ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd25j03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CISY3_ARATH (Q9SJH7) Citrate synthase 3, peroxisomal precursor (... 33 0.37
2NOTCH_XENLA (P21783) Neurogenic locus notch protein homolog prec... 32 0.82
3FCERA_HUMAN (P12319) High affinity immunoglobulin epsilon recept... 29 6.9
4NOTC2_HUMAN (Q04721) Neurogenic locus notch homolog protein 2 pr... 29 6.9
5NOTC2_MOUSE (O35516) Neurogenic locus notch homolog protein 2 pr... 28 9.1

>CISY3_ARATH (Q9SJH7) Citrate synthase 3, peroxisomal precursor (EC 2.3.3.1)|
          Length = 509

 Score = 33.1 bits (74), Expect = 0.37
 Identities = 15/19 (78%), Positives = 18/19 (94%)
 Frame = -1

Query: 472 LGQIATSNATRRRRAGSSL 416
           LGQ+ATSNA+RRR AGSS+
Sbjct: 491 LGQVATSNASRRRLAGSSV 509



to top

>NOTCH_XENLA (P21783) Neurogenic locus notch protein homolog precursor (XOTCH|
           protein)
          Length = 2524

 Score = 32.0 bits (71), Expect = 0.82
 Identities = 18/49 (36%), Positives = 23/49 (46%)
 Frame = -1

Query: 229 GTCRFLHCGRYECTHLQFPSSSLRAYSVISCFSKKERGGGVIVDGVSVF 83
           GTCR      Y+CT L   S      ++  C S   R GG  VDGV+ +
Sbjct: 230 GTCRQTDDTSYDCTCLPGFSGQNCEENIDDCPSNNCRNGGTCVDGVNTY 278



to top

>FCERA_HUMAN (P12319) High affinity immunoglobulin epsilon receptor|
           alpha-subunit precursor (FcERI) (IgE Fc receptor,
           alpha-subunit) (Fc-epsilon RI-alpha)
          Length = 257

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = -1

Query: 220 RFLHCGRYECTHLQFPSSSLRAYSVISCFSKKERGGGVIVDGVSVFLRVH 71
           +F   G Y+C H Q   S      V S +   +    V+++G  +FLR H
Sbjct: 84  KFEDSGEYKCQHQQVNESEPVYLEVFSDWLLLQASAEVVMEGQPLFLRCH 133



to top

>NOTC2_HUMAN (Q04721) Neurogenic locus notch homolog protein 2 precursor (Notch|
           2) (hN2) [Contains: Notch 2 extracellular truncation;
           Notch 2 intracellular domain]
          Length = 2471

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = -1

Query: 229 GTCRFLHCGRYECTHLQFPSSSLRAYSVISCFSKKERGGGVIVDGVSVF 83
           GTCR      +EC  L     S    ++  C + + + GGV VDGV+ +
Sbjct: 234 GTCRQTGDFTFECNCLPGFEGSTCERNIDDCPNHRCQNGGVCVDGVNTY 282



to top

>NOTC2_MOUSE (O35516) Neurogenic locus notch homolog protein 2 precursor (Notch|
           2) (Motch B) [Contains: Notch 2 extracellular
           truncation; Notch 2 intracellular domain]
          Length = 2470

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = -1

Query: 229 GTCRFLHCGRYECTHLQFPSSSLRAYSVISCFSKKERGGGVIVDGVSVF 83
           GTCR       EC  L     S    ++  C + K + GGV VDGV+ +
Sbjct: 232 GTCRQTGDFTLECNCLPGFEGSTCERNIDDCPNHKCQNGGVCVDGVNTY 280


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,171,260
Number of Sequences: 219361
Number of extensions: 1512752
Number of successful extensions: 3576
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3576
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3072927439
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top