ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd25i09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YQBQ_BACSU (P45950) Hypothetical protein yqbQ 30 4.4
2PTDSR_HYDAT (Q6Q4H1) Protein PSR (Phosphatidylserine receptor) 30 5.7
3YAN2_SCHPO (Q10068) Hypothetical protein C3H1.02c in chromosome I 29 9.8
4K6PF1_YEAST (P16861) 6-phosphofructokinase alpha subunit (EC 2.7... 29 9.8
5TEAD4_CHICK (P48984) Transcriptional enhancer factor TEF-3 (TEA ... 29 9.8

>YQBQ_BACSU (P45950) Hypothetical protein yqbQ|
          Length = 326

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -3

Query: 329 LSDTMTQSKYDRQQTNKCYRSLDGDMEGISSLG 231
           ++DT T+ K  RQ+ NK Y +   D  GIS  G
Sbjct: 197 INDTATKVKLRRQKDNKTYTATASDSSGISKYG 229



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>PTDSR_HYDAT (Q6Q4H1) Protein PSR (Phosphatidylserine receptor)|
          Length = 385

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 20/58 (34%), Positives = 26/58 (44%)
 Frame = -3

Query: 341 VDDRLSDTMTQSKYDRQQTNKCYRSLDGDMEGISSLGNDNRFSIPMAHAMMTLPDDHC 168
           +D R  D + ++K       K    L GD EG + LG  N F +   H   TLP  HC
Sbjct: 1   MDKRTDDAVRETKL------KARPELKGD-EGWTRLGYANNFDLSYQHIKDTLPRIHC 51



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>YAN2_SCHPO (Q10068) Hypothetical protein C3H1.02c in chromosome I|
          Length = 1036

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 15/55 (27%), Positives = 28/55 (50%)
 Frame = -1

Query: 607 SSPVCEDGKTSMNHAADLAIECMETSE*KVLVDYNYYQIGQQKNACARVAVRKIR 443
           S  V  + + + +   D+  +CM TS+  V   Y YY+ G   +   ++++ KIR
Sbjct: 147 SGVVYSEMQNTQSSETDVMFDCMRTSQYPVTSGY-YYETGGHPSELRKLSIEKIR 200



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>K6PF1_YEAST (P16861) 6-phosphofructokinase alpha subunit (EC 2.7.1.11)|
           (Phosphofructokinase 1) (Phosphohexokinase) (6PF-1-K
           alpha subunit)
          Length = 987

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
 Frame = -1

Query: 580 TSMNHAADLAIECMETSE*KVLVDYNYYQIGQQK---NACARVAVRKIRRNKTTQQDQQV 410
           TS +   ++ +E  + SE    VD + ++I QQ+    A ++ A+ KIR   +   D+  
Sbjct: 56  TSQDSLREVWLESFKLSE----VDASGFRIPQQEATNKAQSQGALLKIRLVMSAPIDETF 111

Query: 409 DTNFTSGSTSKDNDVNHILRQ 347
           DTN T+  T    D+N I+ +
Sbjct: 112 DTNETATITYFSTDLNKIVEK 132



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>TEAD4_CHICK (P48984) Transcriptional enhancer factor TEF-3 (TEA domain family|
           member 4) (TEAD-4) (TEF-1) (M-CAT-binding factor)
           (RTEF-1)
          Length = 438

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 19/86 (22%), Positives = 33/86 (38%)
 Frame = -1

Query: 496 QIGQQKNACARVAVRKIRRNKTTQQDQQVDTNFTSGSTSKDNDVNHILRQDMLMIVLVTQ 317
           Q+       AR   R+I+      Q  + D +     T+KD  +  I       I+  T 
Sbjct: 89  QVSSHIQVLARRKAREIQAKLKKTQVDKYDFSSEKDQTAKDKAMQSIATMSSAQIISATA 148

Query: 316 *HSQSMIANRQTSVIGALTVIWKESL 239
            HS+  +     S   A++  W+ +L
Sbjct: 149 FHSKMALPGLPRSAYPAVSGFWQGAL 174


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,674,281
Number of Sequences: 219361
Number of extensions: 1388447
Number of successful extensions: 4125
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4062
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4125
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5653129581
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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