ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd25i06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK099760.1| Oryza sativa (japonica cultivar-group) cDNA clon... 274 3e-70
2gb|BT024059.1| Zea mays clone EL01N0440H03 mRNA sequence 103 6e-19
3gb|AC120984.3| Oryza sativa (japonica cultivar-group) chromosome... 100 1e-17
4gb|AC120887.2| Oryza sativa (japonica cultivar-group) chromosome... 100 1e-17
5dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 100 1e-17
6gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 100 1e-17
7gb|BT018746.1| Zea mays clone EL01N0521H09.d mRNA sequence 84 6e-13
8gb|BC032041.1| Homo sapiens cDNA clone IMAGE:4824089 42 2.0
9gb|BC034578.1| Homo sapiens cDNA clone IMAGE:4824090 42 2.0
10gb|AC154225.2| Mus musculus BAC clone RP24-352F3 from chromosome... 42 2.0
11gb|AC006557.2|AC006557 Homo sapiens chromosome 18, clone hRPK.41... 42 2.0
12dbj|AP003480.1| Homo sapiens genomic DNA, chromosome 8q23, clone... 42 2.0
13dbj|AP001004.5| Homo sapiens genomic DNA, chromosome 18 clone:RP... 42 2.0
14gb|AY769950.1| Homo sapiens coagulation factor VIII, procoagulan... 40 8.1
15ref|NG_005114.1| Homo sapiens coagulation factor VIII region (F8... 40 8.1
16emb|CT025637.1| Pan troglodytes chromosome X clone PTB-011B24 ma... 40 8.1
17emb|BX842564.3| Human DNA sequence from clone CTD-2037E7 on chro... 40 8.1
18emb|AL590131.8| Human DNA sequence from clone RP13-102H20 on chr... 40 8.1
19emb|AL451073.17| Human DNA sequence from clone RP11-384A24 on ch... 40 8.1
20emb|AL357045.10| Human DNA sequence from clone RP4-794L19 on chr... 40 8.1
21emb|AL138963.20| Human DNA sequence from clone RP11-290D2 on chr... 40 8.1
22emb|CR628337.1| Legionella pneumophila str. Lens complete genome 40 8.1
23emb|CR628336.1| Legionella pneumophila str. Paris complete genome 40 8.1
24gb|AC073175.4| Homo sapiens chromosome 05 clone RP11-319P13, com... 40 8.1
25gb|AC163771.5| Pan troglodytes BAC clone CH251-57G17 from chromo... 40 8.1
26gb|AC116611.4| Homo sapiens BAC clone RP13-581D7 from 4, complet... 40 8.1
27gb|AC154541.2| Mus musculus BAC clone RP23-458N20 from chromosom... 40 8.1
28gb|AC140379.3| Mus musculus BAC clone RP24-215M3 from chromosome... 40 8.1
29gb|AC010227.5|AC010227 Homo sapiens chromosome 5 clone CTC-289C9... 40 8.1
30gb|AC008893.4|AC008893 Homo sapiens chromosome 5 clone CTD-2228J... 40 8.1
31emb|AL391748.3|CNS06C8H Human chromosome 14 DNA sequence BAC R-6... 40 8.1
32emb|AL645722.2|HSA524G17 Homo sapiens chromosome X clone RP11-52... 40 8.1 
>dbj|AK099760.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013093M02, full
            insert sequence
          Length = 1617

 Score =  274 bits (138), Expect = 3e-70
 Identities = 294/346 (84%)
 Strand = Plus / Minus

                                                                        
Query: 243  ctaagagatcttctttgtgctgcatatagtaatataccaaaattgcgagaataatagcta 302
            |||||||||| ||||| |||||||||||||| ||| |||||||||| ||||||||| | |
Sbjct: 1243 ctaagagatcctctttatgctgcatatagtagtatgccaaaattgcaagaataataacca 1184

                                                                        
Query: 303  gtatcatggaccagaggcttataccatcgctcttgggtgattcagtcgatgtcacccttg 362
            ||||||||| ||| |  |||||||||   ||||| |||||| || | || |||||||| |
Sbjct: 1183 gtatcatggtccatatacttataccacgactcttaggtgatccaattgaagtcaccctag 1124

                                                                        
Query: 363  cggttgagtcaaaggaagtcgacagcaaggcccttgaatcttgagaaaacgctaatgtag 422
            | || || || ||||||||||||||||||| ||||||||||||||| || || |||||||
Sbjct: 1123 cagtagaatcgaaggaagtcgacagcaaggtccttgaatcttgagagaatgccaatgtag 1064

                                                                        
Query: 423  taacaatgccaagatgtgcctttttaactgttacaaccactcgcatgtctcttgaaccaa 482
            ||| |||||||||||||||||||||||||||||||| |   ||||| | | ||||||  |
Sbjct: 1063 taataatgccaagatgtgcctttttaactgttacaagcgaccgcatattttttgaactta 1004

                                                                        
Query: 483  gaacactgatgcttccctcaatagttccaattgctaaaagtgtaccatcaggcgagacag 542
            | ||| | |||||||| ||||||||||||||||| | |||||||| ||||||||||||||
Sbjct: 1003 gtacaataatgcttccttcaatagttccaattgcaagaagtgtacaatcaggcgagacag 944

                                                          
Query: 543  aaaaagctgaaattgcatcacgagttactttctttgatccaattct 588
             ||| ||||||||||| ||||| |||| ||| ||||| ||||||||
Sbjct: 943  caaatgctgaaattgcctcacgtgttattttatttgacccaattct 898
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>gb|BT024059.1| Zea mays clone EL01N0440H03 mRNA sequence
          Length = 1989

 Score =  103 bits (52), Expect = 6e-19
 Identities = 169/208 (81%)
 Strand = Plus / Minus

                                                                        
Query: 251  tcttctttgtgctgcatatagtaatataccaaaattgcgagaataatagctagtatcatg 310
            ||||||||||||||| || |||| || ||||||||||| ||||||| | |||||| ||||
Sbjct: 1519 tcttctttgtgctgcgtacagtagtacaccaaaattgcaagaataacaactagtagcatg 1460

                                                                        
Query: 311  gaccagaggcttataccatcgctcttgggtgattcagtcgatgtcacccttgcggttgag 370
            | ||| | |||| | ||||  ||||| || ||  ||   |||||||||||||| |  |||
Sbjct: 1459 ggccatatgcttgttccattactctttggagacccaacagatgtcacccttgcagaagag 1400

                                                                        
Query: 371  tcaaaggaagtcgacagcaaggcccttgaatcttgagaaaacgctaatgtagtaacaatg 430
            || |||||||| |||||||| |  |||||||| ||||| || |  |  ||||||||||| 
Sbjct: 1399 tcgaaggaagttgacagcaatgttcttgaatcctgagagaaggtcagcgtagtaacaata 1340

                                        
Query: 431  ccaagatgtgcctttttaactgttacaa 458
            |||||||| |||||||||||||||||||
Sbjct: 1339 ccaagatgagcctttttaactgttacaa 1312



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 36/39 (92%), Gaps = 1/39 (2%)
 Strand = Plus / Minus

                                                  
Query: 545 aaagctgaaattgcatcac-gagttactttctttgatcc 582
           |||||||||||||| |||| |||||| ||||||||||||
Sbjct: 620 aaagctgaaattgcctcacggagttattttctttgatcc 582
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>gb|AC120984.3| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
              OSJNBb0026G02, complete sequence
          Length = 123472

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 101/118 (85%)
 Strand = Plus / Plus

                                                                          
Query: 394    ccttgaatcttgagaaaacgctaatgtagtaacaatgccaagatgtgcctttttaactgt 453
              ||||||||||||||| || || |||||||||| |||||||||||||||||||||||||||
Sbjct: 122541 ccttgaatcttgagagaatgccaatgtagtaataatgccaagatgtgcctttttaactgt 122600

                                                                        
Query: 454    tacaaccactcgcatgtctcttgaaccaagaacactgatgcttccctcaatagttcca 511
              ||||| |   ||||| | | ||||||  || ||| | |||||||| ||||||||||||
Sbjct: 122601 tacaagcgaccgcatattttttgaacttagtacaataatgcttccttcaatagttcca 122658



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 62/69 (89%)
 Strand = Plus / Plus

                                                                          
Query: 243    ctaagagatcttctttgtgctgcatatagtaatataccaaaattgcgagaataatagcta 302
              |||||||||| ||||| |||||||||||||| ||| |||||||||| ||||||||| | |
Sbjct: 122214 ctaagagatcctctttatgctgcatatagtagtatgccaaaattgcaagaataataacca 122273

                       
Query: 303    gtatcatgg 311
              |||||||||
Sbjct: 122274 gtatcatgg 122282



 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 61/69 (88%)
 Strand = Plus / Plus

                                                                          
Query: 520    aagtgtaccatcaggcgagacagaaaaagctgaaattgcatcacgagttactttctttga 579
              |||||||| |||||||||||||| ||| ||||||||||| ||||| |||| ||| |||||
Sbjct: 122772 aagtgtacaatcaggcgagacagcaaatgctgaaattgcctcacgtgttattttatttga 122831

                       
Query: 580    tccaattct 588
               ||||||||
Sbjct: 122832 cccaattct 122840



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 51/61 (83%)
 Strand = Plus / Plus

                                                                          
Query: 332    ctcttgggtgattcagtcgatgtcacccttgcggttgagtcaaaggaagtcgacagcaag 391
              ||||| |||||| || | || |||||||| || || || || ||||||||||||||||||
Sbjct: 122387 ctcttaggtgatccaattgaagtcaccctagcagtagaatcgaaggaagtcgacagcaag 122446

               
Query: 392    g 392
              |
Sbjct: 122447 g 122447
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>gb|AC120887.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0088K21, complete sequence
          Length = 153239

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 101/118 (85%)
 Strand = Plus / Plus

                                                                         
Query: 394   ccttgaatcttgagaaaacgctaatgtagtaacaatgccaagatgtgcctttttaactgt 453
             ||||||||||||||| || || |||||||||| |||||||||||||||||||||||||||
Sbjct: 21458 ccttgaatcttgagagaatgccaatgtagtaataatgccaagatgtgcctttttaactgt 21517

                                                                       
Query: 454   tacaaccactcgcatgtctcttgaaccaagaacactgatgcttccctcaatagttcca 511
             ||||| |   ||||| | | ||||||  || ||| | |||||||| ||||||||||||
Sbjct: 21518 tacaagcgaccgcatattttttgaacttagtacaataatgcttccttcaatagttcca 21575



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 62/69 (89%)
 Strand = Plus / Plus

                                                                         
Query: 243   ctaagagatcttctttgtgctgcatatagtaatataccaaaattgcgagaataatagcta 302
             |||||||||| ||||| |||||||||||||| ||| |||||||||| ||||||||| | |
Sbjct: 21131 ctaagagatcctctttatgctgcatatagtagtatgccaaaattgcaagaataataacca 21190

                      
Query: 303   gtatcatgg 311
             |||||||||
Sbjct: 21191 gtatcatgg 21199



 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 61/69 (88%)
 Strand = Plus / Plus

                                                                         
Query: 520   aagtgtaccatcaggcgagacagaaaaagctgaaattgcatcacgagttactttctttga 579
             |||||||| |||||||||||||| ||| ||||||||||| ||||| |||| ||| |||||
Sbjct: 21689 aagtgtacaatcaggcgagacagcaaatgctgaaattgcctcacgtgttattttatttga 21748

                      
Query: 580   tccaattct 588
              ||||||||
Sbjct: 21749 cccaattct 21757



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 51/61 (83%)
 Strand = Plus / Plus

                                                                         
Query: 332   ctcttgggtgattcagtcgatgtcacccttgcggttgagtcaaaggaagtcgacagcaag 391
             ||||| |||||| || | || |||||||| || || || || ||||||||||||||||||
Sbjct: 21304 ctcttaggtgatccaattgaagtcaccctagcagtagaatcgaaggaagtcgacagcaag 21363

              
Query: 392   g 392
             |
Sbjct: 21364 g 21364
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 101/118 (85%)
 Strand = Plus / Plus

                                                                            
Query: 394      ccttgaatcttgagaaaacgctaatgtagtaacaatgccaagatgtgcctttttaactgt 453
                ||||||||||||||| || || |||||||||| |||||||||||||||||||||||||||
Sbjct: 22761741 ccttgaatcttgagagaatgccaatgtagtaataatgccaagatgtgcctttttaactgt 22761800

                                                                          
Query: 454      tacaaccactcgcatgtctcttgaaccaagaacactgatgcttccctcaatagttcca 511
                ||||| |   ||||| | | ||||||  || ||| | |||||||| ||||||||||||
Sbjct: 22761801 tacaagcgaccgcatattttttgaacttagtacaataatgcttccttcaatagttcca 22761858



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 62/69 (89%)
 Strand = Plus / Plus

                                                                            
Query: 243      ctaagagatcttctttgtgctgcatatagtaatataccaaaattgcgagaataatagcta 302
                |||||||||| ||||| |||||||||||||| ||| |||||||||| ||||||||| | |
Sbjct: 22761414 ctaagagatcctctttatgctgcatatagtagtatgccaaaattgcaagaataataacca 22761473

                         
Query: 303      gtatcatgg 311
                |||||||||
Sbjct: 22761474 gtatcatgg 22761482



 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 61/69 (88%)
 Strand = Plus / Plus

                                                                            
Query: 520      aagtgtaccatcaggcgagacagaaaaagctgaaattgcatcacgagttactttctttga 579
                |||||||| |||||||||||||| ||| ||||||||||| ||||| |||| ||| |||||
Sbjct: 22761972 aagtgtacaatcaggcgagacagcaaatgctgaaattgcctcacgtgttattttatttga 22762031

                         
Query: 580      tccaattct 588
                 ||||||||
Sbjct: 22762032 cccaattct 22762040



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 51/61 (83%)
 Strand = Plus / Plus

                                                                            
Query: 332      ctcttgggtgattcagtcgatgtcacccttgcggttgagtcaaaggaagtcgacagcaag 391
                ||||| |||||| || | || |||||||| || || || || ||||||||||||||||||
Sbjct: 22761587 ctcttaggtgatccaattgaagtcaccctagcagtagaatcgaaggaagtcgacagcaag 22761646

                 
Query: 392      g 392
                |
Sbjct: 22761647 g 22761647
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 101/118 (85%)
 Strand = Plus / Plus

                                                                            
Query: 394      ccttgaatcttgagaaaacgctaatgtagtaacaatgccaagatgtgcctttttaactgt 453
                ||||||||||||||| || || |||||||||| |||||||||||||||||||||||||||
Sbjct: 23071651 ccttgaatcttgagagaatgccaatgtagtaataatgccaagatgtgcctttttaactgt 23071710

                                                                          
Query: 454      tacaaccactcgcatgtctcttgaaccaagaacactgatgcttccctcaatagttcca 511
                ||||| |   ||||| | | ||||||  || ||| | |||||||| ||||||||||||
Sbjct: 23071711 tacaagcgaccgcatattttttgaacttagtacaataatgcttccttcaatagttcca 23071768



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 62/69 (89%)
 Strand = Plus / Plus

                                                                            
Query: 243      ctaagagatcttctttgtgctgcatatagtaatataccaaaattgcgagaataatagcta 302
                |||||||||| ||||| |||||||||||||| ||| |||||||||| ||||||||| | |
Sbjct: 23071324 ctaagagatcctctttatgctgcatatagtagtatgccaaaattgcaagaataataacca 23071383

                         
Query: 303      gtatcatgg 311
                |||||||||
Sbjct: 23071384 gtatcatgg 23071392



 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 61/69 (88%)
 Strand = Plus / Plus

                                                                            
Query: 520      aagtgtaccatcaggcgagacagaaaaagctgaaattgcatcacgagttactttctttga 579
                |||||||| |||||||||||||| ||| ||||||||||| ||||| |||| ||| |||||
Sbjct: 23071882 aagtgtacaatcaggcgagacagcaaatgctgaaattgcctcacgtgttattttatttga 23071941

                         
Query: 580      tccaattct 588
                 ||||||||
Sbjct: 23071942 cccaattct 23071950



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 51/61 (83%)
 Strand = Plus / Plus

                                                                            
Query: 332      ctcttgggtgattcagtcgatgtcacccttgcggttgagtcaaaggaagtcgacagcaag 391
                ||||| |||||| || | || |||||||| || || || || ||||||||||||||||||
Sbjct: 23071497 ctcttaggtgatccaattgaagtcaccctagcagtagaatcgaaggaagtcgacagcaag 23071556

                 
Query: 392      g 392
                |
Sbjct: 23071557 g 23071557
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>gb|BT018746.1| Zea mays clone EL01N0521H09.d mRNA sequence
          Length = 1619

 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 90/106 (84%)
 Strand = Plus / Minus

                                                                        
Query: 353  gtcacccttgcggttgagtcaaaggaagtcgacagcaaggcccttgaatcttgagaaaac 412
            ||||||||||| || |||||||||||||| |||||||| |  |||||||| ||||| || 
Sbjct: 1199 gtcacccttgcagtagagtcaaaggaagttgacagcaatgttcttgaatcctgagagaag 1140

                                                          
Query: 413  gctaatgtagtaacaatgccaagatgtgcctttttaactgttacaa 458
            |  | |||||| ||||  |||||||| |||||||||||||||||||
Sbjct: 1139 gacagtgtagtcacaacaccaagatgggcctttttaactgttacaa 1094



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                   
Query: 544  aaaagctgaaattgcatcacgagttactttctttgatcc 582
            ||||||||||||||| |||||||||| ||||||||||||
Sbjct: 1008 aaaagctgaaattgcctcacgagttattttctttgatcc 970



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 48/55 (87%)
 Strand = Plus / Minus

                                                                   
Query: 251  tcttctttgtgctgcatatagtaatataccaaaattgcgagaataatagctagta 305
            |||||||||||||||||| |||| || || |||| ||| ||||| ||||||||||
Sbjct: 1301 tcttctttgtgctgcatacagtagtacactaaaactgcaagaatgatagctagta 1247
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>gb|BC032041.1| Homo sapiens cDNA clone IMAGE:4824089
          Length = 1099

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 472 tcttgaaccaagaacactgatgcttccctcaat 504
           |||||||||||||| |||||| ||||| |||||
Sbjct: 460 tcttgaaccaagaaaactgattcttccatcaat 428
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>gb|BC034578.1| Homo sapiens cDNA clone IMAGE:4824090
          Length = 1099

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 472 tcttgaaccaagaacactgatgcttccctcaat 504
           |||||||||||||| |||||| ||||| |||||
Sbjct: 460 tcttgaaccaagaaaactgattcttccatcaat 428
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>gb|AC154225.2| Mus musculus BAC clone RP24-352F3 from chromosome 13, complete sequence
          Length = 157586

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 58    agtgtgacatgatagaaaaaa 78
             |||||||||||||||||||||
Sbjct: 66365 agtgtgacatgatagaaaaaa 66385
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>gb|AC006557.2|AC006557 Homo sapiens chromosome 18, clone hRPK.411_B_10, complete sequence
          Length = 154589

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                              
Query: 472   tcttgaaccaagaacactgatgcttccctcaat 504
             |||||||||||||| |||||| ||||| |||||
Sbjct: 62944 tcttgaaccaagaaaactgattcttccatcaat 62976
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>dbj|AP003480.1| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1970H2
          Length = 150331

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 100   gtttttctttcacctaaatacaaaa 124
             |||||||||||||||||| ||||||
Sbjct: 50916 gtttttctttcacctaaagacaaaa 50892
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>dbj|AP001004.5| Homo sapiens genomic DNA, chromosome 18 clone:RP11-681B3, complete
             sequence
          Length = 182424

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                              
Query: 472   tcttgaaccaagaacactgatgcttccctcaat 504
             |||||||||||||| |||||| ||||| |||||
Sbjct: 28084 tcttgaaccaagaaaactgattcttccatcaat 28052
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>gb|AY769950.1| Homo sapiens coagulation factor VIII, procoagulant component
             (hemophilia A) (F8) gene, complete cds
          Length = 192029

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 217   acaaaattatcattgtggca 236
             ||||||||||||||||||||
Sbjct: 54490 acaaaattatcattgtggca 54509
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>ref|NG_005114.1| Homo sapiens coagulation factor VIII region (F8@) on chromosome X
          Length = 652898

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 217    acaaaattatcattgtggca 236
              ||||||||||||||||||||
Sbjct: 136053 acaaaattatcattgtggca 136034
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>emb|CT025637.1| Pan troglodytes chromosome X clone PTB-011B24 map Xq28, complete sequence
          Length = 261577

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 217    acaaaattatcattgtggca 236
              ||||||||||||||||||||
Sbjct: 249667 acaaaattatcattgtggca 249648
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>emb|BX842564.3| Human DNA sequence from clone CTD-2037E7 on chromosome X Contains part
             of the F8 gene for coagulation factor VIII, procoagulant
             component (hemophilia A), complete sequence
          Length = 71989

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 217   acaaaattatcattgtggca 236
             ||||||||||||||||||||
Sbjct: 23148 acaaaattatcattgtggca 23129
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>emb|AL590131.8| Human DNA sequence from clone RP13-102H20 on chromosome X Contains gene
             FLJ30058, the 5' end of a novel gene and four CpG islands,
             complete sequence
          Length = 146343

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 115   aaatacaaaaaattgctcta 134
             ||||||||||||||||||||
Sbjct: 74694 aaatacaaaaaattgctcta 74675
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>emb|AL451073.17| Human DNA sequence from clone RP11-384A24 on chromosome 6 Contains part
              of the PTPRK gene for protein tyrosine phosphatase receptor
              type K (R-PTP-KAPPA), complete sequence
          Length = 121208

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 47     cattttataccagtgtgaca 66
              ||||||||||||||||||||
Sbjct: 110709 cattttataccagtgtgaca 110728
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>emb|AL357045.10| Human DNA sequence from clone RP4-794L19 on chromosome 1 Contains the 3'
              end of the TBX15 gene for T-box 15, complete sequence
          Length = 141277

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 183    gagaggtaagcagtgaaata 202
              ||||||||||||||||||||
Sbjct: 101129 gagaggtaagcagtgaaata 101148
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>emb|AL138963.20| Human DNA sequence from clone RP11-290D2 on chromosome 13 Contains the 3'
              end of the GTF2F2 gene for general transcription factor
              IIF, polypeptide 2, 30kDa, 3 novel genes, the TPT1 gene for
              tumor protein, translationally-controlled 1 and a CpG
              island, complete sequence
          Length = 161297

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 435    gatgtgcctttttaactgtt 454
              ||||||||||||||||||||
Sbjct: 101756 gatgtgcctttttaactgtt 101737
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>emb|CR628337.1| Legionella pneumophila str. Lens complete genome
          Length = 3345687

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 444     ttttaactgttacaaccact 463
               ||||||||||||||||||||
Sbjct: 2543985 ttttaactgttacaaccact 2544004
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>emb|CR628336.1| Legionella pneumophila str. Paris complete genome
          Length = 3503610

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 444     ttttaactgttacaaccact 463
               ||||||||||||||||||||
Sbjct: 2594465 ttttaactgttacaaccact 2594484
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>gb|AC073175.4| Homo sapiens chromosome 05 clone RP11-319P13, complete sequence
          Length = 173707

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 211    ggctgaacaaaattatcatt 230
              ||||||||||||||||||||
Sbjct: 103881 ggctgaacaaaattatcatt 103862
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>gb|AC163771.5| Pan troglodytes BAC clone CH251-57G17 from chromosome unknown, complete
             sequence
          Length = 179603

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 217   acaaaattatcattgtggca 236
             ||||||||||||||||||||
Sbjct: 22620 acaaaattatcattgtggca 22639
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>gb|AC116611.4| Homo sapiens BAC clone RP13-581D7 from 4, complete sequence
          Length = 165959

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 115   aaatacaaaaaattgctcta 134
             ||||||||||||||||||||
Sbjct: 14069 aaatacaaaaaattgctcta 14050
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>gb|AC154541.2| Mus musculus BAC clone RP23-458N20 from chromosome 13, complete sequence
          Length = 174991

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 253    ttctttgtgctgcatatagt 272
              ||||||||||||||||||||
Sbjct: 144922 ttctttgtgctgcatatagt 144941
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>gb|AC140379.3| Mus musculus BAC clone RP24-215M3 from chromosome 10, complete sequence
          Length = 141034

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 104   ttctttcacctaaatacaaaaaattgct 131
             ||||||||| |||| |||||||||||||
Sbjct: 12699 ttctttcacttaaaaacaaaaaattgct 12672
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>gb|AC010227.5|AC010227 Homo sapiens chromosome 5 clone CTC-289C9, complete sequence
          Length = 106320

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 211   ggctgaacaaaattatcatt 230
             ||||||||||||||||||||
Sbjct: 70345 ggctgaacaaaattatcatt 70326
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>gb|AC008893.4|AC008893 Homo sapiens chromosome 5 clone CTD-2228J24, complete sequence
          Length = 94995

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 211  ggctgaacaaaattatcatt 230
            ||||||||||||||||||||
Sbjct: 8226 ggctgaacaaaattatcatt 8245
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>emb|AL391748.3|CNS06C8H Human chromosome 14 DNA sequence BAC R-630G18 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 170915

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 505   agttccaattgctaaaagtg 524
             ||||||||||||||||||||
Sbjct: 74322 agttccaattgctaaaagtg 74341
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>emb|AL645722.2|HSA524G17 Homo sapiens chromosome X clone RP11-524G17 map Xq28, complete sequence
          Length = 189940

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 217   acaaaattatcattgtggca 236
             ||||||||||||||||||||
Sbjct: 70866 acaaaattatcattgtggca 70885


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,383,680
Number of Sequences: 3902068
Number of extensions: 6383680
Number of successful extensions: 262599
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 262306
Number of HSP's gapped (non-prelim): 291
length of query: 595
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 572
effective length of database: 17,143,297,704
effective search space: 9805966286688
effective search space used: 9805966286688
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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