ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbasd25j17 |
|---|---|
| Clone Library Name | barley_pub |
>RBL1_HUMAN (P28749) Retinoblastoma-like protein 1 (107 kDa| retinoblastoma-associated protein) (PRB1) (P107) Length = 1068 Score = 33.9 bits (76), Expect = 0.31 Identities = 22/68 (32%), Positives = 33/68 (48%) Frame = -2 Query: 527 SPKKVSSSHNVYISPLRQTKKDALLSPSSRSFYACIGESTHAYQSSSEDLAAINNCLNYT 348 SP+++S H++YISP K + L+P S Y G S S+ L INN + Sbjct: 975 SPRRISQQHSIYISP---HKNGSGLTPRSALLYKFNG-------SPSKSLKDINNMIRQG 1024 Query: 347 TRRINTRI 324 +R R+ Sbjct: 1025 EQRTKKRV 1032
>RBL1_MOUSE (Q64701) Retinoblastoma-like protein 1 (107 kDa| retinoblastoma-associated protein) (PRB1) (P107) Length = 1063 Score = 32.7 bits (73), Expect = 0.68 Identities = 21/68 (30%), Positives = 33/68 (48%) Frame = -2 Query: 527 SPKKVSSSHNVYISPLRQTKKDALLSPSSRSFYACIGESTHAYQSSSEDLAAINNCLNYT 348 SP+++S H++Y+SP K A L+P S Y G S S+ L INN + Sbjct: 970 SPRRISQQHSLYVSP---HKNGAGLTPRSALLYKFNG-------SPSKSLKDINNMIRQG 1019 Query: 347 TRRINTRI 324 ++ R+ Sbjct: 1020 EQKTKKRV 1027
>RBL2_RAT (O55081) Retinoblastoma-like protein 2 (130 kDa| retinoblastoma-associated protein) (PRB2) (P130) (RBR-2) (PPAR-alpha-interacting complex protein 128) (PRIC128) Length = 1135 Score = 31.2 bits (69), Expect = 2.0 Identities = 17/35 (48%), Positives = 23/35 (65%), Gaps = 2/35 (5%) Frame = -2 Query: 527 SPKKV--SSSHNVYISPLRQTKKDALLSPSSRSFY 429 SP++V S SH +YISP K +A+LSP + FY Sbjct: 1040 SPRRVQLSQSHPIYISP---HKNEAMLSPREKIFY 1071
>PRP4B_MOUSE (Q61136) Serine/threonine-protein kinase PRP4 homolog (EC 2.7.11.1)| (PRP4 pre-mRNA-processing factor 4 homolog) (Pre-mRNA protein kinase) Length = 1007 Score = 30.0 bits (66), Expect = 4.4 Identities = 15/39 (38%), Positives = 21/39 (53%) Frame = +2 Query: 392 SSDKHGCFHRYKHKNSSNLVKAMHPSWFDAEEKYKHYGK 508 S +KH + KHK+ S K H S D ++K+KH K Sbjct: 37 SQNKHSRHKKKKHKHRSKHKKHKHSSEEDRDKKHKHKHK 75
>PRP4B_HUMAN (Q13523) Serine/threonine-protein kinase PRP4 homolog (EC 2.7.11.1)| (PRP4 pre-mRNA-processing factor 4 homolog) (PRP4 kinase) Length = 1007 Score = 30.0 bits (66), Expect = 4.4 Identities = 15/39 (38%), Positives = 21/39 (53%) Frame = +2 Query: 392 SSDKHGCFHRYKHKNSSNLVKAMHPSWFDAEEKYKHYGK 508 S +KH + KHK+ S K H S D ++K+KH K Sbjct: 36 SQNKHSRHKKKKHKHRSKHKKHKHSSEEDKDKKHKHKHK 74
>YDZ5_SCHPO (O13712) Protein C14C4.05c in chromosome I| Length = 844 Score = 30.0 bits (66), Expect = 4.4 Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 1/64 (1%) Frame = -2 Query: 533 DMSPKKVSSSHNVYISPLRQTKKDALLSPSS-RSFYACIGESTHAYQSSSEDLAAINNCL 357 ++ PK S S +VY SP++ + +PS+ S +S+ +Y S++ +NN + Sbjct: 261 NLKPKFTSRSSSVYASPIKSSLNSLECNPSNLLSVRKNFQQSSDSYLKSNKSFDQLNNLV 320 Query: 356 NYTT 345 +T Sbjct: 321 GLST 324
>GIDB_LEGPL (Q5WSS3) Methyltransferase gidB (EC 2.1.-.-) (Glucose-inhibited| division protein B) Length = 208 Score = 30.0 bits (66), Expect = 4.4 Identities = 17/56 (30%), Positives = 26/56 (46%) Frame = +1 Query: 76 YSLTHRCTVEAFEFTHLFRRTEGLPWVRELYTGDAHLFAQESGPGLPFLDKKLNEP 243 Y+LT +E HLF LPW++ H+ +GPGLP + + +P Sbjct: 41 YNLTAIRDIETMVSKHLFDSLAILPWIK-----GNHIIDVGTGPGLPGIPLAIAKP 91
>GIDB_LEGPH (Q5ZRJ1) Methyltransferase gidB (EC 2.1.-.-) (Glucose-inhibited| division protein B) Length = 208 Score = 30.0 bits (66), Expect = 4.4 Identities = 17/56 (30%), Positives = 26/56 (46%) Frame = +1 Query: 76 YSLTHRCTVEAFEFTHLFRRTEGLPWVRELYTGDAHLFAQESGPGLPFLDKKLNEP 243 Y+LT +E HLF LPW++ H+ +GPGLP + + +P Sbjct: 41 YNLTAIRDIETMVSKHLFDSLAILPWIK-----GNHIIDVGTGPGLPGIPLAIAKP 91
>GIDB_LEGPA (Q5X0Z7) Methyltransferase gidB (EC 2.1.-.-) (Glucose-inhibited| division protein B) Length = 208 Score = 30.0 bits (66), Expect = 4.4 Identities = 17/56 (30%), Positives = 26/56 (46%) Frame = +1 Query: 76 YSLTHRCTVEAFEFTHLFRRTEGLPWVRELYTGDAHLFAQESGPGLPFLDKKLNEP 243 Y+LT +E HLF LPW++ H+ +GPGLP + + +P Sbjct: 41 YNLTAIRDIETMVSKHLFDSLAILPWIK-----GNHIIDVGTGPGLPGIPLAIAKP 91
>KCY1_BORGA (Q662N3) Cytidylate kinase 1 (EC 2.7.4.14) (CK 1) (Cytidine| monophosphate kinase 1) (CMP kinase 1) Length = 221 Score = 30.0 bits (66), Expect = 4.4 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 2/52 (3%) Frame = +2 Query: 392 SSDKHGCFHRYKHKNSSNLVKAMHPSWF--DAEEKYKHYGKMRLSLGTYLVD 541 +S K RYK +N + ++ + + D +K K YGK++LS G + +D Sbjct: 145 ASVKVRALRRYKQRNGNETLEELERTLKIRDDVDKRKQYGKLKLSKGVFYLD 196
>KCY1_BORBU (O51154) Cytidylate kinase 1 (EC 2.7.4.14) (CK 1) (Cytidine| monophosphate kinase 1) (CMP kinase 1) Length = 221 Score = 30.0 bits (66), Expect = 4.4 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 2/52 (3%) Frame = +2 Query: 392 SSDKHGCFHRYKHKNSSNLVKAMHPSWF--DAEEKYKHYGKMRLSLGTYLVD 541 +S K RYK +N + ++ + + D +K K YGK++LS G + +D Sbjct: 145 ASVKVRALRRYKQRNGNETLEELERTLKRRDDVDKKKQYGKLKLSKGVFYLD 196
>PPID_ECOLI (P0ADY1) Peptidyl-prolyl cis-trans isomerase D (EC 5.2.1.8) (PPIase| D) (Rotamase D) Length = 623 Score = 29.3 bits (64), Expect = 7.6 Identities = 24/101 (23%), Positives = 40/101 (39%), Gaps = 8/101 (7%) Frame = -2 Query: 539 LPDMSPKKVSSSHNVYISPLRQTKKDALLSPSSRSFYACIGESTHAYQSSSEDLAAINNC 360 L D+ P KV S V + K + L ++YA + + A + +E LA Sbjct: 353 LDDIQPAKVKSLDEVRDDIAAKVKHEKALD----AYYALQQKVSDAASNDTESLAGAEQA 408 Query: 359 LN--------YTTRRINTRINFDMVSDSVVAGSLGQPNGVP 261 ++ + +NF V+D++ G L NG P Sbjct: 409 AGVKATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAP 449
>PPID_ECOL6 (P0ADY2) Peptidyl-prolyl cis-trans isomerase D (EC 5.2.1.8) (PPIase| D) (Rotamase D) Length = 623 Score = 29.3 bits (64), Expect = 7.6 Identities = 24/101 (23%), Positives = 40/101 (39%), Gaps = 8/101 (7%) Frame = -2 Query: 539 LPDMSPKKVSSSHNVYISPLRQTKKDALLSPSSRSFYACIGESTHAYQSSSEDLAAINNC 360 L D+ P KV S V + K + L ++YA + + A + +E LA Sbjct: 353 LDDIQPAKVKSLDEVRDDIAAKVKHEKALD----AYYALQQKVSDAASNDTESLAGAEQA 408 Query: 359 LN--------YTTRRINTRINFDMVSDSVVAGSLGQPNGVP 261 ++ + +NF V+D++ G L NG P Sbjct: 409 AGVKATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAP 449
>HP20_TAMSI (Q06575) Hibernation-associated plasma protein HP-20 precursor| (Hibernator-specific blood complex, 20 kDa subunit) Length = 196 Score = 29.3 bits (64), Expect = 7.6 Identities = 17/41 (41%), Positives = 19/41 (46%), Gaps = 2/41 (4%) Frame = -2 Query: 317 DMVSDSVVAGSLGQPN--GVPASSDPAGSFSFLSRKGNPGP 201 D VS S G +G P GVP P G R G+PGP Sbjct: 19 DQVSCSGPPGPVGYPGVPGVPGPRGPPGQPGAAGRPGDPGP 59
>PODO_HUMAN (Q9NP85) Podocin| Length = 383 Score = 29.3 bits (64), Expect = 7.6 Identities = 18/36 (50%), Positives = 20/36 (55%) Frame = +1 Query: 193 QESGPGLPFLDKKLNEPAGSEEAGTPFGWPRLPATT 300 QE+GP EP+GS AGTP G PR PA T Sbjct: 39 QEAGP----------EPSGSGRAGTP-GEPRAPAAT 63
>A2MG_PONPY (Q5R4N8) Alpha-2-macroglobulin precursor (Alpha-2-M)| Length = 1474 Score = 29.3 bits (64), Expect = 7.6 Identities = 15/47 (31%), Positives = 24/47 (51%) Frame = -2 Query: 431 YACIGESTHAYQSSSEDLAAINNCLNYTTRRINTRINFDMVSDSVVA 291 YA + T +SEDL + N + + T++ N + F D+VVA Sbjct: 1211 YALLAYLTAQPAPTSEDLTSATNIVKWITKQQNAQGGFSSTQDTVVA 1257
>CRIM1_BRARE (Q7T3Q2) Cysteine-rich motor neuron 1 protein precursor (CRIM-1)| Length = 1027 Score = 28.9 bits (63), Expect = 9.9 Identities = 15/41 (36%), Positives = 22/41 (53%) Frame = +1 Query: 211 LPFLDKKLNEPAGSEEAGTPFGWPRLPATTESLTMSKFIRV 333 +P+LD K P SE+AG + W LP LT++ + V Sbjct: 914 MPYLDGKT--PLPSEDAGLHWAWVALPVLMMMLTLAALLLV 952
>ARRC_HUMAN (P36575) Arrestin-C (Cone arrestin) (Retinal cone arrestin-3)| (X-arrestin) (C-arrestin) Length = 388 Score = 28.9 bits (63), Expect = 9.9 Identities = 18/64 (28%), Positives = 29/64 (45%) Frame = -2 Query: 485 PLRQTKKDALLSPSSRSFYACIGESTHAYQSSSEDLAAINNCLNYTTRRINTRINFDMVS 306 P QT + LLS A + H + +INNC N ++I +I+ D ++ Sbjct: 179 PSAQTIRRFLLSAQPLQLQAWMDREVHYHGEPISVNVSINNCTNKVIKKI--KISVDQIT 236 Query: 305 DSVV 294 D V+ Sbjct: 237 DVVL 240 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 83,334,538 Number of Sequences: 219361 Number of extensions: 1775095 Number of successful extensions: 4850 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 4331 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4850 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4373119116 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
