>PSBR_SPIOL (P10690) Photosystem II 10 kDa polypeptide, chloroplast precursor|
          Length = 140

 Score =  123 bits (308), Expect = 1e-28
 Identities = 61/90 (67%), Positives = 69/90 (76%), Gaps = 2/90 (2%)
 Frame = -2

Query: 404 DKPLGLGGGLTV--DIDANGRKVGKKGVYQFVDKYGANVDGYSPIYTPEEWSESGDRYAG 231
           DKPLG+GGG+ +   +D++GRK   KGVYQFVDKYGANVDGYSPIY  EEW+ +GD YAG
Sbjct: 50  DKPLGIGGGMKLRDGVDSSGRKPTGKGVYQFVDKYGANVDGYSPIYNEEEWAPTGDVYAG 109

Query: 230 GTTGLLIWAVTXXXXXXXXXXLVYNTSALA 141
           GTTGLLIWAVT          LVYNTSALA
Sbjct: 110 GTTGLLIWAVTLAGLLAGGALLVYNTSALA 139

>PSBR_SOLTU (P06183) Photosystem II 10 kDa polypeptide, chloroplast precursor|
           (Light-inducible tissue-specific ST-LS1 protein)
          Length = 138

 Score =  114 bits (285), Expect = 6e-26
 Identities = 57/90 (63%), Positives = 64/90 (71%), Gaps = 2/90 (2%)
 Frame = -2

Query: 404 DKPLGLGGGLTV--DIDANGRKVGKKGVYQFVDKYGANVDGYSPIYTPEEWSESGDRYAG 231
           DKP G+ G + +   +DA+GRK   KGVYQ+VDKYGANVDGYSPIY  +EWS SGD Y G
Sbjct: 48  DKPYGINGSMALRDGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVG 107

Query: 230 GTTGLLIWAVTXXXXXXXXXXLVYNTSALA 141
           GTTGL IWAVT          LVYNTSALA
Sbjct: 108 GTTGLAIWAVTLVGILAGGALLVYNTSALA 137

>PSBR_LYCES (Q40163) Photosystem II 10 kDa polypeptide, chloroplast precursor|
          Length = 138

 Score =  114 bits (285), Expect = 6e-26
 Identities = 57/90 (63%), Positives = 64/90 (71%), Gaps = 2/90 (2%)
 Frame = -2

Query: 404 DKPLGLGGGLTV--DIDANGRKVGKKGVYQFVDKYGANVDGYSPIYTPEEWSESGDRYAG 231
           DKP G+ G + +   +DA+GRK   KGVYQ+VDKYGANVDGYSPIY  +EWS SGD Y G
Sbjct: 48  DKPYGINGSMALRDGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVG 107

Query: 230 GTTGLLIWAVTXXXXXXXXXXLVYNTSALA 141
           GTTGL IWAVT          LVYNTSALA
Sbjct: 108 GTTGLAIWAVTLLGILAGGALLVYNTSALA 137

>PSBR_TOBAC (Q40519) Photosystem II 10 kDa polypeptide, chloroplast precursor|
           (PII10)
          Length = 136

 Score =  113 bits (282), Expect = 1e-25
 Identities = 56/90 (62%), Positives = 65/90 (72%), Gaps = 2/90 (2%)
 Frame = -2

Query: 404 DKPLGLGGGLTV--DIDANGRKVGKKGVYQFVDKYGANVDGYSPIYTPEEWSESGDRYAG 231
           DKP G+ G +++   +DA+GRK   KGVYQFVDKYGANVDGYSPIY  ++WS SGD Y G
Sbjct: 46  DKPYGINGSMSLRDGVDASGRKQKGKGVYQFVDKYGANVDGYSPIYNTDDWSPSGDVYVG 105

Query: 230 GTTGLLIWAVTXXXXXXXXXXLVYNTSALA 141
           GTTGL IWAVT          LV+NTSALA
Sbjct: 106 GTTGLAIWAVTLVGILAGGALLVFNTSALA 135

>PSBR_HORVU (Q40070) Photosystem II 10 kDa polypeptide, chloroplast precursor|
          Length = 138

 Score =  111 bits (277), Expect = 5e-25
 Identities = 56/89 (62%), Positives = 62/89 (69%), Gaps = 2/89 (2%)
 Frame = -2

Query: 401 KPLGLGGGLTVD--IDANGRKVGKKGVYQFVDKYGANVDGYSPIYTPEEWSESGDRYAGG 228
           +P G GGG+     +DA+GR    KGVYQF DKYGANVDGYSPIYTPEEWS SGD Y GG
Sbjct: 49  QPYGPGGGVAFKEGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVYVGG 108

Query: 227 TTGLLIWAVTXXXXXXXXXXLVYNTSALA 141
            TGL +WAVT          LVY+TSALA
Sbjct: 109 KTGLFLWAVTLAGILLGGALLVYSTSALA 137

>PSBR_BRACM (P49108) Photosystem II 10 kDa polypeptide, chloroplast precursor|
          Length = 141

 Score =  108 bits (270), Expect = 3e-24
 Identities = 55/90 (61%), Positives = 62/90 (68%), Gaps = 2/90 (2%)
 Frame = -2

Query: 404 DKPLGLGGGLTV--DIDANGRKVGKKGVYQFVDKYGANVDGYSPIYTPEEWSESGDRYAG 231
           DKP G+ G + +   +DA+GRK    GVY+FVDKYGANVDGYSPIY  +EWS SGD Y G
Sbjct: 51  DKPFGVNGSMDLRDGVDASGRKGKGYGVYKFVDKYGANVDGYSPIYNEDEWSASGDVYKG 110

Query: 230 GTTGLLIWAVTXXXXXXXXXXLVYNTSALA 141
           G TGL IWAVT          LVYNTSALA
Sbjct: 111 GVTGLAIWAVTLAGILAGGALLVYNTSALA 140

>PSBR_ARATH (P27202) Photosystem II 10 kDa polypeptide, chloroplast precursor|
          Length = 140

 Score =  107 bits (266), Expect = 9e-24
 Identities = 54/90 (60%), Positives = 61/90 (67%), Gaps = 2/90 (2%)
 Frame = -2

Query: 404 DKPLGLGGGLTV--DIDANGRKVGKKGVYQFVDKYGANVDGYSPIYTPEEWSESGDRYAG 231
           DKP G+ G + +   +DA+GRK    GVY++VDKYGANVDGYSPIY   EWS SGD Y G
Sbjct: 50  DKPFGINGSMDLRDGVDASGRKGKGYGVYKYVDKYGANVDGYSPIYNENEWSASGDVYKG 109

Query: 230 GTTGLLIWAVTXXXXXXXXXXLVYNTSALA 141
           G TGL IWAVT          LVYNTSALA
Sbjct: 110 GVTGLAIWAVTLAGILAGGALLVYNTSALA 139

>PSBR_WHEAT (P12358) Photosystem II 10 kDa polypeptide (Fragment)|
          Length = 24

 Score = 36.6 bits (83), Expect = 0.015
 Identities = 16/16 (100%), Positives = 16/16 (100%)
 Frame = -2

Query: 404 DKPLGLGGGLTVDIDA 357
           DKPLGLGGGLTVDIDA
Sbjct: 9   DKPLGLGGGLTVDIDA 24

>VAP1_STRPU (Q06155) Vesicle-associated protein (VAP-1) (Fragment)|
          Length = 433

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 19/38 (50%), Positives = 21/38 (55%)
 Frame = -2

Query: 392 GLGGGLTVDIDANGRKVGKKGVYQFVDKYGANVDGYSP 279
           GLGGGL  DIDANG  V  KG     D  G ++D   P
Sbjct: 225 GLGGGL--DIDANGPDVDIKGPKVGGDISGPDLDVSGP 260



 Score = 28.9 bits (63), Expect = 3.1
 Identities = 19/38 (50%), Positives = 21/38 (55%)
 Frame = -2

Query: 392 GLGGGLTVDIDANGRKVGKKGVYQFVDKYGANVDGYSP 279
           GLGGGL  DIDANG  V  KG     D  G ++D   P
Sbjct: 118 GLGGGL--DIDANGPDVDIKGPKVGGDISGPDLDVSGP 153

>GATB_ARCFU (O28164) Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B|
           (EC 6.3.5.-) (Asp/Glu-ADT subunit B)
          Length = 471

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -2

Query: 404 DKPLGLGGGLTVDIDANGRKVGKKGVYQFVD 312
           D+PL LGG +T+++D   +++  K V+   D
Sbjct: 97  DRPLALGGYVTIELDGQEKRIQLKRVHMEED 127

>TOR1_YEAST (P35169) Phosphatidylinositol 3-kinase TOR1 (EC 2.7.1.137)|
            (PtdIns-3-kinase TOR1) (PI3-kinase TOR1) (PI3K TOR1)
          Length = 2470

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = -2

Query: 362  DANGRKVGKKGVYQFVDKYGANVDGYSPIYTPE 264
            D +  KV  + V + ++ +G N++GYS + TP+
Sbjct: 1046 DKSSDKVLSRRVLRLLESFGPNLEGYSHLITPK 1078

>DYH5_HUMAN (Q8TE73) Ciliary dynein heavy chain 5 (Axonemal beta dynein heavy|
           chain 5) (HL1)
          Length = 4624

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -2

Query: 326 YQFV-DKYGANVDGYSPIYTPEEWSESGDRYAGGTTGLLIWA 204
           YQ + + YGA++D  S +YT +++     R      G ++WA
Sbjct: 589 YQLILENYGADIDMISKLYTKQKYDPPLARNQPPIAGKILWA 630

>SYE_MYCH2 (Q601G1) Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA|
           ligase) (GluRS)
          Length = 467

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
 Frame = -2

Query: 383 GGLTVDIDANGRKVGK--KGVYQFVDKY 306
           G LT+  D NG+K+ K  K ++QF++ Y
Sbjct: 238 GHLTIITDKNGKKLSKRDKSLFQFIEDY 265

>TRA6_BACST (Q45618) Putative transposase for insertion sequence element IS5376|
          Length = 400

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +3

Query: 63  DIHAHYSYVDYRVETRPVLQVDAFLAGES 149
           ++ A  S V   V+TRP+   DAFL GES
Sbjct: 371 EMAATISPVSVEVDTRPLSVYDAFLRGES 399

>KNH1_CANGA (O74684) Cell wall synthesis protein KNH1 precursor|
          Length = 265

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -2

Query: 374 TVDIDAN-GRKVGKKGVYQFVDKYGANVDGYSPIYTP 267
           T D +A   + VG  G Y +V  Y A  DGY+  Y+P
Sbjct: 81  TTDFEAEVSQSVGANGYY-YVQIYAATTDGYTIHYSP 116

>MUC2_HUMAN (Q02817) Mucin-2 precursor (Intestinal mucin 2)|
          Length = 5179

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 7/44 (15%)
 Frame = +1

Query: 289  PSTLAPYLSTNW*TPF-------LPTFLPLASMSTVKPPPSPRG 399
            P T  P  +T   TP         PT  P+ + +TV P P+P G
Sbjct: 1895 PPTTTPITTTTTVTPTPTPTGTQTPTTTPITTTTTVTPTPTPTG 1938


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,842,394
Number of Sequences: 219361
Number of extensions: 645088
Number of successful extensions: 2164
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 2010
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2163
length of database: 80,573,946
effective HSP length: 110
effective length of database: 56,444,236
effective search space used: 1354661664
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)