59/79 (74%) Frame = -1 Query: 415 RIIIFGGSIAGLHSPAELFLLDPAEEKPTWRILNVPGQPPKFAWGHSTCXXXXXXXXXXX 236 RI+IFGGS+AGL S ++L+LLDP EEKP WRILNV G PP+FAWGH+TC Sbjct: 527 RILIFGGSVAGLDSASQLYLLDPNEEKPAWRILNVQGGPPRFAWGHTTCVVGGTRLVVLG 586 Query: 235 GHSGEEWILNELHELCLAS 179 G +GEEW+LNE HEL LA+ Sbjct: 587 GQTGEEWMLNEAHELLLAT 605 Score = 37.0 bits (84), Expect = 0.018 Identities = 17/47 (36%), Positives = 24/47 (51%) Frame = -1 Query: 415 RIIIFGGSIAGLHSPAELFLLDPAEEKPTWRILNVPGQPPKFAWGHS 275 RI+IFGG + + F+LD P W+ + V PP WGH+ Sbjct: 305 RIVIFGGEGVNMQPMNDTFVLDLGSSSPEWKSVLV-SSPPPGRWGHT 350 Score = 30.8 bits (68), Expect = 1.3 Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%) Frame = -1 Query: 415 RIIIFGGSIAGLHSPA-ELFLLDPAEEKPTWRILNVPGQPPKFAWGHSTC 269 R+++FGG G H ++FLLD + P+WR ++ P +W HS+C Sbjct: 358 RLVVFGGY--GSHGLLNDVFLLDLDADPPSWREVSGLAPPIPRSW-HSSC 404 Score = 29.6 bits (65), Expect = 2.9 Identities = 14/40 (35%), Positives = 22/40 (55%) Frame = -1 Query: 415 RIIIFGGSIAGLHSPAELFLLDPAEEKPTWRILNVPGQPP 296 ++I+ GG ++ FLLD + + P WR + VP PP Sbjct: 410 KLIVSGGCADSGALLSDTFLLDLSMDIPAWREIPVPWTPP 449
>GFA1_CANAL (P53704) Glucosamine--fructose-6-phosphate aminotransferase| [isomerizing] (EC 2.6.1.16) (Hexosephosphate aminotransferase) (D-fructose-6-phosphate amidotransferase) (GFAT) Length = 712 Score = 29.6 bits (65), Expect = 2.9 Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 5/73 (6%) Frame = +2 Query: 143 GTST*SSIFVGPACEAELVELIQDPLLSAVSTKNQDPSATNHAGAVSPSELGWLP----- 307 GT S + VG + +L D A NH GA S +ELG++P Sbjct: 203 GTRKGSPLLVGVKTDKKLKVDFVDVEFEAQQQHRPQQPQINHNGATSAAELGFIPVAPGE 262 Query: 308 RDVQDSPCRFFLS 346 ++++ S R FLS Sbjct: 263 QNLRTSQSRAFLS 275
>ACOT4_HUMAN (Q8N9L9) Acyl-coenzyme A thioesterase 4 (EC 3.1.2.2) (Acyl-CoA| thioesterase 4) (Peroxisomal acyl coenzyme A thioester hydrolase Ib) (Peroxisomal long-chain acyl-coA thioesterase Ib) (PTE-Ib) (PTE-2b) Length = 421 Score = 29.6 bits (65), Expect = 2.9 Identities = 17/35 (48%), Positives = 19/35 (54%) Frame = -1 Query: 400 GGSIAGLHSPAELFLLDPAEEKPTWRILNVPGQPP 296 GGS AGL L+ L+P EKP WR L Q P Sbjct: 69 GGSFAGLEPMGLLWALEP--EKPFWRFLKRDVQIP 101
>ZN235_MOUSE (Q61116) Zinc finger protein 235 (Zinc finger protein 93) (Zfp-93)| Length = 645 Score = 29.3 bits (64), Expect = 3.7 Identities = 25/59 (42%), Positives = 30/59 (50%), Gaps = 9/59 (15%) Frame = +3 Query: 156 NHPSSSG----LLAR-QSSWS----SFRIHSSPLCPPRTKTLVPPTTQVLCPQANLGGC 305 NH SSS L R QSSWS S R + CP +TLV +Q+L P N+ GC Sbjct: 132 NHSSSSDNQEFLSGRAQSSWSKAHFSERWNHEKHCP---QTLVKTKSQLLAPGVNILGC 187
>IP5P3_ARATH (Q9LR47) Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2 (EC| 3.1.3.56) (Cotyledon vascular pattern 2 protein) Length = 609 Score = 28.5 bits (62), Expect = 6.4 Identities = 13/25 (52%), Positives = 14/25 (56%) Frame = +3 Query: 48 QTPFRFFCTHFCKKS*EGDEMKVRS 122 QT F F CTH EGDE+K S Sbjct: 396 QTSFCFVCTHLTSGQKEGDELKRNS 420
>CATA_RHOCA (P37743) Peroxidase/catalase (EC 1.11.1.6) (Catalase-peroxidase)| Length = 576 Score = 25.8 bits (55), Expect(2) = 8.0 Identities = 12/27 (44%), Positives = 16/27 (59%) Frame = +3 Query: 162 PSSSGLLARQSSWSSFRIHSSPLCPPR 242 P SS +A +W R S+P+CPPR Sbjct: 407 PGSSCCIA---TWGRRRATSAPMCPPR 430 Score = 20.8 bits (42), Expect(2) = 8.0 Identities = 7/13 (53%), Positives = 8/13 (61%) Frame = +1 Query: 283 PKRTWVAAPGRSG 321 P R W A PG +G Sbjct: 428 PPRIWSAGPGAAG 440
>BSL3_ARATH (Q9SHS7) Serine/threonine-protein phosphatase BSL3 (EC 3.1.3.16)| (BSU1-like protein 3) Length = 715 Score = 28.1 bits (61), Expect = 8.3 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%) Frame = -1 Query: 412 IIIFGG-SIAGLHSPAELFLLDPAEEKPTWRILNVPGQPPKFAWGH 278 ++I GG AGL S +L +LD +++P W + V G P +GH Sbjct: 165 VVIQGGIGPAGL-SAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGH 209
>SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1| Length = 888 Score = 28.1 bits (61), Expect = 8.3 Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 1/49 (2%) Frame = +3 Query: 150 RHNHPSSSGLLARQSSWSSFRIHSSPLCPP-RTKTLVPPTTQVLCPQAN 293 R SS+ L SS SS R S P PP RT + P T+ L P A+ Sbjct: 342 RRRRRSSASLSGSSSSSSSSRSRSPPKKPPKRTVSSPPRKTRRLSPSAS 390
>BSL2_ARATH (Q9SJF0) Serine/threonine-protein phosphatase BSL2 (EC 3.1.3.16)| (BSU1-like protein 2) Length = 1088 Score = 28.1 bits (61), Expect = 8.3 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%) Frame = -1 Query: 412 IIIFGG-SIAGLHSPAELFLLDPAEEKPTWRILNVPGQPPKFAWGH 278 ++I GG AGL S +L +LD +++P W + V G P +GH Sbjct: 217 VVIQGGIGPAGL-SAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGH 261 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 60,947,785 Number of Sequences: 219361 Number of extensions: 1191901 Number of successful extensions: 2986 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 2874 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2983 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2169600302 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
