ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd25j03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT016785.1| Zea mays clone Contig618 mRNA sequence 54 4e-04
2dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 54 4e-04
3dbj|AP004070.3| Oryza sativa (japonica cultivar-group) genomic D... 54 4e-04
4dbj|AK120755.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 4e-04
5dbj|AK058734.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 4e-04
6gb|AY105153.1| Zea mays PCO138377 mRNA sequence 54 4e-04
7gb|AC166174.2| Mus musculus BAC clone RP23-41B11 from chromosome... 44 0.41
8gb|AC127339.3| Mus musculus BAC clone RP23-180G16 from chromosom... 44 0.41
9gb|AC112945.9| Mus musculus chromosome 15, clone RP23-382O21, co... 42 1.6
10gb|AC127315.4| Mus musculus BAC clone RP23-218F21 from chromosom... 42 1.6
11gb|AC163638.2| Mus musculus BAC clone RP23-188H10 from chromosom... 42 1.6
12gb|AC145372.7| Medicago truncatula clone mth2-5f4, complete sequ... 42 1.6
13gb|AC024260.4|AC024260 Arabidopsis thaliana chromosome 1 BAC F22... 42 1.6
14gb|AC018748.3|T3F20 Sequence of BAC T3F20 from Arabidopsis thali... 42 1.6
15emb|AL117190.6|CNS01DRF Human chromosome 14 DNA sequence BAC R-1... 42 1.6
16emb|BX005058.3| Zebrafish DNA sequence from clone CH211-112K3 in... 42 1.6
17gb|AC100386.29| Mus musculus chromosome 10, clone RP23-132J19, c... 42 1.6
18emb|CR352249.24| Zebrafish DNA sequence from clone DKEY-97O18 in... 42 1.6
19emb|AL732526.8| Mouse DNA sequence from clone RP23-338O4 on chro... 42 1.6
20emb|AL591911.8| Mouse DNA sequence from clone RP23-216D20 on chr... 42 1.6
21gb|AC152949.1| Mus musculus 10 BAC RP23-184H3 (Roswell Park Canc... 40 6.4
22ref|NM_187121.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.4
23gb|AF109906.1|MMHC310M6 Mus musculus MHC class III region RD gen... 40 6.4
24gb|AC158554.6| Mus musculus chromosome 15, clone RP23-353O17, co... 40 6.4
25gb|AC117224.3| Mus musculus BAC clone RP23-356N8 from chromosome... 40 6.4
26gb|AC124421.4| Mus musculus BAC clone RP24-323H7 from chromosome... 40 6.4
27gb|AC122511.5| Mus musculus BAC clone RP24-446A8 from chromosome... 40 6.4
28gb|AC127414.4| Mus musculus BAC clone RP23-246P24 from chromosom... 40 6.4
29emb|Z81552.1|CEF56G4 Caenorhabditis elegans Cosmid F56G4, comple... 40 6.4
30gb|AC125487.3| Mus musculus BAC clone RP23-38L16 from 12, comple... 40 6.4
31gb|AC114915.3| Mus musculus BAC clone RP23-54K21 from 2, complet... 40 6.4
32gb|AC131723.1| Mus musculus BAC clone RP23-144E24 from 1, comple... 40 6.4
33gb|AC122248.5| Mus musculus BAC clone RP23-156N18 from 7, comple... 40 6.4
34gb|AC147428.6| Medicago truncatula clone mth2-34i10, complete se... 40 6.4
35gb|AC157596.5| Mus musculus BAC clone RP23-240B9 from chromosome... 40 6.4
36emb|AL445528.16| Human DNA sequence from clone RP11-419N10 on ch... 40 6.4
37emb|AL159166.12| Human DNA sequence from clone RP3-527G5 on chro... 40 6.4
38emb|AL139398.20| Human DNA sequence from clone RP11-528B10 on ch... 40 6.4
39gb|AC154487.2| Mus musculus BAC clone RP24-119I4 from chromosome... 40 6.4
40gb|AC153926.10| Mus musculus 10 BAC RP23-68M7 (Roswell Park Canc... 40 6.4
41emb|AL596130.13| Mouse DNA sequence from clone RP23-209O5 on chr... 40 6.4
42emb|AL669951.18| Mouse DNA sequence from clone RP23-94F11 on chr... 40 6.4
43gb|AC158604.5| Mus musculus 10 BAC RP23-130B2 (Roswell Park Canc... 40 6.4
44emb|AL954374.4| Mouse DNA sequence from clone RP23-445A5 on chro... 40 6.4
45gb|AC147892.2| Xenopus tropicalis clone CH216-35D21, complete se... 40 6.4
46gb|AC153788.7| Mus musculus chromosome 1, clone RP24-282H12, com... 40 6.4
47gb|AC022479.3|AC022479 Homo sapiens BAC clone RP11-217F11 from 3... 40 6.4
48dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
49dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
50gb|AC153136.3| Mus musculus BAC clone RP24-191P11 from chromosom... 40 6.4
51gb|AC148599.2| Xenopus tropicalis clone CH216-2G20, complete seq... 40 6.4
52gb|AC092988.6| Homo sapiens 3 BAC RP11-217F11 (Roswell Park Canc... 40 6.4
53gb|AC156448.2| Volvox carteri clone JGIAOBO-33O24, complete sequ... 40 6.4
54dbj|AP005252.5| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
55emb|CR626877.10| Zebrafish DNA sequence from clone DKEYP-114F9 i... 40 6.4
56emb|CT025759.14| Mouse DNA sequence from clone RP24-317H19 on ch... 40 6.4
57gb|AC164879.2| Mus musculus BAC clone RP23-354H10 from chromosom... 40 6.4
58gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.4
59emb|AL954826.3|CNS08CD2 Oryza sativa chromosome 12, . BAC OSJNBb... 40 6.4
60gb|AC122293.3| Mus musculus BAC clone RP23-257O9 from 10, comple... 40 6.4
61emb|AL928690.9| Mouse DNA sequence from clone RP23-443L19 on chr... 40 6.4
62gb|AY780259.1| Eucalyptus globulus subsp. globulus chloroplast, ... 40 6.4
63emb|AL596258.15| Mouse DNA sequence from clone RP23-226P4 on chr... 40 6.4 
>gb|BT016785.1| Zea mays clone Contig618 mRNA sequence
          Length = 1899

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 54/63 (85%)
 Strand = Plus / Minus

                                                                        
Query: 410  cttctacagggaagaaccggcacggcgacgcctcgtggcgtttgatgtagcgatctgacc 469
            ||||||||||| |||||| |||||||| ||||| || |||||||| || || | ||||||
Sbjct: 1578 cttctacagggcagaaccagcacggcggcgcctagttgcgtttgaggtggcaacctgacc 1519

               
Query: 470  aag 472
            |||
Sbjct: 1518 aag 1516
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 51/59 (86%)
 Strand = Plus / Minus

                                                                          
Query: 414     tacagggaagaaccggcacggcgacgcctcgtggcgtttgatgtagcgatctgaccaag 472
               ||||||| |||||| ||||| |||||||| || ||||| || ||||| |||||||||||
Sbjct: 7496503 tacagggcagaacctgcacgccgacgccttgttgcgttagaggtagcaatctgaccaag 7496445
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>dbj|AP004070.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1705_E12
          Length = 191416

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 51/59 (86%)
 Strand = Plus / Minus

                                                                        
Query: 414   tacagggaagaaccggcacggcgacgcctcgtggcgtttgatgtagcgatctgaccaag 472
             ||||||| |||||| ||||| |||||||| || ||||| || ||||| |||||||||||
Sbjct: 90209 tacagggcagaacctgcacgccgacgccttgttgcgttagaggtagcaatctgaccaag 90151
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>dbj|AK120755.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023007B06, full
            insert sequence
          Length = 1927

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 51/59 (86%)
 Strand = Plus / Minus

                                                                       
Query: 414  tacagggaagaaccggcacggcgacgcctcgtggcgtttgatgtagcgatctgaccaag 472
            ||||||| |||||| ||||| |||||||| || ||||| || ||||| |||||||||||
Sbjct: 1621 tacagggcagaacctgcacgccgacgccttgttgcgttagaggtagcaatctgaccaag 1563
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>dbj|AK058734.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-019-G01, full
           insert sequence
          Length = 1117

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 51/59 (86%)
 Strand = Plus / Minus

                                                                      
Query: 414 tacagggaagaaccggcacggcgacgcctcgtggcgtttgatgtagcgatctgaccaag 472
           ||||||| |||||| ||||| |||||||| || ||||| || ||||| |||||||||||
Sbjct: 871 tacagggcagaacctgcacgccgacgccttgttgcgttagaggtagcaatctgaccaag 813
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>gb|AY105153.1| Zea mays PCO138377 mRNA sequence
          Length = 2018

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 54/63 (85%)
 Strand = Plus / Minus

                                                                        
Query: 410  cttctacagggaagaaccggcacggcgacgcctcgtggcgtttgatgtagcgatctgacc 469
            ||||||||||| |||||| |||||||| ||||| || |||||||| || || | ||||||
Sbjct: 1645 cttctacagggcagaaccagcacggcggcgcctagttgcgtttgaggtggcaacctgacc 1586

               
Query: 470  aag 472
            |||
Sbjct: 1585 aag 1583
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>gb|AC166174.2| Mus musculus BAC clone RP23-41B11 from chromosome 12, complete sequence
          Length = 233084

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 176   aaattgcaagtgtgtgcattca 197
             ||||||||||||||||||||||
Sbjct: 47588 aaattgcaagtgtgtgcattca 47567
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>gb|AC127339.3| Mus musculus BAC clone RP23-180G16 from chromosome 5, complete sequence
          Length = 225376

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 109    cccctccccctctctctttttt 130
              ||||||||||||||||||||||
Sbjct: 120654 cccctccccctctctctttttt 120633
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>gb|AC112945.9| Mus musculus chromosome 15, clone RP23-382O21, complete sequence
          Length = 189335

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 109    cccctccccctctctcttttt 129
              |||||||||||||||||||||
Sbjct: 127126 cccctccccctctctcttttt 127106
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>gb|AC127315.4| Mus musculus BAC clone RP23-218F21 from chromosome 8, complete sequence
          Length = 207577

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 110    ccctccccctctctctttttt 130
              |||||||||||||||||||||
Sbjct: 143899 ccctccccctctctctttttt 143879
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>gb|AC163638.2| Mus musculus BAC clone RP23-188H10 from chromosome 14, complete sequence
          Length = 203950

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 110    ccctccccctctctctttttt 130
              |||||||||||||||||||||
Sbjct: 201134 ccctccccctctctctttttt 201154
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>gb|AC145372.7| Medicago truncatula clone mth2-5f4, complete sequence
          Length = 94647

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 105   atgacccctccccctctctct 125
             |||||||||||||||||||||
Sbjct: 62060 atgacccctccccctctctct 62080
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>gb|AC024260.4|AC024260 Arabidopsis thaliana chromosome 1 BAC F22G10 genomic sequence, complete
             sequence
          Length = 111936

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 166   atgaagatggaaattgcaagt 186
             |||||||||||||||||||||
Sbjct: 93139 atgaagatggaaattgcaagt 93119
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>gb|AC018748.3|T3F20 Sequence of BAC T3F20 from Arabidopsis thaliana chromosome 1, complete
             sequence
          Length = 99960

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 166   atgaagatggaaattgcaagt 186
             |||||||||||||||||||||
Sbjct: 52045 atgaagatggaaattgcaagt 52025
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>emb|AL117190.6|CNS01DRF Human chromosome 14 DNA sequence BAC R-123M6 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 165049

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 109    cccctccccctctctcttttt 129
              |||||||||||||||||||||
Sbjct: 102362 cccctccccctctctcttttt 102382
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>emb|BX005058.3| Zebrafish DNA sequence from clone CH211-112K3 in linkage group 17,
              complete sequence
          Length = 170139

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 110    ccctccccctctctctttttt 130
              |||||||||||||||||||||
Sbjct: 104516 ccctccccctctctctttttt 104496
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>gb|AC100386.29| Mus musculus chromosome 10, clone RP23-132J19, complete sequence
          Length = 216928

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 109   cccctccccctctctcttttt 129
             |||||||||||||||||||||
Sbjct: 64445 cccctccccctctctcttttt 64425
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>emb|CR352249.24| Zebrafish DNA sequence from clone DKEY-97O18 in linkage group 7,
             complete sequence
          Length = 180142

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 108   acccctccccctctctcttttttag 132
             ||||| |||||||||||||||||||
Sbjct: 65464 acccccccccctctctcttttttag 65440
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>emb|AL732526.8| Mouse DNA sequence from clone RP23-338O4 on chromosome 2, complete
             sequence
          Length = 165825

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 109   cccctccccctctctcttttt 129
             |||||||||||||||||||||
Sbjct: 48041 cccctccccctctctcttttt 48061
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>emb|AL591911.8| Mouse DNA sequence from clone RP23-216D20 on chromosome 2, complete
             sequence
          Length = 120937

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 109   cccctccccctctctcttttt 129
             |||||||||||||||||||||
Sbjct: 92861 cccctccccctctctcttttt 92881
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>gb|AC152949.1| Mus musculus 10 BAC RP23-184H3 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 206898

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 108   acccctccccctctctcttt 127
             ||||||||||||||||||||
Sbjct: 75248 acccctccccctctctcttt 75229
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>ref|NM_187121.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 375

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 108 acccctccccctctctcttt 127
           ||||||||||||||||||||
Sbjct: 373 acccctccccctctctcttt 354
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>gb|AF109906.1|MMHC310M6 Mus musculus MHC class III region RD gene, partial cds; Bf, C2, G9A,
             NG22, G9, HSP70, HSP70, HSC70t, and smRNP genes, complete
             cds; G7A gene, partial cds; and unknown genes
          Length = 158405

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 109   cccctccccctctctctttt 128
             ||||||||||||||||||||
Sbjct: 40317 cccctccccctctctctttt 40336
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>gb|AC158554.6| Mus musculus chromosome 15, clone RP23-353O17, complete sequence
          Length = 192019

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 106   tgacccctccccctctctct 125
             ||||||||||||||||||||
Sbjct: 60599 tgacccctccccctctctct 60618
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>gb|AC117224.3| Mus musculus BAC clone RP23-356N8 from chromosome 16, complete sequence
          Length = 197831

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 110   ccctccccctctctcttttt 129
             ||||||||||||||||||||
Sbjct: 76294 ccctccccctctctcttttt 76313
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>gb|AC124421.4| Mus musculus BAC clone RP24-323H7 from chromosome 10, complete sequence
          Length = 187081

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 109   cccctccccctctctctttt 128
             ||||||||||||||||||||
Sbjct: 88372 cccctccccctctctctttt 88391
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>gb|AC122511.5| Mus musculus BAC clone RP24-446A8 from chromosome 6, complete sequence
          Length = 157847

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 110   ccctccccctctctcttttt 129
             ||||||||||||||||||||
Sbjct: 62678 ccctccccctctctcttttt 62659
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>gb|AC127414.4| Mus musculus BAC clone RP23-246P24 from chromosome 7, complete sequence
          Length = 218222

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 110    ccctccccctctctcttttt 129
              ||||||||||||||||||||
Sbjct: 202371 ccctccccctctctcttttt 202390
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>emb|Z81552.1|CEF56G4 Caenorhabditis elegans Cosmid F56G4, complete sequence
          Length = 38062

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 125   ttttttagaaaaacatgaga 144
             ||||||||||||||||||||
Sbjct: 31807 ttttttagaaaaacatgaga 31788
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>gb|AC125487.3| Mus musculus BAC clone RP23-38L16 from 12, complete sequence
          Length = 222288

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 111   cctccccctctctctttttt 130
             ||||||||||||||||||||
Sbjct: 57972 cctccccctctctctttttt 57953
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>gb|AC114915.3| Mus musculus BAC clone RP23-54K21 from 2, complete sequence
          Length = 257013

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 108    acccctccccctctctcttt 127
              ||||||||||||||||||||
Sbjct: 165836 acccctccccctctctcttt 165855
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>gb|AC131723.1| Mus musculus BAC clone RP23-144E24 from 1, complete sequence
          Length = 200656

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 108    acccctccccctctctcttt 127
              ||||||||||||||||||||
Sbjct: 160952 acccctccccctctctcttt 160971
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>gb|AC122248.5| Mus musculus BAC clone RP23-156N18 from 7, complete sequence
          Length = 198901

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 110    ccctccccctctctcttttt 129
              ||||||||||||||||||||
Sbjct: 160743 ccctccccctctctcttttt 160724
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>gb|AC147428.6| Medicago truncatula clone mth2-34i10, complete sequence
          Length = 112873

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 118    ctctctcttttttagaaaaa 137
              ||||||||||||||||||||
Sbjct: 112727 ctctctcttttttagaaaaa 112708
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>gb|AC157596.5| Mus musculus BAC clone RP23-240B9 from chromosome 16, complete sequence
          Length = 204275

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 110   ccctccccctctctcttttt 129
             ||||||||||||||||||||
Sbjct: 42341 ccctccccctctctcttttt 42322
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>emb|AL445528.16| Human DNA sequence from clone RP11-419N10 on chromosome 1 Contains the
             APCS gene for serum amyloid P component, the OR10J6P locus
             for olfactory receptor family 10 subfamily J member 6
             pseudogene, a pentraxin-related C-reactive protein (CRP)
             pseudogene, the CRP gene for pentraxin-related C-reactive
             protein and a ribosomal protein L27 (RPL27) pseudogene,
             complete sequence
          Length = 195274

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 109   cccctccccctctctctttt 128
             ||||||||||||||||||||
Sbjct: 61665 cccctccccctctctctttt 61646
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>emb|AL159166.12| Human DNA sequence from clone RP3-527G5 on chromosome 6 Contains a
            putative novel gene, complete sequence
          Length = 72139

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 110  ccctccccctctctcttttt 129
            ||||||||||||||||||||
Sbjct: 2949 ccctccccctctctcttttt 2968
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>emb|AL139398.20| Human DNA sequence from clone RP11-528B10 on chromosome Xp11.21-11.23,
             complete sequence
          Length = 125999

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 96    ccatcaactatgacccctcc 115
             ||||||||||||||||||||
Sbjct: 75562 ccatcaactatgacccctcc 75543
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>gb|AC154487.2| Mus musculus BAC clone RP24-119I4 from chromosome 14, complete sequence
          Length = 199036

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 110   ccctccccctctctcttttt 129
             ||||||||||||||||||||
Sbjct: 97048 ccctccccctctctcttttt 97029
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>gb|AC153926.10| Mus musculus 10 BAC RP23-68M7 (Roswell Park Cancer Institute
            (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 191655

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 125  ttttttagaaaaacatgaga 144
            ||||||||||||||||||||
Sbjct: 9423 ttttttagaaaaacatgaga 9442
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>emb|AL596130.13| Mouse DNA sequence from clone RP23-209O5 on chromosome 11, complete
              sequence
          Length = 203000

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 109    cccctccccctctctctttt 128
              ||||||||||||||||||||
Sbjct: 177477 cccctccccctctctctttt 177458
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>emb|AL669951.18| Mouse DNA sequence from clone RP23-94F11 on chromosome 11 Contains three
              novel genes, a ribosomal protein L9 (Rpl9) pseudogene, a
              transcription elongation factor A (SII) 3 (Tcea3)
              pseudogene and the 3' end of the Fbxw1b gene for F-box and
              WD-40 domain protein 1B, complete sequence
          Length = 251085

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 109    cccctccccctctctctttt 128
              ||||||||||||||||||||
Sbjct: 232034 cccctccccctctctctttt 232015
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>gb|AC158604.5| Mus musculus 10 BAC RP23-130B2 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 190024

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 125    ttttttagaaaaacatgaga 144
              ||||||||||||||||||||
Sbjct: 128571 ttttttagaaaaacatgaga 128590
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>emb|AL954374.4| Mouse DNA sequence from clone RP23-445A5 on chromosome 2, complete
             sequence
          Length = 87941

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 109   cccctccccctctctctttt 128
             ||||||||||||||||||||
Sbjct: 73360 cccctccccctctctctttt 73341
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>gb|AC147892.2| Xenopus tropicalis clone CH216-35D21, complete sequence
          Length = 178580

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 114   ccccctctctcttttttagaaaaacatg 141
             ||||||||  ||||||||||||||||||
Sbjct: 30907 ccccctctggcttttttagaaaaacatg 30880
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>gb|AC153788.7| Mus musculus chromosome 1, clone RP24-282H12, complete sequence
          Length = 151799

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 112   ctccccctctctctttttta 131
             ||||||||||||||||||||
Sbjct: 41656 ctccccctctctctttttta 41637
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>gb|AC022479.3|AC022479 Homo sapiens BAC clone RP11-217F11 from 3, complete sequence
          Length = 156535

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 350    ggcagcttggtttattgtgtgggc 373
              |||||||||||||| |||||||||
Sbjct: 102738 ggcagcttggtttagtgtgtgggc 102761
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 119      tctctcttttttagaaaaac 138
                ||||||||||||||||||||
Sbjct: 12492095 tctctcttttttagaaaaac 12492114
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 108      acccctccccctctctcttt 127
                ||||||||||||||||||||
Sbjct: 15459801 acccctccccctctctcttt 15459782
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>gb|AC153136.3| Mus musculus BAC clone RP24-191P11 from chromosome 10, complete
            sequence
          Length = 199200

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 109  cccctccccctctctctttt 128
            ||||||||||||||||||||
Sbjct: 2424 cccctccccctctctctttt 2405
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>gb|AC148599.2| Xenopus tropicalis clone CH216-2G20, complete sequence
          Length = 206059

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 114   ccccctctctcttttttagaaaaacatg 141
             ||||||||  ||||||||||||||||||
Sbjct: 27612 ccccctctggcttttttagaaaaacatg 27639
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>gb|AC092988.6| Homo sapiens 3 BAC RP11-217F11 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 156528

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 350    ggcagcttggtttattgtgtgggc 373
              |||||||||||||| |||||||||
Sbjct: 102737 ggcagcttggtttagtgtgtgggc 102760
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>gb|AC156448.2| Volvox carteri clone JGIAOBO-33O24, complete sequence
          Length = 38975

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 108   acccctccccctctctcttt 127
             ||||||||||||||||||||
Sbjct: 20114 acccctccccctctctcttt 20095
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>dbj|AP005252.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBb0015I22
          Length = 121190

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 108   acccctccccctctctcttt 127
             ||||||||||||||||||||
Sbjct: 57865 acccctccccctctctcttt 57846
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>emb|CR626877.10| Zebrafish DNA sequence from clone DKEYP-114F9 in linkage group 19,
             complete sequence
          Length = 173824

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 235   ctaaaactttacatgacagc 254
             ||||||||||||||||||||
Sbjct: 27899 ctaaaactttacatgacagc 27918
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>emb|CT025759.14| Mouse DNA sequence from clone RP24-317H19 on chromosome 17, complete
              sequence
          Length = 171682

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 109    cccctccccctctctctttt 128
              ||||||||||||||||||||
Sbjct: 119948 cccctccccctctctctttt 119967
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>gb|AC164879.2| Mus musculus BAC clone RP23-354H10 from chromosome 14, complete sequence
          Length = 210602

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 109    cccctccccctctctctttt 128
              ||||||||||||||||||||
Sbjct: 128739 cccctccccctctctctttt 128758
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 119      tctctcttttttagaaaaac 138
                ||||||||||||||||||||
Sbjct: 12446465 tctctcttttttagaaaaac 12446484
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>emb|AL954826.3|CNS08CD2 Oryza sativa chromosome 12, . BAC OSJNBb0080P14 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 132241

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 119   tctctcttttttagaaaaac 138
             ||||||||||||||||||||
Sbjct: 93573 tctctcttttttagaaaaac 93592
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>gb|AC122293.3| Mus musculus BAC clone RP23-257O9 from 10, complete sequence
          Length = 209942

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 110   ccctccccctctctcttttttagaaaaa 137
             |||||||||||| ||| |||||||||||
Sbjct: 89794 ccctccccctctttctcttttagaaaaa 89767
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>emb|AL928690.9| Mouse DNA sequence from clone RP23-443L19 on chromosome 2, complete
             sequence
          Length = 98535

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 108   acccctccccctctctcttt 127
             ||||||||||||||||||||
Sbjct: 41560 acccctccccctctctcttt 41541
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>gb|AY780259.1| Eucalyptus globulus subsp. globulus chloroplast, complete genome
          Length = 160286

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 110   ccctccccctctctcttttttagaaaaa 137
             |||||||||||| | |||||||||||||
Sbjct: 71988 ccctccccctcttttttttttagaaaaa 72015
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>emb|AL596258.15| Mouse DNA sequence from clone RP23-226P4 on chromosome 11, complete
              sequence
          Length = 219037

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 110    ccctccccctctctcttttt 129
              ||||||||||||||||||||
Sbjct: 174974 ccctccccctctctcttttt 174955


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,350,900
Number of Sequences: 3902068
Number of extensions: 4350900
Number of successful extensions: 100860
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 100478
Number of HSP's gapped (non-prelim): 382
length of query: 472
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 450
effective length of database: 17,147,199,772
effective search space: 7716239897400
effective search space used: 7716239897400
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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