ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd25i23
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_464550.1| Oryza sativa (japonica cultivar-group), mRNA 103 7e-19
2dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 103 7e-19
3dbj|AP005915.3| Oryza sativa (japonica cultivar-group) genomic D... 103 7e-19
4dbj|AP005008.3| Oryza sativa (japonica cultivar-group) genomic D... 103 7e-19
5dbj|AK068982.1| Oryza sativa (japonica cultivar-group) cDNA clon... 103 7e-19
6gb|BT018096.1| Zea mays clone EL01N0552F12.c mRNA sequence 76 2e-10
7gb|AY110064.1| Zea mays CL27003_1 mRNA sequence 52 0.002
8gb|AC079613.7| Homo sapiens BAC clone RP11-325O22 from 2, comple... 44 0.58
9gb|AC116582.3| Mus musculus BAC clone RP23-340C13 from 9, comple... 42 2.3
10emb|AL671884.3| Human DNA sequence from clone RP13-44L19 on chro... 42 2.3
11ref|XM_792734.1| PREDICTED: Strongylocentrotus purpuratus simila... 42 2.3
12ref|XM_795658.1| PREDICTED: Strongylocentrotus purpuratus hypoth... 42 2.3
13ref|NM_077513.3| Caenorhabditis elegans Heavy chain, Unconventio... 42 2.3
14gb|AY109933.1| Zea mays CL27530_1 mRNA sequence 42 2.3
15dbj|AB038493.1| Mus musculus Zic1 gene, promoter region 42 2.3
16gb|AC104215.11| Mus musculus chromosome 7, clone RP23-44I18, com... 40 9.0
17ref|NM_177945.3| Bos taurus peroxisome proliferator activated re... 40 9.0
18gb|AC161374.6| Mus musculus BAC clone RP23-266O23 from chromosom... 40 9.0
19gb|AC132233.4| Mus musculus BAC clone RP24-490D10 from chromosom... 40 9.0
20ref|XM_859296.1| PREDICTED: Canis familiaris similar to peroxiso... 40 9.0
21ref|XM_859277.1| PREDICTED: Canis familiaris similar to peroxiso... 40 9.0
22ref|XM_846648.1| PREDICTED: Canis familiaris similar to peroxiso... 40 9.0
23ref|XM_859211.1| PREDICTED: Canis familiaris similar to peroxiso... 40 9.0
24gb|AC163638.2| Mus musculus BAC clone RP23-188H10 from chromosom... 40 9.0
25gb|AC146971.16| Medicago truncatula clone mth2-128d1, complete s... 40 9.0
26gb|AY346131.1|AY346131S1 Sus scrofa peoxisome proliferative acti... 40 9.0
27emb|AL589706.13| Human DNA sequence from clone RP11-522P6 on chr... 40 9.0
28ref|NM_008904.1| Mus musculus peroxisome proliferative activated... 40 9.0
29emb|CR388032.9| Zebrafish DNA sequence from clone DKEY-22L9 in l... 40 9.0
30gb|BC045684.1| Homo sapiens cDNA clone IMAGE:5300670 40 9.0
31emb|CR858502.1| Pongo pygmaeus mRNA; cDNA DKFZp468O039 (from clo... 40 9.0
32emb|BX470135.8| Zebrafish DNA sequence from clone RP71-15H20 in ... 40 9.0
33emb|BX511246.4| Zebrafish DNA sequence from clone DKEY-238D17 in... 40 9.0
34dbj|AB106108.1| Sus scrofa PPARGC-1 mRNA for peroxisome prolifer... 40 9.0
35dbj|AB106107.1| Bos taurus PPARGC-1 mRNA for peroxisome prolifer... 40 9.0
36dbj|AB061324.1| Mus musculus PGC-1v mRNA for PPAR gamma coactiva... 40 9.0
37dbj|AK138668.1| Mus musculus adult male spinal cord cDNA, RIKEN ... 40 9.0
38dbj|AK143753.1| Mus musculus 6 days neonate spleen cDNA, RIKEN f... 40 9.0
39gb|AY321517.1| Bos taurus peroxisome proliferator activated rece... 40 9.0
40dbj|AB169417.1| Macaca fascicularis testis cDNA, clone: QtsA-200... 40 9.0
41gb|AF408409.1|AF408409 Protobothrops mucrosquamatus acidic phosp... 40 9.0
42gb|AY237127.1| Rattus norvegicus PPAR gamma coactivator 1 mRNA, ... 40 9.0
43gb|AC131067.16| Mus musculus chromosome 1, clone RP23-383F8, com... 40 9.0
44ref|NM_213963.1| Sus scrofa peroxisome proliferator activated re... 40 9.0
45gb|AC087645.19| Homo sapiens chromosome 17, clone RP11-219G17, c... 40 9.0
46ref|NM_031347.1| Rattus norvegicus peroxisome proliferative acti... 40 9.0
47gb|AY484500.1|AY484494S7 Sus scrofa PPAR gamma coactivator 1 (PP... 40 9.0
48gb|AC116763.11| Mus musculus chromosome 5, clone RP23-385G21, co... 40 9.0
49gb|AF049330.1|AF049330 Mus musculus PPAR gamma coactivator (PGC-... 40 9.0
50emb|AL773601.11| Zebrafish DNA sequence from clone CH211-199O1, ... 40 9.0
51dbj|AB025784.1| Rattus norvegicus PGC1 mRNA for PPAR gamma coact... 40 9.0 
>ref|XM_464550.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1296

 Score =  103 bits (52), Expect = 7e-19
 Identities = 198/246 (80%), Gaps = 3/246 (1%)
 Strand = Plus / Minus

                                                                        
Query: 276  gggaggcaaggggggagcgatcctgcacaggtggtggggaccttgatcttgacccagaga 335
            |||| ||||| ||||||||||  || |  |||||||| |||||||||||||||||||| |
Sbjct: 1183 gggaagcaagtggggagcgattgtgtattggtggtggagaccttgatcttgacccagaca 1124

                                                                        
Query: 336  ggctcctgctcctggagagcgaccgtgcacgaccaccatgtgaacttggtttcccaccag 395
            ||||||||||||| || |  || || |  ||| ||||||| || ||| ||||||||||||
Sbjct: 1123 ggctcctgctccttgacattgaacgcgagcgatcaccatgcgaccttagtttcccaccag 1064

                                                                        
Query: 396  gaggcgaacgactacgtagtggactcctgctgtagccacctccccttgcacggtctcgat 455
             ||| || || || || |  ||||||||||||   |||||||||||| | | ||||||||
Sbjct: 1063 caggagagcggctgcgcacaggactcctgctgcgtccacctccccttcctctgtctcgat 1004

                                                                        
Query: 456  aagctggtgggctgcgtgacacacttcggctcctccttctgtacctgccaggccttggtg 515
            || |    || || ||||| |  |||||||||||||| |||||||||  |||||||||||
Sbjct: 1003 aaac---aggacttcgtgagatgcttcggctcctcctcctgtacctgttaggccttggtg 947

                  
Query: 516  atgctc 521
            ||||||
Sbjct: 946  atgctc 941



 Score =  101 bits (51), Expect = 3e-18
 Identities = 63/67 (94%)
 Strand = Plus / Minus

                                                                        
Query: 163  ctacttcccagcagaatcaggggagccatctccataggaaaccaaacccttcttcccttc 222
            |||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||
Sbjct: 1296 ctacttcccagcagaatcaggggaaccatctccatacgaaaccaaacctttcttcccttc 1237

                   
Query: 223  aggactg 229
            || ||||
Sbjct: 1236 agaactg 1230



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 63/74 (85%)
 Strand = Plus / Minus

                                                                       
Query: 587 ctgtcacggtcacctcttccaccatagcggtgagaacgatcaacagaaggtgaacgatac 646
           |||||||| ||||||||||||||||| |||   ||| |||||  ||||||||| || || 
Sbjct: 869 ctgtcacgatcacctcttccaccataacggaatgaatgatcaggagaaggtgagcggtat 810

                         
Query: 647 tgtcttgcaaatga 660
           ||||||||||||||
Sbjct: 809 tgtcttgcaaatga 796
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score =  103 bits (52), Expect = 7e-19
 Identities = 64/68 (94%)
 Strand = Plus / Minus

                                                                           
Query: 162     cctacttcccagcagaatcaggggagccatctccataggaaaccaaacccttcttccctt 221
               ||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||
Sbjct: 5834037 cctacttcccagcagaatcaggggaaccatctccatacgaaaccaaacctttcttccctt 5833978

                       
Query: 222     caggactg 229
               ||| ||||
Sbjct: 5833977 cagaactg 5833970



 Score = 83.8 bits (42), Expect = 7e-13
 Identities = 147/182 (80%)
 Strand = Plus / Minus

                                                                           
Query: 276     gggaggcaaggggggagcgatcctgcacaggtggtggggaccttgatcttgacccagaga 335
               |||| ||||| ||||||||||  || |  |||||||| |||||||||||||||||||| |
Sbjct: 5833923 gggaagcaagtggggagcgattgtgtattggtggtggagaccttgatcttgacccagaca 5833864

                                                                           
Query: 336     ggctcctgctcctggagagcgaccgtgcacgaccaccatgtgaacttggtttcccaccag 395
               ||||||||||||| || |  || || |  ||| ||||||| || ||| ||||||||||||
Sbjct: 5833863 ggctcctgctccttgacattgaacgcgagcgatcaccatgcgaccttagtttcccaccag 5833804

                                                                           
Query: 396     gaggcgaacgactacgtagtggactcctgctgtagccacctccccttgcacggtctcgat 455
                ||| || || || || |  ||||||||||||   |||||||||||| | | ||||||||
Sbjct: 5833803 caggagagcggctgcgcacaggactcctgctgcgtccacctccccttcctctgtctcgat 5833744

                 
Query: 456     aa 457
               ||
Sbjct: 5833743 aa 5833742



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 66/77 (85%)
 Strand = Plus / Minus

                                                                           
Query: 584     tacctgtcacggtcacctcttccaccatagcggtgagaacgatcaacagaaggtgaacga 643
               ||||||||||| ||||||||||||||||| |||   ||| |||||  ||||||||| || 
Sbjct: 5833342 tacctgtcacgatcacctcttccaccataacggaatgaatgatcaggagaaggtgagcgg 5833283

                                
Query: 644     tactgtcttgcaaatga 660
               || ||||||||||||||
Sbjct: 5833282 tattgtcttgcaaatga 5833266
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>dbj|AP005915.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBb0056C19
          Length = 147739

 Score =  103 bits (52), Expect = 7e-19
 Identities = 64/68 (94%)
 Strand = Plus / Minus

                                                                         
Query: 162   cctacttcccagcagaatcaggggagccatctccataggaaaccaaacccttcttccctt 221
             ||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||
Sbjct: 12258 cctacttcccagcagaatcaggggaaccatctccatacgaaaccaaacctttcttccctt 12199

                     
Query: 222   caggactg 229
             ||| ||||
Sbjct: 12198 cagaactg 12191



 Score = 83.8 bits (42), Expect = 7e-13
 Identities = 147/182 (80%)
 Strand = Plus / Minus

                                                                         
Query: 276   gggaggcaaggggggagcgatcctgcacaggtggtggggaccttgatcttgacccagaga 335
             |||| ||||| ||||||||||  || |  |||||||| |||||||||||||||||||| |
Sbjct: 12144 gggaagcaagtggggagcgattgtgtattggtggtggagaccttgatcttgacccagaca 12085

                                                                         
Query: 336   ggctcctgctcctggagagcgaccgtgcacgaccaccatgtgaacttggtttcccaccag 395
             ||||||||||||| || |  || || |  ||| ||||||| || ||| ||||||||||||
Sbjct: 12084 ggctcctgctccttgacattgaacgcgagcgatcaccatgcgaccttagtttcccaccag 12025

                                                                         
Query: 396   gaggcgaacgactacgtagtggactcctgctgtagccacctccccttgcacggtctcgat 455
              ||| || || || || |  ||||||||||||   |||||||||||| | | ||||||||
Sbjct: 12024 caggagagcggctgcgcacaggactcctgctgcgtccacctccccttcctctgtctcgat 11965

               
Query: 456   aa 457
             ||
Sbjct: 11964 aa 11963



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 66/77 (85%)
 Strand = Plus / Minus

                                                                         
Query: 584   tacctgtcacggtcacctcttccaccatagcggtgagaacgatcaacagaaggtgaacga 643
             ||||||||||| ||||||||||||||||| |||   ||| |||||  ||||||||| || 
Sbjct: 11563 tacctgtcacgatcacctcttccaccataacggaatgaatgatcaggagaaggtgagcgg 11504

                              
Query: 644   tactgtcttgcaaatga 660
             || ||||||||||||||
Sbjct: 11503 tattgtcttgcaaatga 11487
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>dbj|AP005008.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0544H11
          Length = 178376

 Score =  103 bits (52), Expect = 7e-19
 Identities = 64/68 (94%)
 Strand = Plus / Minus

                                                                         
Query: 162   cctacttcccagcagaatcaggggagccatctccataggaaaccaaacccttcttccctt 221
             ||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||
Sbjct: 63839 cctacttcccagcagaatcaggggaaccatctccatacgaaaccaaacctttcttccctt 63780

                     
Query: 222   caggactg 229
             ||| ||||
Sbjct: 63779 cagaactg 63772



 Score = 83.8 bits (42), Expect = 7e-13
 Identities = 147/182 (80%)
 Strand = Plus / Minus

                                                                         
Query: 276   gggaggcaaggggggagcgatcctgcacaggtggtggggaccttgatcttgacccagaga 335
             |||| ||||| ||||||||||  || |  |||||||| |||||||||||||||||||| |
Sbjct: 63725 gggaagcaagtggggagcgattgtgtattggtggtggagaccttgatcttgacccagaca 63666

                                                                         
Query: 336   ggctcctgctcctggagagcgaccgtgcacgaccaccatgtgaacttggtttcccaccag 395
             ||||||||||||| || |  || || |  ||| ||||||| || ||| ||||||||||||
Sbjct: 63665 ggctcctgctccttgacattgaacgcgagcgatcaccatgcgaccttagtttcccaccag 63606

                                                                         
Query: 396   gaggcgaacgactacgtagtggactcctgctgtagccacctccccttgcacggtctcgat 455
              ||| || || || || |  ||||||||||||   |||||||||||| | | ||||||||
Sbjct: 63605 caggagagcggctgcgcacaggactcctgctgcgtccacctccccttcctctgtctcgat 63546

               
Query: 456   aa 457
             ||
Sbjct: 63545 aa 63544



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 66/77 (85%)
 Strand = Plus / Minus

                                                                         
Query: 584   tacctgtcacggtcacctcttccaccatagcggtgagaacgatcaacagaaggtgaacga 643
             ||||||||||| ||||||||||||||||| |||   ||| |||||  ||||||||| || 
Sbjct: 63144 tacctgtcacgatcacctcttccaccataacggaatgaatgatcaggagaaggtgagcgg 63085

                              
Query: 644   tactgtcttgcaaatga 660
             || ||||||||||||||
Sbjct: 63084 tattgtcttgcaaatga 63068
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>dbj|AK068982.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002I11, full
            insert sequence
          Length = 1454

 Score =  103 bits (52), Expect = 7e-19
 Identities = 64/68 (94%)
 Strand = Plus / Minus

                                                                        
Query: 162  cctacttcccagcagaatcaggggagccatctccataggaaaccaaacccttcttccctt 221
            ||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||
Sbjct: 1117 cctacttcccagcagaatcaggggaaccatctccatacgaaaccaaacctttcttccctt 1058

                    
Query: 222  caggactg 229
            ||| ||||
Sbjct: 1057 cagaactg 1050



 Score =  103 bits (52), Expect = 7e-19
 Identities = 198/246 (80%), Gaps = 3/246 (1%)
 Strand = Plus / Minus

                                                                        
Query: 276  gggaggcaaggggggagcgatcctgcacaggtggtggggaccttgatcttgacccagaga 335
            |||| ||||| ||||||||||  || |  |||||||| |||||||||||||||||||| |
Sbjct: 1003 gggaagcaagtggggagcgattgtgtattggtggtggagaccttgatcttgacccagaca 944

                                                                        
Query: 336  ggctcctgctcctggagagcgaccgtgcacgaccaccatgtgaacttggtttcccaccag 395
            ||||||||||||| || |  || || |  ||| ||||||| || ||| ||||||||||||
Sbjct: 943  ggctcctgctccttgacattgaacgcgagcgatcaccatgcgaccttagtttcccaccag 884

                                                                        
Query: 396  gaggcgaacgactacgtagtggactcctgctgtagccacctccccttgcacggtctcgat 455
             ||| || || || || |  ||||||||||||   |||||||||||| | | ||||||||
Sbjct: 883  caggagagcggctgcgcacaggactcctgctgcgtccacctccccttcctctgtctcgat 824

                                                                        
Query: 456  aagctggtgggctgcgtgacacacttcggctcctccttctgtacctgccaggccttggtg 515
            || |    || || ||||| |  |||||||||||||| |||||||||  |||||||||||
Sbjct: 823  aaac---aggacttcgtgagatgcttcggctcctcctcctgtacctgttaggccttggtg 767

                  
Query: 516  atgctc 521
            ||||||
Sbjct: 766  atgctc 761



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 63/74 (85%)
 Strand = Plus / Minus

                                                                       
Query: 587 ctgtcacggtcacctcttccaccatagcggtgagaacgatcaacagaaggtgaacgatac 646
           |||||||| ||||||||||||||||| |||   ||| |||||  ||||||||| || || 
Sbjct: 689 ctgtcacgatcacctcttccaccataacggaatgaatgatcaggagaaggtgagcggtat 630

                         
Query: 647 tgtcttgcaaatga 660
           ||||||||||||||
Sbjct: 629 tgtcttgcaaatga 616
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>gb|BT018096.1| Zea mays clone EL01N0552F12.c mRNA sequence
          Length = 1257

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 160/198 (80%), Gaps = 7/198 (3%)
 Strand = Plus / Minus

                                                                       
Query: 464 gggctgcgtgacacacttcggctcctccttctgtacctgccaggccttggtgatg---ct 520
           |||||||||||  | |||||||||||||| |||||||| ||| ||||||| ||||   ||
Sbjct: 652 gggctgcgtgaggcgcttcggctcctcctcctgtacctaccacgccttggcgatgacact 593

                                                                       
Query: 521 cttctt---ggtgggcttctgtatcgtcttggaggtgatcgataa-cgagtgccccggtg 576
           |||| |   || |||||||| || ||||| |||||||||||||   || |  ||||||| 
Sbjct: 592 cttcctctgggggggcttctataccgtctaggaggtgatcgatgggcgggaaccccggta 533

                                                                       
Query: 577 actgatatacctgtcacggtcacctcttccaccatagcggtgagaacgatcaacagaagg 636
           ||  || || ||||||||||||  |||||||||||| || || || |||||| |||||||
Sbjct: 532 acccatgtatctgtcacggtcatttcttccaccataacgatgtgagcgatcagcagaagg 473

                             
Query: 637 tgaacgatactgtcttgc 654
           ||| ||||| ||||||||
Sbjct: 472 tgagcgatattgtcttgc 455



 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 50/55 (90%)
 Strand = Plus / Minus

                                                                  
Query: 162 cctacttcccagcagaatcaggggagccatctccataggaaaccaaacccttctt 216
           ||||||||||||| |||||||| |||||||| || |||||||||||||| |||||
Sbjct: 970 cctacttcccagctgaatcaggtgagccatccccgtaggaaaccaaacctttctt 916



 Score = 44.1 bits (22), Expect = 0.58
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 356 gaccgtgcacgaccaccatgtgaacttggtttcc 389
           |||||||||||  |||||||||| ||||||||||
Sbjct: 758 gaccgtgcacggtcaccatgtgaccttggtttcc 725
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>gb|AY110064.1| Zea mays CL27003_1 mRNA sequence
          Length = 1010

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 62/74 (83%)
 Strand = Plus / Minus

                                                                       
Query: 587 ctgtcacggtcacctcttccaccatagcggtgagaacgatcaacagaaggtgaacgatac 646
           ||||||||||||  |||||| ||||| || ||  | |||||| | |||||||| ||||| 
Sbjct: 550 ctgtcacggtcatttcttccgccataacgatgcaagcgatcagcggaaggtgagcgatat 491

                         
Query: 647 tgtcttgcaaatga 660
           ||||||||||||||
Sbjct: 490 tgtcttgcaaatga 477



 Score = 44.1 bits (22), Expect = 0.58
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 356 gaccgtgcacgaccaccatgtgaacttggtttcc 389
           |||||||||||  |||||||||| ||||||||||
Sbjct: 775 gaccgtgcacggtcaccatgtgaccttggtttcc 742



 Score = 44.1 bits (22), Expect = 0.58
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 464 gggctgcgtgacacacttcggctcctccttctgtacct 501
           |||||||||||  | |||||||||||||| ||||||||
Sbjct: 670 gggctgcgtgaggcgcttcggctcctcctcctgtacct 633



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                
Query: 164 tacttcccagcagaatcaggggagccatctccataggaaaccaaacccttctt 216
           ||||||||||  ||||||||  ||||||| || ||||||||||| || |||||
Sbjct: 985 tacttcccagttgaatcaggtaagccatccccgtaggaaaccaaccctttctt 933
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>gb|AC079613.7| Homo sapiens BAC clone RP11-325O22 from 2, complete sequence
          Length = 164548

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 60   taattcaaccaaattcaaaatt 81
            ||||||||||||||||||||||
Sbjct: 8036 taattcaaccaaattcaaaatt 8057
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>gb|AC116582.3| Mus musculus BAC clone RP23-340C13 from 9, complete sequence
          Length = 214625

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 272    gatggggaggcaaggggggag 292
              |||||||||||||||||||||
Sbjct: 127769 gatggggaggcaaggggggag 127749
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>emb|AL671884.3| Human DNA sequence from clone RP13-44L19 on chromosome 6 Contains the
              gene for mandaselin (FLJ12838) and a CpG island, complete
              sequence
          Length = 105273

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 103    attttaacagagcggaaaaac 123
              |||||||||||||||||||||
Sbjct: 100278 attttaacagagcggaaaaac 100258
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>ref|XM_792734.1| PREDICTED: Strongylocentrotus purpuratus similar to
           retinoblastoma-associated factor 600 (LOC593249),
           partial mRNA
          Length = 450

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 334 gaggctcctgctcctggagag 354
           |||||||||||||||||||||
Sbjct: 144 gaggctcctgctcctggagag 164
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>ref|XM_795658.1| PREDICTED: Strongylocentrotus purpuratus hypothetical protein
           LOC593253 (LOC593253), mRNA
          Length = 534

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 620 gaacgatcaacagaaggtgaacgat 644
           ||||||| |||||||||||||||||
Sbjct: 216 gaacgatgaacagaaggtgaacgat 240
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>ref|NM_077513.3| Caenorhabditis elegans Heavy chain, Unconventional Myosin family
            member (hum-4) (hum-4) mRNA, complete cds
          Length = 8759

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 639  aacgatactgtcttgcaaatg 659
            |||||||||||||||||||||
Sbjct: 2647 aacgatactgtcttgcaaatg 2627
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>gb|AY109933.1| Zea mays CL27530_1 mRNA sequence
          Length = 667

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                    
Query: 176 gaatcaggggagccatctccataggaaaccaaacccttctt 216
           |||||||| | |||||| || |||||||||||||| |||||
Sbjct: 363 gaatcaggagtgccatcaccgtaggaaaccaaacctttctt 403
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>dbj|AB038493.1| Mus musculus Zic1 gene, promoter region
          Length = 2280

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 272  gatggggaggcaaggggggag 292
            |||||||||||||||||||||
Sbjct: 1352 gatggggaggcaaggggggag 1372
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>gb|AC104215.11| Mus musculus chromosome 7, clone RP23-44I18, complete sequence
          Length = 235147

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 506    ggccttggtgatgctcttct 525
              ||||||||||||||||||||
Sbjct: 183664 ggccttggtgatgctcttct 183683
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>ref|NM_177945.3| Bos taurus peroxisome proliferator activated receptor gamma
            coactivator 1 alpha (PPARGC1A), mRNA
          Length = 6324

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 310  tggggaccttgatcttgacc 329
            ||||||||||||||||||||
Sbjct: 1860 tggggaccttgatcttgacc 1841
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>gb|AC161374.6| Mus musculus BAC clone RP23-266O23 from chromosome 14, complete
            sequence
          Length = 202929

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 425  ctgtagccacctccccttgc 444
            ||||||||||||||||||||
Sbjct: 7486 ctgtagccacctccccttgc 7467
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>gb|AC132233.4| Mus musculus BAC clone RP24-490D10 from chromosome 5, complete sequence
          Length = 160438

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 493    tctgtacctgccaggccttggtga 516
              ||||| ||||||||||||||||||
Sbjct: 111518 tctgtgcctgccaggccttggtga 111541
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>ref|XM_859296.1| PREDICTED: Canis familiaris similar to peroxisome proliferative
            activated receptor, gamma, coactivator 1 alpha,
            transcript variant 5 (LOC479127), mRNA
          Length = 2550

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 310  tggggaccttgatcttgacc 329
            ||||||||||||||||||||
Sbjct: 1796 tggggaccttgatcttgacc 1777
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>ref|XM_859277.1| PREDICTED: Canis familiaris similar to peroxisome proliferative
            activated receptor, gamma, coactivator 1 alpha,
            transcript variant 4 (LOC479127), mRNA
          Length = 1389

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 310  tggggaccttgatcttgacc 329
            ||||||||||||||||||||
Sbjct: 1000 tggggaccttgatcttgacc 981
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>ref|XM_846648.1| PREDICTED: Canis familiaris similar to peroxisome proliferative
            activated receptor, gamma, coactivator 1 alpha,
            transcript variant 1 (LOC479127), mRNA
          Length = 2604

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 310  tggggaccttgatcttgacc 329
            ||||||||||||||||||||
Sbjct: 1850 tggggaccttgatcttgacc 1831
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>ref|XM_859211.1| PREDICTED: Canis familiaris similar to peroxisome proliferative
           activated receptor, gamma, coactivator 1 alpha,
           transcript variant 2 (LOC479127), mRNA
          Length = 713

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 310 tggggaccttgatcttgacc 329
           ||||||||||||||||||||
Sbjct: 309 tggggaccttgatcttgacc 290
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>gb|AC163638.2| Mus musculus BAC clone RP23-188H10 from chromosome 14, complete sequence
          Length = 203950

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 425    ctgtagccacctccccttgc 444
              ||||||||||||||||||||
Sbjct: 104989 ctgtagccacctccccttgc 105008
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>gb|AC146971.16| Medicago truncatula clone mth2-128d1, complete sequence
          Length = 125569

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 200    gaaaccaaacccttcttccc 219
              ||||||||||||||||||||
Sbjct: 118514 gaaaccaaacccttcttccc 118495
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>gb|AY346131.1|AY346131S1 Sus scrofa peoxisome proliferative activated receptor gamma
            coactivator 1 (PPARGC1) mRNA, complete cds
          Length = 2769

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 310  tggggaccttgatcttgacc 329
            ||||||||||||||||||||
Sbjct: 1857 tggggaccttgatcttgacc 1838
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>emb|AL589706.13| Human DNA sequence from clone RP11-522P6 on chromosome X, complete
             sequence
          Length = 119907

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 59    ataattcaaccaaattcaaa 78
             ||||||||||||||||||||
Sbjct: 50712 ataattcaaccaaattcaaa 50731
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>ref|NM_008904.1| Mus musculus peroxisome proliferative activated receptor, gamma,
            coactivator 1 alpha (Ppargc1a), mRNA
          Length = 3029

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 310  tggggaccttgatcttgacc 329
            ||||||||||||||||||||
Sbjct: 1861 tggggaccttgatcttgacc 1842
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>emb|CR388032.9| Zebrafish DNA sequence from clone DKEY-22L9 in linkage group 23, complete
              sequence
          Length = 271754

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 100    aacattttaacagagcggaa 119
              ||||||||||||||||||||
Sbjct: 255196 aacattttaacagagcggaa 255215
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>gb|BC045684.1| Homo sapiens cDNA clone IMAGE:5300670
          Length = 2883

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 159 ccccctacttcccagcagaa 178
           ||||||||||||||||||||
Sbjct: 940 ccccctacttcccagcagaa 959
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>emb|CR858502.1| Pongo pygmaeus mRNA; cDNA DKFZp468O039 (from clone DKFZp468O039)
          Length = 2715

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 310  tggggaccttgatcttgacc 329
            ||||||||||||||||||||
Sbjct: 1863 tggggaccttgatcttgacc 1844
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>emb|BX470135.8| Zebrafish DNA sequence from clone RP71-15H20 in linkage group 8, complete
              sequence
          Length = 147292

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 61     aattcaaccaaattcaaaat 80
              ||||||||||||||||||||
Sbjct: 136346 aattcaaccaaattcaaaat 136327
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>emb|BX511246.4| Zebrafish DNA sequence from clone DKEY-238D17 in linkage group 23,
             complete sequence
          Length = 84484

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 100   aacattttaacagagcggaa 119
             ||||||||||||||||||||
Sbjct: 16711 aacattttaacagagcggaa 16692
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>dbj|AB106108.1| Sus scrofa PPARGC-1 mRNA for peroxisome proliferator activated
            receptor,gamma,coactivator 1, complete cds
          Length = 2497

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 310  tggggaccttgatcttgacc 329
            ||||||||||||||||||||
Sbjct: 1799 tggggaccttgatcttgacc 1780
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>dbj|AB106107.1| Bos taurus PPARGC-1 mRNA for peroxisome proliferator activated
            receptor,gamma,coactivator 1, complete cds
          Length = 2497

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 310  tggggaccttgatcttgacc 329
            ||||||||||||||||||||
Sbjct: 1802 tggggaccttgatcttgacc 1783
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>dbj|AB061324.1| Mus musculus PGC-1v mRNA for PPAR gamma coactivator variant form,
            complete cds
          Length = 2685

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 310  tggggaccttgatcttgacc 329
            ||||||||||||||||||||
Sbjct: 1863 tggggaccttgatcttgacc 1844
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>dbj|AK138668.1| Mus musculus adult male spinal cord cDNA, RIKEN full-length enriched
            library, clone:A330098E04 product:peroxisome
            proliferative activated receptor, gamma, coactivator 1
            alpha, full insert sequence
          Length = 2651

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 310  tggggaccttgatcttgacc 329
            ||||||||||||||||||||
Sbjct: 1910 tggggaccttgatcttgacc 1891
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>dbj|AK143753.1| Mus musculus 6 days neonate spleen cDNA, RIKEN full-length enriched
            library, clone:F430102H07 product:peroxisome
            proliferative activated receptor, gamma, coactivator 1
            alpha, full insert sequence
          Length = 2602

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 310  tggggaccttgatcttgacc 329
            ||||||||||||||||||||
Sbjct: 1861 tggggaccttgatcttgacc 1842
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>gb|AY321517.1| Bos taurus peroxisome proliferator activated receptor gamma
            coactivator 1 alpha (PPARGC1A) mRNA, complete cds
          Length = 6324

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 310  tggggaccttgatcttgacc 329
            ||||||||||||||||||||
Sbjct: 1860 tggggaccttgatcttgacc 1841
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>dbj|AB169417.1| Macaca fascicularis testis cDNA, clone: QtsA-20042, similar to human
            peroxisome proliferative activated receptor,
            gamma,coactivator 1, alpha (PPARGC1A), mRNA, RefSeq:
            NM_013261.2
          Length = 2822

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 310  tggggaccttgatcttgacc 329
            ||||||||||||||||||||
Sbjct: 1809 tggggaccttgatcttgacc 1790
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>gb|AF408409.1|AF408409 Protobothrops mucrosquamatus acidic phospholipase A2 mRNA, complete
           cds
          Length = 776

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 482 cggctcctccttctgtacct 501
           ||||||||||||||||||||
Sbjct: 66  cggctcctccttctgtacct 85
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>gb|AY237127.1| Rattus norvegicus PPAR gamma coactivator 1 mRNA, complete cds
          Length = 2391

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 310  tggggaccttgatcttgacc 329
            ||||||||||||||||||||
Sbjct: 1767 tggggaccttgatcttgacc 1748
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>gb|AC131067.16| Mus musculus chromosome 1, clone RP23-383F8, complete sequence
          Length = 201908

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 201    aaaccaaacccttcttccct 220
              ||||||||||||||||||||
Sbjct: 159317 aaaccaaacccttcttccct 159298
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>ref|NM_213963.1| Sus scrofa peroxisome proliferator activated
            receptor,gamma,coactivator 1 (PPARGC-1), mRNA
          Length = 2769

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 310  tggggaccttgatcttgacc 329
            ||||||||||||||||||||
Sbjct: 1857 tggggaccttgatcttgacc 1838
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>gb|AC087645.19| Homo sapiens chromosome 17, clone RP11-219G17, complete sequence
          Length = 209751

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 159   ccccctacttcccagcagaa 178
             ||||||||||||||||||||
Sbjct: 85243 ccccctacttcccagcagaa 85262
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>ref|NM_031347.1| Rattus norvegicus peroxisome proliferative activated receptor, gamma,
            coactivator 1 alpha (Ppargc1a), mRNA
          Length = 2440

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 310  tggggaccttgatcttgacc 329
            ||||||||||||||||||||
Sbjct: 1808 tggggaccttgatcttgacc 1789
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>gb|AY484500.1|AY484494S7 Sus scrofa PPAR gamma coactivator 1 (PPARGC1) gene, exons 8 through
            10 and partial cds
          Length = 2098

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 310  tggggaccttgatcttgacc 329
            ||||||||||||||||||||
Sbjct: 1157 tggggaccttgatcttgacc 1138
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>gb|AC116763.11| Mus musculus chromosome 5, clone RP23-385G21, complete sequence
          Length = 196521

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 310   tggggaccttgatcttgacc 329
             ||||||||||||||||||||
Sbjct: 96809 tggggaccttgatcttgacc 96790
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>gb|AF049330.1|AF049330 Mus musculus PPAR gamma coactivator (PGC-1) mRNA, complete cds
          Length = 3029

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 310  tggggaccttgatcttgacc 329
            ||||||||||||||||||||
Sbjct: 1861 tggggaccttgatcttgacc 1842
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>emb|AL773601.11| Zebrafish DNA sequence from clone CH211-199O1, complete sequence
          Length = 201299

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 61     aattcaaccaaattcaaaat 80
              ||||||||||||||||||||
Sbjct: 148728 aattcaaccaaattcaaaat 148709
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>dbj|AB025784.1| Rattus norvegicus PGC1 mRNA for PPAR gamma coactivator, complete cds
          Length = 2440

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 310  tggggaccttgatcttgacc 329
            ||||||||||||||||||||
Sbjct: 1808 tggggaccttgatcttgacc 1789


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,525,974
Number of Sequences: 3902068
Number of extensions: 5525974
Number of successful extensions: 108669
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 108523
Number of HSP's gapped (non-prelim): 141
length of query: 660
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 637
effective length of database: 17,143,297,704
effective search space: 10920280637448
effective search space used: 10920280637448
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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