Clone Information

BLAST Search Result

Clone Name	rbasd25h20
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ECR1_PYRAE (Q8ZVM8) Probable exosome complex RNA-binding protein 1	36	0.049
2	PCBP1_RABIT (O19048) Poly(rC)-binding protein 1 (Alpha-CP1) (hnR...	36	0.064
3	PCBP1_MOUSE (P60335) Poly(rC)-binding protein 1 (Alpha-CP1) (hnR...	36	0.064
4	PCBP1_HUMAN (Q15365) Poly(rC)-binding protein 1 (Alpha-CP1) (hnR...	36	0.064
5	FUBP2_RAT (Q99PF5) Far upstream element-binding protein 2 (FUSE-...	35	0.084
6	PCBP2_MOUSE (Q61990) Poly(rC)-binding protein 2 (Alpha-CP2) (Put...	35	0.11
7	PCBP2_HUMAN (Q15366) Poly(rC)-binding protein 2 (Alpha-CP2) (hnR...	35	0.11
8	FUBP2_HUMAN (Q92945) Far upstream element-binding protein 2 (FUS...	35	0.14
9	PCBP3_MOUSE (P57722) Poly(rC)-binding protein 3 (Alpha-CP3)	34	0.24
10	PCBP3_HUMAN (P57721) Poly(rC)-binding protein 3 (Alpha-CP3)	34	0.24
11	ECR1_METTH (O26780) Probable exosome complex RNA-binding protein 1	32	0.71
12	ZBP2_CHICK (Q8UVD9) Zipcode-binding protein 2	32	0.71
13	MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, trac...	32	0.92
14	AKAP1_MOUSE (O08715) A kinase anchor protein 1, mitochondrial pr...	32	1.2
15	ECR1_METKA (Q8TYC0) Probable exosome complex RNA-binding protein 1	32	1.2
16	VIGLN_MOUSE (Q8VDJ3) Vigilin (High density lipoprotein-binding p...	32	1.2
17	AKAP1_RAT (O88884) A kinase anchor protein 1, mitochondrial prec...	31	1.6
18	ECR1_ARCFU (O29758) Probable exosome complex RNA-binding protein 1	31	1.6
19	PBP2_YEAST (P38151) PAB1-binding protein 2	31	1.6
20	VIGLN_HUMAN (Q00341) Vigilin (High density lipoprotein-binding p...	31	2.1
21	FUBP1_HUMAN (Q96AE4) Far upstream element-binding protein 1 (FUS...	30	2.7
22	PDE3B_MOUSE (Q61409) cGMP-inhibited 3',5'-cyclic phosphodiestera...	30	2.7
23	FUBP1_MOUSE (Q91WJ8) Far upstream element-binding protein 1 (FUS...	30	2.7
24	PHOL_MYCTU (P0A5S0) PhoH-like protein	30	2.7
25	PHOL_MYCBO (P0A5S1) PhoH-like protein	30	2.7
26	PDE3B_HUMAN (Q13370) cGMP-inhibited 3',5'-cyclic phosphodiestera...	30	2.7
27	Y1756_CLOAB (Q97I96) UPF0109 protein CAC1756	30	2.7
28	TDRKH_MOUSE (Q80VL1) Tudor and KH domain-containing protein	30	3.5
29	TDRKH_HUMAN (Q9Y2W6) Tudor and KH domain-containing protein	30	3.5
30	Y1711_CLOPE (Q8XJP5) UPF0109 protein CPE1711	30	3.5
31	LAP4_HUMAN (Q14160) LAP4 protein (Scribble homolog protein) (hSc...	30	3.5
32	SCNAA_CHICK (Q92075) Amiloride-sensitive sodium channel alpha-su...	30	4.6
33	NCOR1_XENLA (Q8QG78) Nuclear receptor corepressor 1 (N-CoR1) (N-...	30	4.6
34	PCBP4_MOUSE (P57724) Poly(rC)-binding protein 4 (Alpha-CP4)	30	4.6
35	PCBP4_HUMAN (P57723) Poly(rC)-binding protein 4 (Alpha-CP4)	30	4.6
36	BAT3_HUMAN (P46379) Large proline-rich protein BAT3 (HLA-B-assoc...	30	4.6
37	NU2M_RAT (P11662) NADH-ubiquinone oxidoreductase chain 2 (EC 1.6...	30	4.6
38	GRIP2_HUMAN (Q9C0E4) Glutamate receptor-interacting protein 2 (G...	30	4.6
39	ZN207_HUMAN (O43670) Zinc finger protein 207	29	6.0
40	RS3_WOLPM (Q73H92) 30S ribosomal protein S3	29	7.8
41	VIGLN_RAT (Q9Z1A6) Vigilin (High density lipoprotein-binding pro...	29	7.8

>ECR1_PYRAE (Q8ZVM8) Probable exosome complex RNA-binding protein 1|
          Length = 235

 Score = 36.2 bits (82), Expect = 0.049
 Identities = 24/92 (26%), Positives = 53/92 (57%), Gaps = 6/92 (6%)
 Frame = -3

Query: 384 DWPPLPTVPDDIEAEVRVPEVDILSLLDVPPGKMGRVIGRKGSSIMAVKE-SCNVEIHIG 208
           ++P + T+ D+     +V +V+  +++++ P K+ RVIG++GS +  + E  C++ +   
Sbjct: 129 EYPIILTLKDE-----KVGKVESGTVVEITPVKVPRVIGKRGSMLNTLMELGCDIVVGQN 183

Query: 207 G-----AKGPPDRVFIIGPVKEVRKAEAILRG 127
           G      K P D VF+   ++++ +AE+ + G
Sbjct: 184 GRIWVKCKDPRDEVFLASLIRKI-EAESHVMG 214

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>PCBP1_RABIT (O19048) Poly(rC)-binding protein 1 (Alpha-CP1) (hnRNP-E1)|
          Length = 356

 Score = 35.8 bits (81), Expect = 0.064
 Identities = 16/58 (27%), Positives = 31/58 (53%)
 Frame = -3

Query: 288 KMGRVIGRKGSSIMAVKESCNVEIHIGGAKGPPDRVFIIGPVKEVRKAEAILRGRMLE 115
           ++G +IG+KG S+  ++E     I+I     P   + + GP   + KA A++  ++ E
Sbjct: 24  EVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTNAIFKAFAMIIDKLEE 81



 Score = 29.3 bits (64), Expect = 6.0
 Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
 Frame = -3

Query: 306 LDVPPGKMGRVIGRKGSSIMAVKESCNVEIHIGG-AKGPPDR-VFIIGPVKEVRKAEAIL 133
           L +P   +G +IGR+G++I  +++    +I I    +G   R V I G    +  A+ ++
Sbjct: 284 LTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLI 343

Query: 132 RGRM 121
             R+
Sbjct: 344 NARL 347

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>PCBP1_MOUSE (P60335) Poly(rC)-binding protein 1 (Alpha-CP1) (hnRNP-E1)|
          Length = 356

 Score = 35.8 bits (81), Expect = 0.064
 Identities = 16/58 (27%), Positives = 31/58 (53%)
 Frame = -3

Query: 288 KMGRVIGRKGSSIMAVKESCNVEIHIGGAKGPPDRVFIIGPVKEVRKAEAILRGRMLE 115
           ++G +IG+KG S+  ++E     I+I     P   + + GP   + KA A++  ++ E
Sbjct: 24  EVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTNAIFKAFAMIIDKLEE 81



 Score = 29.3 bits (64), Expect = 6.0
 Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
 Frame = -3

Query: 306 LDVPPGKMGRVIGRKGSSIMAVKESCNVEIHIGG-AKGPPDR-VFIIGPVKEVRKAEAIL 133
           L +P   +G +IGR+G++I  +++    +I I    +G   R V I G    +  A+ ++
Sbjct: 284 LTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLI 343

Query: 132 RGRM 121
             R+
Sbjct: 344 NARL 347

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>PCBP1_HUMAN (Q15365) Poly(rC)-binding protein 1 (Alpha-CP1) (hnRNP-E1) (Nucleic|
           acid-binding protein SUB2.3)
          Length = 356

 Score = 35.8 bits (81), Expect = 0.064
 Identities = 16/58 (27%), Positives = 31/58 (53%)
 Frame = -3

Query: 288 KMGRVIGRKGSSIMAVKESCNVEIHIGGAKGPPDRVFIIGPVKEVRKAEAILRGRMLE 115
           ++G +IG+KG S+  ++E     I+I     P   + + GP   + KA A++  ++ E
Sbjct: 24  EVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTNAIFKAFAMIIDKLEE 81



 Score = 29.3 bits (64), Expect = 6.0
 Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
 Frame = -3

Query: 306 LDVPPGKMGRVIGRKGSSIMAVKESCNVEIHIGG-AKGPPDR-VFIIGPVKEVRKAEAIL 133
           L +P   +G +IGR+G++I  +++    +I I    +G   R V I G    +  A+ ++
Sbjct: 284 LTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLI 343

Query: 132 RGRM 121
             R+
Sbjct: 344 NARL 347

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>FUBP2_RAT (Q99PF5) Far upstream element-binding protein 2 (FUSE-binding|
           protein 2) (KH type splicing regulatory protein) (KSRP)
           (MAP2 RNA trans-acting protein 1) (MARTA1)
          Length = 721

 Score = 35.4 bits (80), Expect = 0.084
 Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 6/97 (6%)
 Frame = -3

Query: 405 INDNQQADWPPLPTVPDDIEAEVRV----PEVDILSLLDVPPGKMGRVIGRKGSSIMAVK 238
           + D  Q D   L +  D I +++      P   +     VP G +G +IGR G  I  ++
Sbjct: 113 LEDGDQPDSKKLASQGDSIGSQLGPIHPPPRTSMTEEYRVPDGMVGLIIGRGGEQINKIQ 172

Query: 237 E--SCNVEIHIGGAKGPPDRVFIIGPVKEVRKAEAIL 133
           +   C V+I       P   V + G  + V+KA+ +L
Sbjct: 173 QDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKMML 209

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>PCBP2_MOUSE (Q61990) Poly(rC)-binding protein 2 (Alpha-CP2) (Putative|
           heterogeneous nuclear ribonucleoprotein X) (hnRNP X)
           (CTBP) (CBP)
          Length = 362

 Score = 35.0 bits (79), Expect = 0.11
 Identities = 16/58 (27%), Positives = 31/58 (53%)
 Frame = -3

Query: 288 KMGRVIGRKGSSIMAVKESCNVEIHIGGAKGPPDRVFIIGPVKEVRKAEAILRGRMLE 115
           ++G +IG+KG S+  ++E     I+I     P   + + GP   + KA A++  ++ E
Sbjct: 24  EVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLEE 81



 Score = 30.0 bits (66), Expect = 3.5
 Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
 Frame = -3

Query: 306 LDVPPGKMGRVIGRKGSSIMAVKESCNVEIHIGG-AKGPPDR-VFIIGPVKEVRKAEAIL 133
           L +P   +G +IGR+G+ I  +++    +I I    +G  DR V I G    +  A+ ++
Sbjct: 289 LTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLI 348

Query: 132 RGRM 121
             R+
Sbjct: 349 NVRL 352

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>PCBP2_HUMAN (Q15366) Poly(rC)-binding protein 2 (Alpha-CP2) (hnRNP-E2)|
          Length = 365

 Score = 35.0 bits (79), Expect = 0.11
 Identities = 16/58 (27%), Positives = 31/58 (53%)
 Frame = -3

Query: 288 KMGRVIGRKGSSIMAVKESCNVEIHIGGAKGPPDRVFIIGPVKEVRKAEAILRGRMLE 115
           ++G +IG+KG S+  ++E     I+I     P   + + GP   + KA A++  ++ E
Sbjct: 24  EVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLEE 81



 Score = 30.0 bits (66), Expect = 3.5
 Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
 Frame = -3

Query: 306 LDVPPGKMGRVIGRKGSSIMAVKESCNVEIHIGG-AKGPPDR-VFIIGPVKEVRKAEAIL 133
           L +P   +G +IGR+G+ I  +++    +I I    +G  DR V I G    +  A+ ++
Sbjct: 292 LTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLI 351

Query: 132 RGRM 121
             R+
Sbjct: 352 NVRL 355

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>FUBP2_HUMAN (Q92945) Far upstream element-binding protein 2 (FUSE-binding|
           protein 2) (KH type splicing regulatory protein) (KSRP)
           (p75)
          Length = 707

 Score = 34.7 bits (78), Expect = 0.14
 Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 6/97 (6%)
 Frame = -3

Query: 405 INDNQQADWPPLPTVPDDIEAEVRV----PEVDILSLLDVPPGKMGRVIGRKGSSIMAVK 238
           + D  Q +   L +  D I +++      P   +     VP G +G +IGR G  I  ++
Sbjct: 112 LEDGDQPESKKLASQGDSISSQLGPIHPPPRTSMTEEYRVPDGMVGLIIGRGGEQINKIQ 171

Query: 237 E--SCNVEIHIGGAKGPPDRVFIIGPVKEVRKAEAIL 133
           +   C V+I       P   V + G  + V+KA+ +L
Sbjct: 172 QDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKMML 208

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>PCBP3_MOUSE (P57722) Poly(rC)-binding protein 3 (Alpha-CP3)|
          Length = 339

 Score = 33.9 bits (76), Expect = 0.24
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = -3

Query: 288 KMGRVIGRKGSSIMAVKESCNVEIHIGGAKGPPDRVFIIGPVKEVRKAEAIL 133
           ++G +IG+KG ++  ++E     I+I     P   V I GP   + KA A++
Sbjct: 24  EVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMI 75



 Score = 30.0 bits (66), Expect = 3.5
 Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
 Frame = -3

Query: 306 LDVPPGKMGRVIGRKGSSIMAVKESCNVEIHIGGA-KGPPDR-VFIIGPVKEVRKAEAIL 133
           L +P   +G +IGR+G+ I  +++    +I I  A +G  +R + I G    +  A+ ++
Sbjct: 266 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLI 325

Query: 132 RGRM 121
             R+
Sbjct: 326 NARL 329

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>PCBP3_HUMAN (P57721) Poly(rC)-binding protein 3 (Alpha-CP3)|
          Length = 339

 Score = 33.9 bits (76), Expect = 0.24
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = -3

Query: 288 KMGRVIGRKGSSIMAVKESCNVEIHIGGAKGPPDRVFIIGPVKEVRKAEAIL 133
           ++G +IG+KG ++  ++E     I+I     P   V I GP   + KA A++
Sbjct: 24  EVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMI 75



 Score = 30.0 bits (66), Expect = 3.5
 Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
 Frame = -3

Query: 306 LDVPPGKMGRVIGRKGSSIMAVKESCNVEIHIGGA-KGPPDR-VFIIGPVKEVRKAEAIL 133
           L +P   +G +IGR+G+ I  +++    +I I  A +G  +R + I G    +  A+ ++
Sbjct: 266 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLI 325

Query: 132 RGRM 121
             R+
Sbjct: 326 NARL 329

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>ECR1_METTH (O26780) Probable exosome complex RNA-binding protein 1|
          Length = 311

 Score = 32.3 bits (72), Expect = 0.71
 Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
 Frame = -3

Query: 309 LLDVPPGKMGRVIGRKGSSIMAVKESCNVEIHIG-----GAKGPPD 187
           L+ + P K+ R+IG++GS I  VKE  + +I +G       KG PD
Sbjct: 143 LVYITPTKVPRLIGKRGSMINMVKEKTHCDIVVGQNGVVWIKGEPD 188

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>ZBP2_CHICK (Q8UVD9) Zipcode-binding protein 2|
          Length = 769

 Score = 32.3 bits (72), Expect = 0.71
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
 Frame = -3

Query: 300 VPPGKMGRVIGRKGSSIMAVKE--SCNVEIHIGGAKGPPDRVFIIGPVKEVRKAEAIL 133
           VP G +G +IGR G  I  +++   C V+I       P   V + G  + V+KA+ +L
Sbjct: 215 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGSPEAVQKAKLML 272

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>MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, tracheobronchial)|
            (High molecular weight salivary mucin MG1) (Sublingual
            gland mucin)
          Length = 5703

 Score = 32.0 bits (71), Expect = 0.92
 Identities = 23/85 (27%), Positives = 37/85 (43%)
 Frame = +2

Query: 134  RIASAFLTSFTGPMMNTLSGGPFAPPIWISTLQDSFTAIIDDPFLPITRPIFPGGTSKSE 313
            ++ +   T FT    ++  G    PP+WIST     T         +T    P GT+ + 
Sbjct: 4533 KVPTTTTTGFTATPSSS-PGTALTPPVWISTTTTPTTTTPTTSGSTVTPSSIP-GTTHTA 4590

Query: 314  RISTSGTRTSASMSSGTVGRGGQSA 388
            R+ T+ T T A+ S  T     Q++
Sbjct: 4591 RVLTTTTTTVATGSMATPSSSTQTS 4615

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>AKAP1_MOUSE (O08715) A kinase anchor protein 1, mitochondrial precursor|
           (Protein kinase A-anchoring protein 1) (PRKA1)
           (Dual-specificity A-kinase-anchoring protein 1)
           (D-AKAP-1) (Spermatid A-kinase anchor protein) (S-AKAP)
          Length = 857

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 15/54 (27%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
 Frame = -3

Query: 369 PTVPDDIEAEVRVPEVDILSL-LDVPPGKMGRVIGRKGSSIMAVKESCNVEIHI 211
           P  P  ++A     +VD++   ++VP   +GR+IG++G  +  +K++   +I+I
Sbjct: 544 PDSPQSVQAGSNPKKVDLIIWEIEVPKHLVGRLIGKQGRYVSFLKQTSGAKIYI 597

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>ECR1_METKA (Q8TYC0) Probable exosome complex RNA-binding protein 1|
          Length = 239

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 16/47 (34%), Positives = 27/47 (57%)
 Frame = -3

Query: 348 EAEVRVPEVDILSLLDVPPGKMGRVIGRKGSSIMAVKESCNVEIHIG 208
           +A  R+  +    ++++ P K+ RVIGRKGS I  +K     +I +G
Sbjct: 142 DAPTRLGRLQGGQVVEIDPVKVPRVIGRKGSMIKMLKRVLGCDIVVG 188

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>VIGLN_MOUSE (Q8VDJ3) Vigilin (High density lipoprotein-binding protein)|
            (HDL-binding protein)
          Length = 1268

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 19/64 (29%), Positives = 32/64 (50%)
 Frame = -3

Query: 306  LDVPPGKMGRVIGRKGSSIMAVKESCNVEIHIGGAKGPPDRVFIIGPVKEVRKAEAILRG 127
            ++VP      +IG+KGS I  + +   V IH+   +   D + I G    + +A+A L  
Sbjct: 977  VEVPFDLHRYIIGQKGSGIRKMMDEFEVNIHVPAPELQSDTIAITGLAANLDRAKAGLLD 1036

Query: 126  RMLE 115
            R+ E
Sbjct: 1037 RVKE 1040

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>AKAP1_RAT (O88884) A kinase anchor protein 1, mitochondrial precursor|
           (Protein kinase A-anchoring protein 1) (PRKA1) (A-kinase
           anchor protein 121 kDa) (AKAP 121) (Dual specificity
           A-kinase-anchoring protein 1) (D-AKAP-1) (Spermatid
           A-kinase anchor protei
          Length = 854

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 15/54 (27%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
 Frame = -3

Query: 369 PTVPDDIEAEVRVPEVDILSL-LDVPPGKMGRVIGRKGSSIMAVKESCNVEIHI 211
           P  P  ++A     +VD++   ++VP   +GR+IG++G  +  +K++   +I+I
Sbjct: 541 PDSPQTVQAGSNPKKVDLIIWEIEVPKHLVGRLIGKQGRYVSFLKQTSGAKIYI 594

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>ECR1_ARCFU (O29758) Probable exosome complex RNA-binding protein 1|
          Length = 223

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 13/34 (38%), Positives = 23/34 (67%)
 Frame = -3

Query: 309 LLDVPPGKMGRVIGRKGSSIMAVKESCNVEIHIG 208
           ++ + P ++ RVIG+KGS I  +K   +V+I +G
Sbjct: 139 IVAINPARVPRVIGKKGSMIKLLKSELDVQIVVG 172

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>PBP2_YEAST (P38151) PAB1-binding protein 2|
          Length = 413

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
 Frame = -3

Query: 276 VIGRKGSSIMAVKESCNVEIHI-GGAKGPPDR-VFIIGPVKEVRKAEAILRGRMLE 115
           ++G KG++I  +K   +  I+I    +G P+R V++ G   +V KA  ++   +LE
Sbjct: 81  IVGHKGATISRIKSETSARINISNNIRGVPERIVYVRGTCDDVAKAYGMIVRALLE 136

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>VIGLN_HUMAN (Q00341) Vigilin (High density lipoprotein-binding protein)|
            (HDL-binding protein)
          Length = 1268

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 20/64 (31%), Positives = 32/64 (50%)
 Frame = -3

Query: 306  LDVPPGKMGRVIGRKGSSIMAVKESCNVEIHIGGAKGPPDRVFIIGPVKEVRKAEAILRG 127
            ++VP      VIG+KGS I  + +   V IH+   +   D + I G    + +A+A L  
Sbjct: 977  VEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPELQSDIIAITGLAANLDRAKAGLLE 1036

Query: 126  RMLE 115
            R+ E
Sbjct: 1037 RVKE 1040

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>FUBP1_HUMAN (Q96AE4) Far upstream element-binding protein 1 (FUSE-binding|
           protein 1) (FBP) (DNA helicase V) (HDH V)
          Length = 643

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = -3

Query: 300 VPPGKMGRVIGRKGSSIMAVKESCNVEIHIGGAKG--PPDRVFIIGPVKEVRKAEAIL 133
           VP G +G +IGR G  I  +++    +I I    G  P     + G  + V+ A+ +L
Sbjct: 106 VPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLL 163

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>PDE3B_MOUSE (Q61409) cGMP-inhibited 3',5'-cyclic phosphodiesterase B (EC|
           3.1.4.17) (Cyclic GMP-inhibited phosphodiesterase B)
           (CGI-PDE B) (CGIPDE1) (Fragment)
          Length = 799

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = +2

Query: 104 FL*NSSIRPLRIASAFLTSFTGPMMNTLSGGPFAPPIWISTLQDSFTAIIDD 259
           F+  SS +  ++  +F+T   GP+ N+       P  WI T +   T   DD
Sbjct: 666 FMDRSSPQLAKLQESFITHIVGPLCNSYDAAGLLPGQWIETEEGDDTESDDD 717

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>FUBP1_MOUSE (Q91WJ8) Far upstream element-binding protein 1 (FUSE-binding|
           protein 1) (FBP)
          Length = 651

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = -3

Query: 300 VPPGKMGRVIGRKGSSIMAVKESCNVEIHIGGAKG--PPDRVFIIGPVKEVRKAEAIL 133
           VP G +G +IGR G  I  +++    +I I    G  P     + G  + V+ A+ +L
Sbjct: 103 VPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLL 160

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>PHOL_MYCTU (P0A5S0) PhoH-like protein|
          Length = 352

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 16/71 (22%), Positives = 36/71 (50%)
 Frame = -3

Query: 345 AEVRVPEVDILSLLDVPPGKMGRVIGRKGSSIMAVKESCNVEIHIGGAKGPPDRVFIIGP 166
           A  R  +  + S +DVPP  +  ++G    ++ A++ + + ++H+ G     + V + G 
Sbjct: 12  AGARQADAQVRSSIDVPPDLVVGLLGSADENLRALERTLSADLHVRG-----NAVTLCGE 66

Query: 165 VKEVRKAEAIL 133
             +V  AE ++
Sbjct: 67  PADVALAERVI 77

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>PHOL_MYCBO (P0A5S1) PhoH-like protein|
          Length = 352

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 16/71 (22%), Positives = 36/71 (50%)
 Frame = -3

Query: 345 AEVRVPEVDILSLLDVPPGKMGRVIGRKGSSIMAVKESCNVEIHIGGAKGPPDRVFIIGP 166
           A  R  +  + S +DVPP  +  ++G    ++ A++ + + ++H+ G     + V + G 
Sbjct: 12  AGARQADAQVRSSIDVPPDLVVGLLGSADENLRALERTLSADLHVRG-----NAVTLCGE 66

Query: 165 VKEVRKAEAIL 133
             +V  AE ++
Sbjct: 67  PADVALAERVI 77

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>PDE3B_HUMAN (Q13370) cGMP-inhibited 3',5'-cyclic phosphodiesterase B (EC|
            3.1.4.17) (Cyclic GMP-inhibited phosphodiesterase B)
            (CGI-PDE B) (CGIPDE1) (CGIP1)
          Length = 1112

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = +2

Query: 104  FL*NSSIRPLRIASAFLTSFTGPMMNTLSGGPFAPPIWISTLQDSFTAIIDD 259
            F+  SS +  ++  +F+T   GP+ N+       P  W+   +D+ T   DD
Sbjct: 976  FMDRSSPQLAKLQESFITHIVGPLCNSYDAAGLLPGQWLEAEEDNDTESGDD 1027

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>Y1756_CLOAB (Q97I96) UPF0109 protein CAC1756|
          Length = 75

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -3

Query: 360 PDDIEAEVRVPEVDILSLLDVPPGKMGRVIGRKGSSIMAVK 238
           PD+++      E  I+  L V P  MG+VIG++G    A++
Sbjct: 16  PDEVQVSEVTGEQSIILELKVAPEDMGKVIGKQGRIAKAIR 56

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>TDRKH_MOUSE (Q80VL1) Tudor and KH domain-containing protein|
          Length = 560

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
 Frame = -3

Query: 357 DDIEAEVRVPEVDILSLLDVPPGKMGRVIGRKGSSIMAVKESCNVEIHIGGAKGPPDRVF 178
           DDIE E+RVP+  +             +IGR+G++I  +++     I +       +RV 
Sbjct: 51  DDIEIEMRVPQEAVKL-----------IIGRQGANIKQLRKQTGARIDVDTEDVGDERVL 99

Query: 177 II-GPVKEVRKAEAILRGRMLE 115
           +I G   +V KA+A +   + E
Sbjct: 100 LISGFPVQVCKAKAAIHQILTE 121

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>TDRKH_HUMAN (Q9Y2W6) Tudor and KH domain-containing protein|
          Length = 606

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
 Frame = -3

Query: 357 DDIEAEVRVPEVDILSLLDVPPGKMGRVIGRKGSSIMAVKESCNVEIHIGGAKGPPDRVF 178
           DDIE E+RVP+  +             +IGR+G++I  +++     I +       +RV 
Sbjct: 51  DDIEIEMRVPQEAVKL-----------IIGRQGANIKQLRKQTGARIDVDTEDVGDERVL 99

Query: 177 II-GPVKEVRKAEAILRGRMLE 115
           +I G   +V KA+A +   + E
Sbjct: 100 LISGFPVQVCKAKAAIHQILTE 121

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>Y1711_CLOPE (Q8XJP5) UPF0109 protein CPE1711|
          Length = 75

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -3

Query: 360 PDDIEAEVRVPEVDILSLLDVPPGKMGRVIGRKGSSIMAVK 238
           P+D+     + E  I+  L V P  MG+VIG++G    A++
Sbjct: 16  PEDVHVNEVLGEESIILELKVSPEDMGKVIGKQGRIAKAIR 56

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>LAP4_HUMAN (Q14160) LAP4 protein (Scribble homolog protein) (hScrib)|
          Length = 1630

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 8/97 (8%)
 Frame = -3

Query: 408  CINDNQQADWPPLPTVPDDIEAEVR--------VPEVDILSLLDVPPGKMGRVIGRKGSS 253
            C    QQ   PP P  PD++ A V+        VP           P   G     +  S
Sbjct: 1297 CSPSGQQ---PPSPPSPDELPANVKQAYRAFAAVPTSHPPEDAPAQPPTPGPAASPEQLS 1353

Query: 252  IMAVKESCNVEIHIGGAKGPPDRVFIIGPVKEVRKAE 142
                ++   +E+ +  A+GPP RV ++G   ++RK +
Sbjct: 1354 FRERQKYFELEVRVPQAEGPPKRVSLVG-ADDLRKMQ 1389

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>SCNAA_CHICK (Q92075) Amiloride-sensitive sodium channel alpha-subunit|
           (Epithelial Na+ channel alpha subunit) (Alpha ENaC)
           (Nonvoltage-gated sodium channel 1 alpha subunit)
           (SCNEA) (Alpha NaCH)
          Length = 637

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = -3

Query: 426 LYCRCFCINDNQQADW-PPLPTVPDDIEAEVRVPEVDILSLLDVPPG 289
           LY  C+  NDN  + W   LP + + +   VR  + D + LL    G
Sbjct: 288 LYGNCYTFNDNSSSLWTSSLPGINNGLSLVVRTEQNDFIPLLSTVTG 334

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>NCOR1_XENLA (Q8QG78) Nuclear receptor corepressor 1 (N-CoR1) (N-CoR) (xN-CoR)|
          Length = 2498

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 9/94 (9%)
 Frame = +2

Query: 206  PPIWISTLQDSFTAIIDDPFLPITRPIF-PGGTSKSERISTSGTRTSASMSSGTVGRGGQ 382
            PP+         T++ D   LP+TRP   P     S + S + +   + ++ G++ +G  
Sbjct: 1062 PPVLQPAPHQVITSLSDSARLPVTRPTRPPPPLIPSSKTSATSSDKPSFITGGSISQGTP 1121

Query: 383  SACWLSFMQKHLQYS--------SLRTARRHEDT 460
                 S  Q + Q +        SL   R+HE T
Sbjct: 1122 GTYLASLSQPYSQETLKPSVGSISLGLPRQHEST 1155

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>PCBP4_MOUSE (P57724) Poly(rC)-binding protein 4 (Alpha-CP4)|
          Length = 403

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
 Frame = -3

Query: 300 VPPGKMGRVIGRKGSSIMAVKESCNVEIHIGG-AKGPPDR-VFIIGPVKEVRKAEAIL 133
           VP   +G VIGR+GS I  +++     I IG  A+G  +R V I G    +  A+ ++
Sbjct: 248 VPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLI 305

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>PCBP4_HUMAN (P57723) Poly(rC)-binding protein 4 (Alpha-CP4)|
          Length = 403

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
 Frame = -3

Query: 300 VPPGKMGRVIGRKGSSIMAVKESCNVEIHIGG-AKGPPDR-VFIIGPVKEVRKAEAIL 133
           VP   +G VIGR+GS I  +++     I IG  A+G  +R V I G    +  A+ ++
Sbjct: 248 VPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLI 305

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>BAT3_HUMAN (P46379) Large proline-rich protein BAT3 (HLA-B-associated|
           transcript 3) (Protein G3)
          Length = 1132

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 22/71 (30%), Positives = 28/71 (39%), Gaps = 8/71 (11%)
 Frame = +2

Query: 194 GPFAPPIWISTLQDSFTA--------IIDDPFLPITRPIFPGGTSKSERISTSGTRTSAS 349
           GP  PP    TL              +I  P  P  RP  PGG   S  +  +G  T+AS
Sbjct: 477 GPLGPPGHGQTLGQQVPGFPTAPTRVVIARPTPPQARPSHPGGPPVSGTLQGAGLGTNAS 536

Query: 350 MSSGTVGRGGQ 382
           ++    G  GQ
Sbjct: 537 LAQMVSGLVGQ 547

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>NU2M_RAT (P11662) NADH-ubiquinone oxidoreductase chain 2 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 2)
          Length = 345

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 16/44 (36%), Positives = 26/44 (59%)
 Frame = +2

Query: 122 IRPLRIASAFLTSFTGPMMNTLSGGPFAPPIWISTLQDSFTAII 253
           + P+ +   +LT+F G ++ TLS     PP+W+  L+ S  AII
Sbjct: 1   MNPITLTIIYLTTFKGRLITTLSTN--LPPMWVG-LEMSLLAII 41

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>GRIP2_HUMAN (Q9C0E4) Glutamate receptor-interacting protein 2 (GRIP2 protein)|
          Length = 1043

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 21/67 (31%), Positives = 32/67 (47%)
 Frame = +2

Query: 182 TLSGGPFAPPIWISTLQDSFTAIIDDPFLPITRPIFPGGTSKSERISTSGTRTSASMSSG 361
           +LS  PF+ P    TL  +F+          ++P+ P  T    R      ++S S++S 
Sbjct: 386 SLSSTPFSSP----TLNHAFSCNNPSTLPRGSQPMSPRTTMGRRRQRRREHKSSLSLASS 441

Query: 362 TVGRGGQ 382
           TVG GGQ
Sbjct: 442 TVGPGGQ 448

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>ZN207_HUMAN (O43670) Zinc finger protein 207|
          Length = 478

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +2

Query: 242 TAIIDDPFLPITRPIFPGGTSKSERISTSGTRTSASMS 355
           TA +  P  P+T+P+FP        +++S T +S S S
Sbjct: 240 TATVPAPQPPVTKPLFPSAGQMGTPVTSSSTASSNSES 277

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>RS3_WOLPM (Q73H92) 30S ribosomal protein S3|
          Length = 204

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 6/48 (12%)
 Frame = -3

Query: 324 VDILSLLDVPPGKMGRVIGRKGSSIMAVKESC------NVEIHIGGAK 199
           +D++S++ +   + G +IG+KGS I  +K+        NVE+++ G K
Sbjct: 59  IDLVSVI-IHSSRPGVIIGKKGSDIEKIKQKIAEKVKNNVEVNVVGVK 105

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>VIGLN_RAT (Q9Z1A6) Vigilin (High density lipoprotein-binding protein)|
            (HDL-binding protein)
          Length = 1268

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 18/64 (28%), Positives = 31/64 (48%)
 Frame = -3

Query: 306  LDVPPGKMGRVIGRKGSSIMAVKESCNVEIHIGGAKGPPDRVFIIGPVKEVRKAEAILRG 127
            ++VP      +IG+KGS I  + +   V IH+   +     + I G    + +A+A L  
Sbjct: 977  VEVPFDLHRYIIGQKGSGIRKMMDEFEVNIHVPAPELQSHTIAITGLAANLDRAKAGLLD 1036

Query: 126  RMLE 115
            R+ E
Sbjct: 1037 RVKE 1040


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,741,691
Number of Sequences: 219361
Number of extensions: 1498599
Number of successful extensions: 4908
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 4701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4906
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3465624120
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result