Clone Name | rbasd25i18 |
---|---|
Clone Library Name | barley_pub |
>gb|AY108805.1| Zea mays PCO077883 mRNA sequence Length = 2049 Score = 266 bits (134), Expect = 7e-68 Identities = 322/382 (84%), Gaps = 2/382 (0%) Strand = Plus / Minus Query: 141 cgccggggttgggagctccggcagtccgctctcgccattcagcacaatgactttcccctc 200 |||||| |||| ||||||||| | |||| || ||||| ||||||| || |||||||| Sbjct: 1893 cgccggagttgagagctccggtatgccgccctgaccattgagcacaacaaccttcccctc 1834 Query: 201 cgagtccacatcaacaatcacagagtcgccctccttgacctccccgcccaaaatcttctc 260 |||||||||||| || || |||||||||||||||| |||||||| | | |||||||| Sbjct: 1833 cgagtccacatctactatggcagagtcgccctcctttacctcccctgcgagcatcttctc 1774 Query: 261 cgcgaggctgtcctccagaagcctcatgatcgccctcctcaatggccgcgctccgtagct 320 || |||||||||||||| ||||||||||| || | ||||| || || || || ||||| Sbjct: 1773 agcaaggctgtcctccagcagcctcatgatggctcgcctcagcgggcgtgcaccatagct 1714 Query: 321 agggttgtacccttcgtccacgacccgctccttgaacttctccgtcacctgcaggttgat 380 ||||||||| ||||||||||| |||||||||||||||||||| ||||| || || ||||| Sbjct: 1713 agggttgtagccttcgtccaccacccgctccttgaacttctcggtcacttgaagattgat 1654 Query: 381 gtccttgctcttcagcctagtgaaa-acctcctgcagcattatgttcgcgatctctttga 439 ||||||| ||||||||| || ||| |||||||| ||||| |||| ||| ||||| |||| Sbjct: 1653 gtccttggccttcagcct-gtcaaagacctcctggagcatgatgtccgctatctccttga 1595 Query: 440 cttccagcttggtcagctgtctgaagacgatcatttcgtcgagacggttgagaaactccg 499 | || |||||||| ||||| ||||| |||||||| || |||||||||||||| ||||| | Sbjct: 1594 cctcgagcttggtaagctgcctgaacacgatcatctcatcgagacggttgaggaactcag 1535 Query: 500 gtcggaagtactgcttcatctc 521 ||||||| |||||||||||||| Sbjct: 1534 gtcggaaatactgcttcatctc 1513
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 232 bits (117), Expect = 9e-58 Identities = 293/349 (83%), Gaps = 2/349 (0%) Strand = Plus / Plus Query: 174 gccattcagcacaatgactttcccctccgagtccacatcaacaatcacagagtcgccctc 233 ||||||||| ||||| || |||||||| || |||||||| ||||| |||| || ||||| Sbjct: 7095126 gccattcagtacaatcaccttcccctcggaatccacatcgacaatggcagaatcaccctc 7095185 Query: 234 cttgacctccccgcccaaaatcttctccgcgaggctgtcctccagaagcctcatgatcgc 293 ||| |||||||| | | |||||||||||||||||||||||||| ||||||||||| || Sbjct: 7095186 cttcacctccccagctagcatcttctccgcgaggctgtcctccaggagcctcatgatggc 7095245 Query: 294 cctcctcaatggccgcgctccgtagctagggttgtacccttcgtccacgacccgctcctt 353 |||||| | |||| ||| || ||||| |||||| | |||||||| |||| |||||||| Sbjct: 7095246 cctccttagcggcctcgcaccatagctcgggttgaagccttcgtcaacgatacgctcctt 7095305 Query: 354 gaacttctccgtcacctgcaggttgatgtccttgctcttcagcctagtgaaa-acctcct 412 ||||||||| || ||||| |||| ||||||||| ||| ||||| || ||| ||||||| Sbjct: 7095306 gaacttctcggtgacctggaggtcaatgtccttggccttgagcct-gtcaaagacctcct 7095364 Query: 413 gcagcattatgttcgcgatctctttgacttccagcttggtcagctgtctgaagacgatca 472 ||||| || | |||||||| ||||| ||||||||||| || || ||||||||||||| Sbjct: 7095365 tgagcatgatctcggcgatctccttgacctccagcttggtgagttgcctgaagacgatca 7095424 Query: 473 tttcgtcgagacggttgagaaactccggtcggaagtactgcttcatctc 521 | ||||||||||||||||| ||||| || |||||||||||||||||||| Sbjct: 7095425 tctcgtcgagacggttgaggaactcggggcggaagtactgcttcatctc 7095473
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 232 bits (117), Expect = 9e-58 Identities = 293/349 (83%), Gaps = 2/349 (0%) Strand = Plus / Plus Query: 174 gccattcagcacaatgactttcccctccgagtccacatcaacaatcacagagtcgccctc 233 ||||||||| ||||| || |||||||| || |||||||| ||||| |||| || ||||| Sbjct: 7095005 gccattcagtacaatcaccttcccctcggaatccacatcgacaatggcagaatcaccctc 7095064 Query: 234 cttgacctccccgcccaaaatcttctccgcgaggctgtcctccagaagcctcatgatcgc 293 ||| |||||||| | | |||||||||||||||||||||||||| ||||||||||| || Sbjct: 7095065 cttcacctccccagctagcatcttctccgcgaggctgtcctccaggagcctcatgatggc 7095124 Query: 294 cctcctcaatggccgcgctccgtagctagggttgtacccttcgtccacgacccgctcctt 353 |||||| | |||| ||| || ||||| |||||| | |||||||| |||| |||||||| Sbjct: 7095125 cctccttagcggcctcgcaccatagctcgggttgaagccttcgtcaacgatacgctcctt 7095184 Query: 354 gaacttctccgtcacctgcaggttgatgtccttgctcttcagcctagtgaaa-acctcct 412 ||||||||| || ||||| |||| ||||||||| ||| ||||| || ||| ||||||| Sbjct: 7095185 gaacttctcggtgacctggaggtcaatgtccttggccttgagcct-gtcaaagacctcct 7095243 Query: 413 gcagcattatgttcgcgatctctttgacttccagcttggtcagctgtctgaagacgatca 472 ||||| || | |||||||| ||||| ||||||||||| || || ||||||||||||| Sbjct: 7095244 tgagcatgatctcggcgatctccttgacctccagcttggtgagttgcctgaagacgatca 7095303 Query: 473 tttcgtcgagacggttgagaaactccggtcggaagtactgcttcatctc 521 | ||||||||||||||||| ||||| || |||||||||||||||||||| Sbjct: 7095304 tctcgtcgagacggttgaggaactcggggcggaagtactgcttcatctc 7095352
>emb|AL928782.4|CNS08CCC Oryza sativa chromosome 12, . BAC OSJNBb0069I24 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 68450 Score = 232 bits (117), Expect = 9e-58 Identities = 293/349 (83%), Gaps = 2/349 (0%) Strand = Plus / Plus Query: 174 gccattcagcacaatgactttcccctccgagtccacatcaacaatcacagagtcgccctc 233 ||||||||| ||||| || |||||||| || |||||||| ||||| |||| || ||||| Sbjct: 62812 gccattcagtacaatcaccttcccctcggaatccacatcgacaatggcagaatcaccctc 62871 Query: 234 cttgacctccccgcccaaaatcttctccgcgaggctgtcctccagaagcctcatgatcgc 293 ||| |||||||| | | |||||||||||||||||||||||||| ||||||||||| || Sbjct: 62872 cttcacctccccagctagcatcttctccgcgaggctgtcctccaggagcctcatgatggc 62931 Query: 294 cctcctcaatggccgcgctccgtagctagggttgtacccttcgtccacgacccgctcctt 353 |||||| | |||| ||| || ||||| |||||| | |||||||| |||| |||||||| Sbjct: 62932 cctccttagcggcctcgcaccatagctcgggttgaagccttcgtcaacgatacgctcctt 62991 Query: 354 gaacttctccgtcacctgcaggttgatgtccttgctcttcagcctagtgaaa-acctcct 412 ||||||||| || ||||| |||| ||||||||| ||| ||||| || ||| ||||||| Sbjct: 62992 gaacttctcggtgacctggaggtcaatgtccttggccttgagcct-gtcaaagacctcct 63050 Query: 413 gcagcattatgttcgcgatctctttgacttccagcttggtcagctgtctgaagacgatca 472 ||||| || | |||||||| ||||| ||||||||||| || || ||||||||||||| Sbjct: 63051 tgagcatgatctcggcgatctccttgacctccagcttggtgagttgcctgaagacgatca 63110 Query: 473 tttcgtcgagacggttgagaaactccggtcggaagtactgcttcatctc 521 | ||||||||||||||||| ||||| || |||||||||||||||||||| Sbjct: 63111 tctcgtcgagacggttgaggaactcggggcggaagtactgcttcatctc 63159
>emb|BX842241.1|CNS0B0PM Oryza sativa chromosome 12, . Partial sequence from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 45687 Score = 232 bits (117), Expect = 9e-58 Identities = 293/349 (83%), Gaps = 2/349 (0%) Strand = Plus / Plus Query: 174 gccattcagcacaatgactttcccctccgagtccacatcaacaatcacagagtcgccctc 233 ||||||||| ||||| || |||||||| || |||||||| ||||| |||| || ||||| Sbjct: 3426 gccattcagtacaatcaccttcccctcggaatccacatcgacaatggcagaatcaccctc 3485 Query: 234 cttgacctccccgcccaaaatcttctccgcgaggctgtcctccagaagcctcatgatcgc 293 ||| |||||||| | | |||||||||||||||||||||||||| ||||||||||| || Sbjct: 3486 cttcacctccccagctagcatcttctccgcgaggctgtcctccaggagcctcatgatggc 3545 Query: 294 cctcctcaatggccgcgctccgtagctagggttgtacccttcgtccacgacccgctcctt 353 |||||| | |||| ||| || ||||| |||||| | |||||||| |||| |||||||| Sbjct: 3546 cctccttagcggcctcgcaccatagctcgggttgaagccttcgtcaacgatacgctcctt 3605 Query: 354 gaacttctccgtcacctgcaggttgatgtccttgctcttcagcctagtgaaa-acctcct 412 ||||||||| || ||||| |||| ||||||||| ||| ||||| || ||| ||||||| Sbjct: 3606 gaacttctcggtgacctggaggtcaatgtccttggccttgagcct-gtcaaagacctcct 3664 Query: 413 gcagcattatgttcgcgatctctttgacttccagcttggtcagctgtctgaagacgatca 472 ||||| || | |||||||| ||||| ||||||||||| || || ||||||||||||| Sbjct: 3665 tgagcatgatctcggcgatctccttgacctccagcttggtgagttgcctgaagacgatca 3724 Query: 473 tttcgtcgagacggttgagaaactccggtcggaagtactgcttcatctc 521 | ||||||||||||||||| ||||| || |||||||||||||||||||| Sbjct: 3725 tctcgtcgagacggttgaggaactcggggcggaagtactgcttcatctc 3773
>dbj|AK066153.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013058A21, full insert sequence Length = 3088 Score = 212 bits (107), Expect = 9e-52 Identities = 283/339 (83%), Gaps = 2/339 (0%) Strand = Plus / Minus Query: 184 acaatgactttcccctccgagtccacatcaacaatcacagagtcgccctccttgacctcc 243 ||||| || |||||||| || |||||||| ||||| |||| || |||||||| |||||| Sbjct: 2834 acaatcaccttcccctcggaatccacatcgacaatggcagaatcaccctccttcacctcc 2775 Query: 244 ccgcccaaaatcttctccgcgaggctgtcctccagaagcctcatgatcgccctcctcaat 303 || | | |||||||||||||||||||||||||| ||||||||||| |||||||| | Sbjct: 2774 ccagctagcatcttctccgcgaggctgtcctccaggagcctcatgatggccctccttagc 2715 Query: 304 ggccgcgctccgtagctagggttgtacccttcgtccacgacccgctccttgaacttctcc 363 |||| ||| || ||||| |||||| | |||||||| |||| ||||||||||||||||| Sbjct: 2714 ggcctcgcaccatagctcgggttgaagccttcgtcaacgatacgctccttgaacttctcg 2655 Query: 364 gtcacctgcaggttgatgtccttgctcttcagcctagtgaaa-acctcctgcagcattat 422 || ||||| |||| | ||||||| ||| ||||| || ||| ||||||| ||||| || Sbjct: 2654 gtgacctggaggtcaacgtccttggccttgagcct-gtcaaagacctccttgagcatgat 2596 Query: 423 gttcgcgatctctttgacttccagcttggtcagctgtctgaagacgatcatttcgtcgag 482 | |||||||| ||||| ||||||||||| || || |||||||||||||| |||||||| Sbjct: 2595 ctcggcgatctccttgacctccagcttggtgagttgcctgaagacgatcatctcgtcgag 2536 Query: 483 acggttgagaaactccggtcggaagtactgcttcatctc 521 ||||||||| ||||| || |||||||||||||||||||| Sbjct: 2535 acggttgaggaactcggggcggaagtactgcttcatctc 2497
>ref|XM_472335.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2667 Score = 101 bits (51), Expect = 2e-18 Identities = 156/191 (81%) Strand = Plus / Minus Query: 196 ccctccgagtccacatcaacaatcacagagtcgccctccttgacctccccgcccaaaatc 255 ||||| || |||||||||||||| ||||||| || ||||||||||| || |||| ||| Sbjct: 2600 ccctctgaatccacatcaacaatagcagagtcaccttccttgacctcgccagccaacatc 2541 Query: 256 ttctccgcgaggctgtcctccagaagcctcatgatcgccctcctcaatggccgcgctccg 315 |||||||| | ||||||||||||||||||||| || || | || || |||| || || Sbjct: 2540 ttctccgccaagctgtcctccagaagcctcataatagcacgccgcagaggcctggcacca 2481 Query: 316 tagctagggttgtacccttcgtccacgacccgctccttgaacttctccgtcacctgcagg 375 ||||| |||||||| |||||||| || || | ||| ||||||||| |||||||| ||| Sbjct: 2480 tagcttgggttgtaaccttcgtcgacaactctatcccggaacttctctgtcacctggagg 2421 Query: 376 ttgatgtcctt 386 | ||||||||| Sbjct: 2420 tcgatgtcctt 2410 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 493 aactccggtcggaagtactgcttca 517 ||||| ||||||||||||||||||| Sbjct: 2303 aactcaggtcggaagtactgcttca 2279
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 101 bits (51), Expect = 2e-18 Identities = 156/191 (81%) Strand = Plus / Plus Query: 196 ccctccgagtccacatcaacaatcacagagtcgccctccttgacctccccgcccaaaatc 255 ||||| || |||||||||||||| ||||||| || ||||||||||| || |||| ||| Sbjct: 19610437 ccctctgaatccacatcaacaatagcagagtcaccttccttgacctcgccagccaacatc 19610496 Query: 256 ttctccgcgaggctgtcctccagaagcctcatgatcgccctcctcaatggccgcgctccg 315 |||||||| | ||||||||||||||||||||| || || | || || |||| || || Sbjct: 19610497 ttctccgccaagctgtcctccagaagcctcataatagcacgccgcagaggcctggcacca 19610556 Query: 316 tagctagggttgtacccttcgtccacgacccgctccttgaacttctccgtcacctgcagg 375 ||||| |||||||| |||||||| || || | ||| ||||||||| |||||||| ||| Sbjct: 19610557 tagcttgggttgtaaccttcgtcgacaactctatcccggaacttctctgtcacctggagg 19610616 Query: 376 ttgatgtcctt 386 | ||||||||| Sbjct: 19610617 tcgatgtcctt 19610627 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 493 aactccggtcggaagtactgcttca 517 ||||| ||||||||||||||||||| Sbjct: 19610734 aactcaggtcggaagtactgcttca 19610758
>dbj|AK058510.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-016-G07, full insert sequence Length = 1527 Score = 101 bits (51), Expect = 2e-18 Identities = 156/191 (81%) Strand = Plus / Minus Query: 196 ccctccgagtccacatcaacaatcacagagtcgccctccttgacctccccgcccaaaatc 255 ||||| || |||||||||||||| ||||||| || ||||||||||| || |||| ||| Sbjct: 1150 ccctctgaatccacatcaacaatagcagagtcaccttccttgacctcgccagccaacatc 1091 Query: 256 ttctccgcgaggctgtcctccagaagcctcatgatcgccctcctcaatggccgcgctccg 315 |||||||| | ||||||||||||||||||||| || || | || || |||| || || Sbjct: 1090 ttctccgccaagctgtcctccagaagcctcataatagcacgccgcagaggcctggcacca 1031 Query: 316 tagctagggttgtacccttcgtccacgacccgctccttgaacttctccgtcacctgcagg 375 ||||| |||||||| |||||||| || || | ||| ||||||||| |||||||| ||| Sbjct: 1030 tagcttgggttgtaaccttcgtcgacaactctatcccggaacttctctgtcacctggagg 971 Query: 376 ttgatgtcctt 386 | ||||||||| Sbjct: 970 tcgatgtcctt 960 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 493 aactccggtcggaagtactgcttca 517 ||||| ||||||||||||||||||| Sbjct: 853 aactcaggtcggaagtactgcttca 829
>emb|AL731591.3|OSJN00240 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0039C07, complete sequence Length = 166410 Score = 101 bits (51), Expect = 2e-18 Identities = 156/191 (81%) Strand = Plus / Plus Query: 196 ccctccgagtccacatcaacaatcacagagtcgccctccttgacctccccgcccaaaatc 255 ||||| || |||||||||||||| ||||||| || ||||||||||| || |||| ||| Sbjct: 61163 ccctctgaatccacatcaacaatagcagagtcaccttccttgacctcgccagccaacatc 61222 Query: 256 ttctccgcgaggctgtcctccagaagcctcatgatcgccctcctcaatggccgcgctccg 315 |||||||| | ||||||||||||||||||||| || || | || || |||| || || Sbjct: 61223 ttctccgccaagctgtcctccagaagcctcataatagcacgccgcagaggcctggcacca 61282 Query: 316 tagctagggttgtacccttcgtccacgacccgctccttgaacttctccgtcacctgcagg 375 ||||| |||||||| |||||||| || || | ||| ||||||||| |||||||| ||| Sbjct: 61283 tagcttgggttgtaaccttcgtcgacaactctatcccggaacttctctgtcacctggagg 61342 Query: 376 ttgatgtcctt 386 | ||||||||| Sbjct: 61343 tcgatgtcctt 61353 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 493 aactccggtcggaagtactgcttca 517 ||||| ||||||||||||||||||| Sbjct: 61460 aactcaggtcggaagtactgcttca 61484
>dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete genome Length = 2696255 Score = 77.8 bits (39), Expect = 3e-11 Identities = 78/91 (85%) Strand = Plus / Minus Query: 427 gcgatctctttgacttccagcttggtcagctgtctgaagacgatcatttcgtcgagacgg 486 ||||| ||||||||||| |||| | ||||| | ||||||||| ||||||||||||||| Sbjct: 1364633 gcgatttctttgacttcttccttgttgagctgacagaagacgatgatttcgtcgagacgg 1364574 Query: 487 ttgagaaactccggtcggaagtactgcttca 517 || |||||||| || |||||||| ||||||| Sbjct: 1364573 ttcagaaactcaggacggaagtattgcttca 1364543
>gb|U16134.1|SSU16134 Synechococcus sp. Clp protease putative regulatory subunit (clpC) gene, complete cds Length = 2935 Score = 77.8 bits (39), Expect = 3e-11 Identities = 78/91 (85%) Strand = Plus / Minus Query: 427 gcgatctctttgacttccagcttggtcagctgtctgaagacgatcatttcgtcgagacgg 486 ||||| ||||||||||| |||| | ||||| | ||||||||| ||||||||||||||| Sbjct: 2529 gcgatttctttgacttcttccttgttgagctgacggaagacgatgatttcgtcgagacgg 2470 Query: 487 ttgagaaactccggtcggaagtactgcttca 517 || |||||||| || |||||||| ||||||| Sbjct: 2469 ttcagaaactcaggacggaagtattgcttca 2439
>gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome Length = 2695903 Score = 77.8 bits (39), Expect = 3e-11 Identities = 78/91 (85%) Strand = Plus / Plus Query: 427 gcgatctctttgacttccagcttggtcagctgtctgaagacgatcatttcgtcgagacgg 486 ||||| ||||||||||| |||| | ||||| | ||||||||| ||||||||||||||| Sbjct: 256250 gcgatttctttgacttcttccttgttgagctgacggaagacgatgatttcgtcgagacgg 256309 Query: 487 ttgagaaactccggtcggaagtactgcttca 517 || |||||||| || |||||||| ||||||| Sbjct: 256310 ttcagaaactcaggacggaagtattgcttca 256340
>gb|AC135498.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0010M24, complete sequence Length = 164853 Score = 71.9 bits (36), Expect = 2e-09 Identities = 105/128 (82%) Strand = Plus / Minus Query: 253 atcttctccgcgaggctgtcctccagaagcctcatgatcgccctcctcaatggccgcgct 312 ||||||||||||||| |||||||||| |||| || || |||| ||||| |||| ||| Sbjct: 85907 atcttctccgcgagggtgtcctccagcagccgcacgacggcccgcctcagcggcctcgcg 85848 Query: 313 ccgtagctagggttgtacccttcgtccacgacccgctccttgaacttctccgtcacctgc 372 |||||||| |||| | | || || |||||||| ||||| ||||||| |||||||||| | Sbjct: 85847 ccgtagctcgggtcgaatccctcctccacgacgagctccctgaacttgtccgtcaccttc 85788 Query: 373 aggttgat 380 || ||||| Sbjct: 85787 agcttgat 85780
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 71.9 bits (36), Expect = 2e-09 Identities = 105/128 (82%) Strand = Plus / Plus Query: 253 atcttctccgcgaggctgtcctccagaagcctcatgatcgccctcctcaatggccgcgct 312 ||||||||||||||| |||||||||| |||| || || |||| ||||| |||| ||| Sbjct: 9198113 atcttctccgcgagggtgtcctccagcagccgcacgacggcccgcctcagcggcctcgcg 9198172 Query: 313 ccgtagctagggttgtacccttcgtccacgacccgctccttgaacttctccgtcacctgc 372 |||||||| |||| | | || || |||||||| ||||| ||||||| |||||||||| | Sbjct: 9198173 ccgtagctcgggtcgaatccctcctccacgacgagctccctgaacttgtccgtcaccttc 9198232 Query: 373 aggttgat 380 || ||||| Sbjct: 9198233 agcttgat 9198240 Score = 60.0 bits (30), Expect = 8e-06 Identities = 87/106 (82%) Strand = Plus / Plus Query: 269 tgtcctccagaagcctcatgatcgccctcctcaatggccgcgctccgtagctagggttgt 328 |||||||||| |||| |||||| |||| | || |||||||| |||||||| |||| | Sbjct: 9094786 tgtcctccagcagccgcatgatggcccggcgcagcggccgcgcgccgtagctcgggtcga 9094845 Query: 329 acccttcgtccacgacccgctccttgaacttctccgtcacctgcag 374 | |||| || ||||| ||||||||||| |||||||||||||||| Sbjct: 9094846 agccttgctcgacgacgagctccttgaacctctccgtcacctgcag 9094891
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 71.9 bits (36), Expect = 2e-09 Identities = 105/128 (82%) Strand = Plus / Plus Query: 253 atcttctccgcgaggctgtcctccagaagcctcatgatcgccctcctcaatggccgcgct 312 ||||||||||||||| |||||||||| |||| || || |||| ||||| |||| ||| Sbjct: 9269810 atcttctccgcgagggtgtcctccagcagccgcacgacggcccgcctcagcggcctcgcg 9269869 Query: 313 ccgtagctagggttgtacccttcgtccacgacccgctccttgaacttctccgtcacctgc 372 |||||||| |||| | | || || |||||||| ||||| ||||||| |||||||||| | Sbjct: 9269870 ccgtagctcgggtcgaatccctcctccacgacgagctccctgaacttgtccgtcaccttc 9269929 Query: 373 aggttgat 380 || ||||| Sbjct: 9269930 agcttgat 9269937 Score = 60.0 bits (30), Expect = 8e-06 Identities = 87/106 (82%) Strand = Plus / Plus Query: 269 tgtcctccagaagcctcatgatcgccctcctcaatggccgcgctccgtagctagggttgt 328 |||||||||| |||| |||||| |||| | || |||||||| |||||||| |||| | Sbjct: 9166483 tgtcctccagcagccgcatgatggcccggcgcagcggccgcgcgccgtagctcgggtcga 9166542 Query: 329 acccttcgtccacgacccgctccttgaacttctccgtcacctgcag 374 | |||| || ||||| ||||||||||| |||||||||||||||| Sbjct: 9166543 agccttgctcgacgacgagctccttgaacctctccgtcacctgcag 9166588
>emb|X75328.1|BNCLPA B.napus (Topas) clpA mRNA Length = 2837 Score = 65.9 bits (33), Expect = 1e-07 Identities = 75/89 (84%) Strand = Plus / Minus Query: 253 atcttctccgcgaggctgtcctccagaagcctcatgatcgccctcctcaatggccgcgct 312 ||||||||| | | ||| ||||||| ||| |||||||| || |||||||| || | |||| Sbjct: 2488 atcttctcctccatgctatcctccaaaagtctcatgatggctctcctcaacggtctcgct 2429 Query: 313 ccgtagctagggttgtacccttcgtccac 341 || ||||| |||||||| ||||||||||| Sbjct: 2428 ccatagctcgggttgtaaccttcgtccac 2400 Score = 54.0 bits (27), Expect = 5e-04 Identities = 66/79 (83%) Strand = Plus / Minus Query: 439 acttccagcttggtcagctgtctgaagacgatcatttcgtcgagacggttgagaaactcc 498 ||||||| ||| || ||||||||||| | ||||| ||||| || | |||||| |||||| Sbjct: 2302 acttccaacttcgttagctgtctgaacagaatcatctcgtcaagcctgttgaggaactcc 2243 Query: 499 ggtcggaagtactgcttca 517 |||| ||||||||| |||| Sbjct: 2242 ggtctgaagtactgtttca 2224
>gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome Length = 3046682 Score = 61.9 bits (31), Expect = 2e-06 Identities = 61/71 (85%) Strand = Plus / Minus Query: 447 cttggtcagctgtctgaagacgatcatttcgtcgagacggttgagaaactccggtcggaa 506 ||||||||| || | ||||||||| || ||||| | |||||||| |||||||| ||||| Sbjct: 619794 cttggtcagttgccggaagacgatgatctcgtccacgcggttgaggaactccggacggaa 619735 Query: 507 gtactgcttca 517 ||||||||||| Sbjct: 619734 gtactgcttca 619724 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 484 cggttgagaaactccggtcggaagt 508 |||||||| |||||||||||||||| Sbjct: 2623570 cggttgaggaactccggtcggaagt 2623594
>dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome Length = 6413771 Score = 61.9 bits (31), Expect = 2e-06 Identities = 67/79 (84%) Strand = Plus / Minus Query: 439 acttccagcttggtcagctgtctgaagacgatcatttcgtcgagacggttgagaaactcc 498 ||||| |||||| ||| ||| | ||||||||| || ||||| ||||||||||| ||||| Sbjct: 3644559 acttctagcttgctcaactgacggaagacgataatctcgtctagacggttgaggaactca 3644500 Query: 499 ggtcggaagtactgcttca 517 || |||||||| ||||||| Sbjct: 3644499 ggacggaagtattgcttca 3644481
>gb|CP000110.1| Synechococcus sp. CC9605, complete genome Length = 2510659 Score = 60.0 bits (30), Expect = 8e-06 Identities = 48/54 (88%) Strand = Plus / Plus Query: 462 gaagacgatcatttcgtcgagacggttgagaaactccggtcggaagtactgctt 515 ||||||||| || ||||||||||||||||| || || || |||||||||||||| Sbjct: 1496399 gaagacgataatctcgtcgagacggttgaggaattcagggcggaagtactgctt 1496452
>gb|AC138005.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0038O16, complete sequence Length = 37350 Score = 60.0 bits (30), Expect = 8e-06 Identities = 87/106 (82%) Strand = Plus / Plus Query: 269 tgtcctccagaagcctcatgatcgccctcctcaatggccgcgctccgtagctagggttgt 328 |||||||||| |||| |||||| |||| | || |||||||| |||||||| |||| | Sbjct: 5976 tgtcctccagcagccgcatgatggcccggcgcagcggccgcgcgccgtagctcgggtcga 6035 Query: 329 acccttcgtccacgacccgctccttgaacttctccgtcacctgcag 374 | |||| || ||||| ||||||||||| |||||||||||||||| Sbjct: 6036 agccttgctcgacgacgagctccttgaacctctccgtcacctgcag 6081
>gb|AC138002.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0011I07 map S10207, complete sequence Length = 123847 Score = 60.0 bits (30), Expect = 8e-06 Identities = 87/106 (82%) Strand = Plus / Plus Query: 269 tgtcctccagaagcctcatgatcgccctcctcaatggccgcgctccgtagctagggttgt 328 |||||||||| |||| |||||| |||| | || |||||||| |||||||| |||| | Sbjct: 103360 tgtcctccagcagccgcatgatggcccggcgcagcggccgcgcgccgtagctcgggtcga 103419 Query: 329 acccttcgtccacgacccgctccttgaacttctccgtcacctgcag 374 | |||| || ||||| ||||||||||| |||||||||||||||| Sbjct: 103420 agccttgctcgacgacgagctccttgaacctctccgtcacctgcag 103465
>dbj|AK100126.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023008I20, full insert sequence Length = 3229 Score = 60.0 bits (30), Expect = 8e-06 Identities = 87/106 (82%) Strand = Plus / Minus Query: 269 tgtcctccagaagcctcatgatcgccctcctcaatggccgcgctccgtagctagggttgt 328 |||||||||| |||| |||||| |||| | || |||||||| |||||||| |||| | Sbjct: 2820 tgtcctccagcagccgcatgatggcccggcgcagcggccgcgcgccgtagctcgggtcga 2761 Query: 329 acccttcgtccacgacccgctccttgaacttctccgtcacctgcag 374 | |||| || ||||| ||||||||||| |||||||||||||||| Sbjct: 2760 agccttgctcgacgacgagctccttgaacctctccgtcacctgcag 2715
>dbj|AK069552.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023023N03, full insert sequence Length = 3226 Score = 60.0 bits (30), Expect = 8e-06 Identities = 87/106 (82%) Strand = Plus / Minus Query: 269 tgtcctccagaagcctcatgatcgccctcctcaatggccgcgctccgtagctagggttgt 328 |||||||||| |||| |||||| |||| | || |||||||| |||||||| |||| | Sbjct: 2812 tgtcctccagcagccgcatgatggcccggcgcagcggccgcgcgccgtagctcgggtcga 2753 Query: 329 acccttcgtccacgacccgctccttgaacttctccgtcacctgcag 374 | |||| || ||||| ||||||||||| |||||||||||||||| Sbjct: 2752 agccttgctcgacgacgagctccttgaacctctccgtcacctgcag 2707
>gb|AF053562.1|AF053562 Mesembryanthemum crystallinum ATP-dependent protease mRNA, partial cds Length = 531 Score = 58.0 bits (29), Expect = 3e-05 Identities = 65/77 (84%) Strand = Plus / Minus Query: 253 atcttctccgcgaggctgtcctccagaagcctcatgatcgccctcctcaatggccgcgct 312 |||||||| || | ||||||||||||||| ||||| || |||||||||| ||||| || Sbjct: 101 atcttctcggccatgctgtcctccagaagtctcataatagccctcctcagaggccgagca 42 Query: 313 ccgtagctagggttgta 329 || ||||| |||||||| Sbjct: 41 ccatagctggggttgta 25
>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome Length = 2932766 Score = 54.0 bits (27), Expect = 5e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 447 cttggtcagctgtctgaagacgatcatttcgtcgagacggttgagaaactccggtcggaa 506 ||||||||| || | ||||||||| || ||||| | |||||||| ||||| || ||||| Sbjct: 666391 cttggtcagttgccggaagacgatgatctcgtccacccggttgaggaactcggggcggaa 666332 Query: 507 gtactgcttca 517 ||||||||||| Sbjct: 666331 gtactgcttca 666321
>ref|NM_124471.2| Arabidopsis thaliana CLPC; ATP binding / ATPase AT5G50920 (CLPC) mRNA, complete cds Length = 3183 Score = 50.1 bits (25), Expect = 0.007 Identities = 64/77 (83%) Strand = Plus / Minus Query: 433 tctttgacttccagcttggtcagctgtctgaagacgatcatttcgtcgagacggttgaga 492 ||||| ||||||||||| || ||||||||||| || ||||| ||||| || | ||| || Sbjct: 2626 tctttcacttccagctttgttagctgtctgaacacaatcatctcgtctagcctgtttagg 2567 Query: 493 aactccggtcggaagta 509 ||||| |||| |||||| Sbjct: 2566 aactcgggtctgaagta 2550
>gb|AY102125.1| Arabidopsis thaliana AT5g50920/K3K7_7 mRNA, complete cds Length = 3125 Score = 50.1 bits (25), Expect = 0.007 Identities = 64/77 (83%) Strand = Plus / Minus Query: 433 tctttgacttccagcttggtcagctgtctgaagacgatcatttcgtcgagacggttgaga 492 ||||| ||||||||||| || ||||||||||| || ||||| ||||| || | ||| || Sbjct: 2601 tctttcacttccagctttgttagctgtctgaacacaatcatctcgtctagcctgtttagg 2542 Query: 493 aactccggtcggaagta 509 ||||| |||| |||||| Sbjct: 2541 aactcgggtctgaagta 2525
>dbj|AK220924.1| Arabidopsis thaliana mRNA for ATP-dependent Clp protease, ATP-binding subunit, complete cds, clone: RAFL22-49-P06 Length = 774 Score = 50.1 bits (25), Expect = 0.007 Identities = 64/77 (83%) Strand = Plus / Minus Query: 433 tctttgacttccagcttggtcagctgtctgaagacgatcatttcgtcgagacggttgaga 492 ||||| ||||||||||| || ||||||||||| || ||||| ||||| || | ||| || Sbjct: 258 tctttcacttccagctttgttagctgtctgaacacaatcatctcgtctagcctgtttagg 199 Query: 493 aactccggtcggaagta 509 ||||| |||| |||||| Sbjct: 198 aactcgggtctgaagta 182
>emb|BX830850.1|CNS0A0O2 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS30ZG04 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1161 Score = 50.1 bits (25), Expect = 0.007 Identities = 64/77 (83%) Strand = Plus / Minus Query: 433 tctttgacttccagcttggtcagctgtctgaagacgatcatttcgtcgagacggttgaga 492 ||||| ||||||||||| || ||||||||||| || ||||| ||||| || | ||| || Sbjct: 672 tctttcacttccagctttgttagctgtctgaacacaatcatctcgtctagcctgtttagg 613 Query: 493 aactccggtcggaagta 509 ||||| |||| |||||| Sbjct: 612 aactcgggtctgaagta 596
>dbj|AB017063.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K3K7 Length = 68726 Score = 50.1 bits (25), Expect = 0.007 Identities = 64/77 (83%) Strand = Plus / Plus Query: 433 tctttgacttccagcttggtcagctgtctgaagacgatcatttcgtcgagacggttgaga 492 ||||| ||||||||||| || ||||||||||| || ||||| ||||| || | ||| || Sbjct: 18518 tctttcacttccagctttgttagctgtctgaacacaatcatctcgtctagcctgtttagg 18577 Query: 493 aactccggtcggaagta 509 ||||| |||| |||||| Sbjct: 18578 aactcgggtctgaagta 18594
>gb|AY837846.1| Bifidobacterium animalis subsp. animalis ATCC 25527 ctA, ClpB (clpB), and FaaH (faaH) genes, complete cds Length = 5198 Score = 48.1 bits (24), Expect = 0.029 Identities = 30/32 (93%) Strand = Plus / Plus Query: 475 tcgtcgagacggttgagaaactccggtcggaa 506 ||||||||||||||||| |||||||| ||||| Sbjct: 1836 tcgtcgagacggttgaggaactccggacggaa 1867
>emb|BX569691.1| Synechococcus sp. WH8102 complete genome; segment 3/7 Length = 347365 Score = 48.1 bits (24), Expect = 0.029 Identities = 45/52 (86%) Strand = Plus / Minus Query: 466 acgatcatttcgtcgagacggttgagaaactccggtcggaagtactgcttca 517 ||||| || |||||||| |||||||| || || || |||||||||||||||| Sbjct: 202083 acgatgatctcgtcgagccggttgaggaattcagggcggaagtactgcttca 202032
>gb|AF043539.1|AF043539 Spinacia oleracea ClpC protease (clpC) mRNA, chloroplast gene encoding chloroplast protein, complete cds Length = 2992 Score = 48.1 bits (24), Expect = 0.029 Identities = 63/76 (82%) Strand = Plus / Minus Query: 271 tcctccagaagcctcatgatcgccctcctcaatggccgcgctccgtagctagggttgtac 330 ||||||||||| ||||| || ||||||||||| || | || || || ||||||||||| Sbjct: 2773 tcctccagaagtctcataatagccctcctcaaaggtctagcaccataactagggttgtag 2714 Query: 331 ccttcgtccacgaccc 346 ||||| ||||| |||| Sbjct: 2713 ccttcatccaccaccc 2698
>emb|BX572098.1| Prochlorococcus marinus MIT9313 complete genome; segment 4/7 Length = 346683 Score = 48.1 bits (24), Expect = 0.029 Identities = 42/48 (87%) Strand = Plus / Minus Query: 462 gaagacgatcatttcgtcgagacggttgagaaactccggtcggaagta 509 ||||||||| ||||| ||||||||||| ||||| || || |||||||| Sbjct: 97628 gaagacgataatttcatcgagacggttcagaaattcaggacggaagta 97581
>gb|AF022909.1| Arabidopsis thaliana ClpC mRNA, nuclear gene encoding chloroplast protein, complete cds Length = 2912 Score = 46.1 bits (23), Expect = 0.11 Identities = 41/47 (87%) Strand = Plus / Minus Query: 433 tctttgacttccagcttggtcagctgtctgaagacgatcatttcgtc 479 ||||| ||||||||||| || ||||||||||| || ||||| ||||| Sbjct: 2574 tctttcacttccagctttgttagctgtctgaacacaatcatctcgtc 2528
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 44.1 bits (22), Expect = 0.45 Identities = 46/54 (85%) Strand = Plus / Minus Query: 462 gaagacgatcatttcgtcgagacggttgagaaactccggtcggaagtactgctt 515 |||||| || || |||||||| || ||||| ||||| || |||||||||||||| Sbjct: 2217650 gaagacaatgatctcgtcgaggcgattgaggaactcggggcggaagtactgctt 2217597 Score = 44.1 bits (22), Expect = 0.45 Identities = 40/46 (86%) Strand = Plus / Minus Query: 462 gaagacgatcatttcgtcgagacggttgagaaactccggtcggaag 507 ||||||||||| |||||||| |||||||| ||||| || |||||| Sbjct: 1664658 gaagacgatcacctcgtcgaggcggttgaggaactcggggcggaag 1664613
>gb|AC140431.4| Mus musculus BAC clone RP24-172K3 from chromosome 7, complete sequence Length = 172958 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 433 tctttgacttccagcttggtc 453 ||||||||||||||||||||| Sbjct: 11332 tctttgacttccagcttggtc 11352
>gb|AC131706.4| Mus musculus BAC clone RP24-136E12 from chromosome 7, complete sequence Length = 127581 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 433 tctttgacttccagcttggtc 453 ||||||||||||||||||||| Sbjct: 117932 tctttgacttccagcttggtc 117952 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 433 tctttgacttccagcttggtc 453 ||||||||||||||||||||| Sbjct: 95665 tctttgacttccagcttggtc 95685
>emb|CR450771.10| Zebrafish DNA sequence from clone CH211-152D1 in linkage group 2, complete sequence Length = 152893 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 76 tgaaatgaaaatgctgaattg 96 ||||||||||||||||||||| Sbjct: 132225 tgaaatgaaaatgctgaattg 132245
>ref|XM_504490.1| Yarrowia lipolytica CLIB122, YALI0E27962g predicted mRNA Length = 2664 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 484 cggttgagaaactccggtcggaagt 508 |||||||||||||| |||||||||| Sbjct: 2276 cggttgagaaactcgggtcggaagt 2252
>gb|AE004483.1| Pseudomonas aeruginosa PAO1, section 44 of 529 of the complete genome Length = 10202 Score = 42.1 bits (21), Expect = 1.8 Identities = 39/45 (86%) Strand = Plus / Minus Query: 462 gaagacgatcatttcgtcgagacggttgagaaactccggtcggaa 506 ||||||||||| |||||||| |||||||| || ||||| ||||| Sbjct: 9696 gaagacgatcacctcgtcgaggcggttgaggaattccgggcggaa 9652
>ref|XM_218523.3| PREDICTED: Rattus norvegicus CD22 antigen (predicted) (Cd22_predicted), mRNA Length = 3042 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 218 tcacagagtcgccctccttgacctc 242 ||||||||| ||||||||||||||| Sbjct: 1273 tcacagagttgccctccttgacctc 1249
>dbj|D29692.1|RICYK4 Oryza sativa mRNA, partial homologous to ATP-dependent protease gene Length = 349 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 493 aactccggtcggaagtactgcttca 517 ||||| ||||||||||||||||||| Sbjct: 191 aactcaggtcggaagtactgcttca 167
>emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia lipolytica Length = 4224103 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 484 cggttgagaaactccggtcggaagt 508 |||||||||||||| |||||||||| Sbjct: 3309197 cggttgagaaactcgggtcggaagt 3309221
>ref|NM_114746.2| Arabidopsis thaliana ATCLPC; ATP binding / ATPase/ DNA binding / nuclease/ nucleoside-triphosphatase/ nucleotide binding / protein binding AT3G48870 (ATCLPC) mRNA, complete cds Length = 3130 Score = 40.1 bits (20), Expect = 7.0 Identities = 38/44 (86%) Strand = Plus / Minus Query: 430 atctctttgacttccagcttggtcagctgtctgaagacgatcat 473 ||||| |||||||||||||| || | ||||||||| || ||||| Sbjct: 2643 atctccttgacttccagctttgttaactgtctgaaaacaatcat 2600
>gb|AC132617.4| Mus musculus BAC clone RP23-230A6 from chromosome 12, complete sequence Length = 239046 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 191 ctttcccctccgagtccaca 210 |||||||||||||||||||| Sbjct: 31244 ctttcccctccgagtccaca 31225
>gb|AC150386.2| Branchiostoma floridae clone CH302-103G16, complete sequence Length = 195926 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 349 tccttgaacttctccgtcac 368 |||||||||||||||||||| Sbjct: 2257 tccttgaacttctccgtcac 2276
>gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, complete sequence Length = 6365727 Score = 40.1 bits (20), Expect = 7.0 Identities = 47/56 (83%) Strand = Plus / Plus Query: 462 gaagacgatcatttcgtcgagacggttgagaaactccggtcggaagtactgcttca 517 ||||||||| || || || ||||||||||| || || || |||||||| ||||||| Sbjct: 1102711 gaagacgataatctcatctagacggttgaggaattcaggacggaagtattgcttca 1102766
>gb|AC153919.8| Mus musculus 10 BAC RP23-91E23 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 264561 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 230 cctccttgacctccccgccc 249 |||||||||||||||||||| Sbjct: 262803 cctccttgacctccccgccc 262784
>emb|Z71261.1|CEF21C3 Caenorhabditis elegans Cosmid F21C3, complete sequence Length = 26195 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 tatacagttacaattatata 37 |||||||||||||||||||| Sbjct: 7289 tatacagttacaattatata 7308
>gb|AC159474.9| Mus musculus 10 BAC RP23-28P17 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 230201 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 230 cctccttgacctccccgccc 249 |||||||||||||||||||| Sbjct: 181951 cctccttgacctccccgccc 181932
>emb|AL596451.4| Human DNA sequence from clone RP11-75C9 on chromosome 9 Contains 2 novel genes, complete sequence Length = 130513 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 73 gaatgaaatgaaaatgctga 92 |||||||||||||||||||| Sbjct: 96698 gaatgaaatgaaaatgctga 96717
>emb|AL121905.23|HSDJ534B8 Human DNA sequence from clone RP4-534B8 on chromosome 20 Contains the 3' end of the PTPRA gene for protein tyrosine phosphatase receptor type A, the GNRH2 gene for gonadotropin-releasing hormone 2, a novel gene and two CpG islands, complete sequence Length = 126679 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 282 cctcatgatcgccctcctca 301 |||||||||||||||||||| Sbjct: 4562 cctcatgatcgccctcctca 4581
>emb|AL009177.1|HS365E2 Human DNA sequence from clone RP3-365E2 on chromosome 6p22.3-24.1, complete sequence Length = 137730 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 105 acaatctatctatataccaactac 128 |||||||| ||||||||||||||| Sbjct: 99131 acaatctaactatataccaactac 99154
>emb|BX251412.1| Tropheryma whipplei TW08/27, complete genome; segment 3/3 Length = 302938 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 294 cctcctcaatggccgcgctccgta 317 |||||||||||||||||| ||||| Sbjct: 231785 cctcctcaatggccgcgcgccgta 231808
>emb|AL132963.1|ATT21J18 Arabidopsis thaliana DNA chromosome 3, BAC clone T21J18 Length = 82912 Score = 40.1 bits (20), Expect = 7.0 Identities = 38/44 (86%) Strand = Plus / Plus Query: 430 atctctttgacttccagcttggtcagctgtctgaagacgatcat 473 ||||| |||||||||||||| || | ||||||||| || ||||| Sbjct: 71124 atctccttgacttccagctttgttaactgtctgaaaacaatcat 71167
>gb|AC090340.6| Homo sapiens chromosome 18, clone RP11-714M23, complete sequence Length = 170969 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 109 tctatctatataccaactacttat 132 ||||||||||||| |||||||||| Sbjct: 105274 tctatctatatactaactacttat 105251
>gb|AC155937.4| Mus musculus 10 BAC RP24-535C14 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 152468 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 230 cctccttgacctccccgccc 249 |||||||||||||||||||| Sbjct: 118716 cctccttgacctccccgccc 118735
>gb|AY056787.1| Arabidopsis thaliana AT3g48870/T21J18_140 mRNA, complete cds Length = 3105 Score = 40.1 bits (20), Expect = 7.0 Identities = 38/44 (86%) Strand = Plus / Minus Query: 430 atctctttgacttccagcttggtcagctgtctgaagacgatcat 473 ||||| |||||||||||||| || | ||||||||| || ||||| Sbjct: 2644 atctccttgacttccagctttgttaactgtctgaaaacaatcat 2601
>gb|AC092217.1|AC092217 Drosophila melanogaster, chromosome 2L, region 24D-24E, BAC clone BACR11D14, complete sequence Length = 158347 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 69 gctggaatgaaatgaaaatg 88 |||||||||||||||||||| Sbjct: 127206 gctggaatgaaatgaaaatg 127225
>ref|NM_059653.3| Caenorhabditis elegans TWiK family of potassium channels family member (twk-1) (twk-1) mRNA, complete cds Length = 1440 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 tatacagttacaattatata 37 |||||||||||||||||||| Sbjct: 674 tatacagttacaattatata 655
>gb|AC105054.6| Homo sapiens BAC clone RP11-722I12 from 2, complete sequence Length = 203061 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 66 tgtgctggaatgaaatgaaa 85 |||||||||||||||||||| Sbjct: 67326 tgtgctggaatgaaatgaaa 67307
>gb|AC008062.3| Homo sapiens BAC clone RP11-68L6 from 2, complete sequence Length = 131250 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 ggaatgaaatgaaaatgctg 91 |||||||||||||||||||| Sbjct: 106572 ggaatgaaatgaaaatgctg 106553
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 7.0 Identities = 47/56 (83%) Strand = Plus / Minus Query: 462 gaagacgatcatttcgtcgagacggttgagaaactccggtcggaagtactgcttca 517 ||||||||||| ||||||| |||||||| ||||| || ||||||| || ||||| Sbjct: 435610 gaagacgatcacgtcgtcgatgcggttgaggaactcgggccggaagtgcttcttca 435555
>dbj|AB022324.1| Arabidopsis thaliana mRNA for AtClpC, complete cds Length = 3090 Score = 40.1 bits (20), Expect = 7.0 Identities = 38/44 (86%) Strand = Plus / Minus Query: 430 atctctttgacttccagcttggtcagctgtctgaagacgatcat 473 ||||| |||||||||||||| || | ||||||||| || ||||| Sbjct: 2628 atctccttgacttccagctttgttaactgtctgaaaacaatcat 2585
>gb|AE014184.1| Tropheryma whipplei str. Twist, complete genome Length = 927303 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 294 cctcctcaatggccgcgctccgta 317 |||||||||||||||||| ||||| Sbjct: 856097 cctcctcaatggccgcgcgccgta 856120
>emb|BX548009.4| Zebrafish DNA sequence from clone CH211-237K17 in linkage group 3, complete sequence Length = 128639 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 73 gaatgaaatgaaaatgctgaattg 96 ||||||||||||| |||||||||| Sbjct: 36109 gaatgaaatgaaagtgctgaattg 36132
>gb|AE003577.4| Drosophila melanogaster chromosome 2L, section 14 of 83 of the complete sequence Length = 290034 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 gctggaatgaaatgaaaatg 88 |||||||||||||||||||| Sbjct: 124401 gctggaatgaaatgaaaatg 124382
>gb|DQ332898.1| Synthetic construct Saccharomyces cerevisiae clone FLH113431.01X MSR1 gene, complete sequence Length = 1932 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 84 aaatgctgaattggctgctt 103 |||||||||||||||||||| Sbjct: 767 aaatgctgaattggctgctt 748
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 40.1 bits (20), Expect = 7.0 Identities = 35/40 (87%) Strand = Plus / Plus Query: 461 tgaagacgatcatttcgtcgagacggttgagaaactccgg 500 |||||||||||| |||||||| ||||| || |||||||| Sbjct: 1656830 tgaagacgatcacgtcgtcgagccggttcaggaactccgg 1656869
>gb|AF033001.1|AF033001 Cerebratulus lacteus neural globin gene, complete cds Length = 4019 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 245 cgcccaaaatcttctccgcg 264 |||||||||||||||||||| Sbjct: 236 cgcccaaaatcttctccgcg 217
>gb|AC164879.2| Mus musculus BAC clone RP23-354H10 from chromosome 14, complete sequence Length = 210602 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 101 cttaacaatctatctatata 120 |||||||||||||||||||| Sbjct: 111330 cttaacaatctatctatata 111349
>gb|AC004371.1|AC004371 Drosophila melanogaster DNA sequence (P1 DS06482 (D76)), complete sequence Length = 87124 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 gctggaatgaaatgaaaatg 88 |||||||||||||||||||| Sbjct: 34631 gctggaatgaaatgaaaatg 34612
>gb|AC003971.1|AC003971 Human BAC 367D17 from chromosome 18, complete sequence Length = 87978 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 109 tctatctatataccaactacttat 132 ||||||||||||| |||||||||| Sbjct: 4425 tctatctatatactaactacttat 4402
>gb|U00060.1|YSCH9332 Saccharomyces cerevisiae chromosome VIII cosmid 9332 Length = 36176 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 84 aaatgctgaattggctgctt 103 |||||||||||||||||||| Sbjct: 8131 aaatgctgaattggctgctt 8150
>gb|L39019.1|YSCMSR1A Saccharomyces cerevisiae nuclear-encoded mitochondrial arginyl-tRNA synthetase (MSR1) gene, complete cds Length = 2070 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 84 aaatgctgaattggctgctt 103 |||||||||||||||||||| Sbjct: 896 aaatgctgaattggctgctt 877
>gb|AC151981.3| Mus musculus BAC clone RP24-66K3 from chromosome 12, complete sequence Length = 185710 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 191 ctttcccctccgagtccaca 210 |||||||||||||||||||| Sbjct: 120624 ctttcccctccgagtccaca 120605 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,276,297 Number of Sequences: 3902068 Number of extensions: 4276297 Number of successful extensions: 85507 Number of sequences better than 10.0: 78 Number of HSP's better than 10.0 without gapping: 78 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 84969 Number of HSP's gapped (non-prelim): 535 length of query: 521 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 498 effective length of database: 17,143,297,704 effective search space: 8537362256592 effective search space used: 8537362256592 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)