ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd25h20
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK100223.1| Oryza sativa (japonica cultivar-group) cDNA clon... 458 e-126
2ref|NM_193577.1| Oryza sativa (japonica cultivar-group), predic... 456 e-125
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 200 3e-48
4dbj|AP003141.3| Oryza sativa (japonica cultivar-group) genomic D... 200 3e-48
5gb|BT017548.1| Zea mays clone EL01N0423H02.c mRNA sequence 180 3e-42
6ref|XM_741410.1| Aspergillus fumigatus Af293 hypothetical protei... 46 0.11
7dbj|AP002782.3| Homo sapiens genomic DNA, chromosome 11q clone:R... 44 0.43
8gb|BT013287.1| Lycopersicon esculentum clone 134897R, mRNA sequence 42 1.7
9gb|AC023050.36| Homo sapiens 12 BAC RP11-428G5 (Roswell Park Can... 42 1.7
10gb|AC126177.8| Homo sapiens 12 BAC RP11-554D14 (Roswell Park Can... 42 1.7
11gb|DQ284465.1| Solanum tuberosum clone 096G02 3'-5' exonuclease ... 42 1.7
12gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome 40 6.7
13gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, ... 40 6.7
14ref|XM_446615.1| Candida glabrata CBS138, CAGL0G05830g partial mRNA 40 6.7
15emb|BX005268.26| Zebrafish DNA sequence from clone DKEY-11L22 in... 40 6.7
16emb|BX510909.19| Zebrafish DNA sequence from clone DKEY-195E19 i... 40 6.7
17gb|AC072054.10| Homo sapiens BAC clone RP11-33P21 from 7, comple... 40 6.7
18emb|CR383684.7| Zebrafish DNA sequence from clone DKEYP-69E1 in ... 40 6.7
19emb|AL596179.3| Human DNA sequence from clone RP11-49A12 on chro... 40 6.7
20emb|AL512510.13| Human DNA sequence from clone RP11-537P24 on ch... 40 6.7
21emb|AL096863.13|HS1119I23 Human DNA sequence from clone RP5-1119... 40 6.7
22emb|CR380953.1| Candida glabrata strain CBS138 chromosome G comp... 40 6.7
23emb|AL161982.1|HSM802585 Homo sapiens genomic DNA; cDNA DKFZp761... 40 6.7
24emb|CR388146.9| Zebrafish DNA sequence from clone DKEY-205F14 in... 40 6.7
25emb|CR293500.7| Zebrafish DNA sequence from clone DKEY-211I20 in... 40 6.7
26emb|BX511020.10| Zebrafish DNA sequence from clone RP71-9C18, co... 40 6.7
27ref|XM_698012.1| PREDICTED: Danio rerio hypothetical protein LOC... 40 6.7
28emb|BX813317.11| Mouse DNA sequence from clone RP24-297H17 on ch... 40 6.7
29emb|AL807749.21| Zebrafish DNA sequence from clone CH211-197F20,... 40 6.7
30emb|BX324003.7| Zebrafish DNA sequence from clone DKEY-81I14 in ... 40 6.7
31emb|BX276122.23| Zebrafish DNA sequence from clone CH211-232H22,... 40 6.7
32emb|AL732504.23| Mouse DNA sequence from clone RP23-177I18 on ch... 40 6.7
33gb|AC021889.29| Homo sapiens 3 BAC RP11-554F8 (Roswell Park Canc... 40 6.7
34emb|BX640584.10| Zebrafish DNA sequence from clone DKEY-78O7 in ... 40 6.7
35gb|AC153774.3| Loxodonta africana clone VMRC15-554J14, complete ... 40 6.7
36emb|BX649616.5| Zebrafish DNA sequence from clone CH211-165K17 i... 40 6.7
37emb|AL928917.9| Zebrafish DNA sequence from clone CH211-103D12 i... 40 6.7
38emb|BX510947.20| Zebrafish DNA sequence from clone DKEY-226F16 i... 40 6.7
39emb|CR792418.18| Zebrafish DNA sequence from clone DKEY-59L11 in... 40 6.7
40emb|BX649283.16| Zebrafish DNA sequence from clone DKEYP-86C4 in... 40 6.7
41gb|U22443.1|EFU22443 Ellobius fuscocapillus sex-determining prot... 40 6.7 
>dbj|AK100223.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023047H21, full
            insert sequence
          Length = 1245

 Score =  458 bits (231), Expect = e-126
 Identities = 348/387 (89%)
 Strand = Plus / Minus

                                                                        
Query: 107  ctctaaaattccagcattcggcccctcaggatagcctccgcctttctgacttccttcact 166
            ||||| || |||||||| ||||| |  ||||||||||| || ||||||||||||| ||||
Sbjct: 1082 ctctagaactccagcatgcggcctcggaggatagcctcagcttttctgacttcctgcact 1023

                                                                        
Query: 167  ggtccaatgatgaataccctatctggaggcccctttgcaccaccgatatggatttcaaca 226
            |||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||
Sbjct: 1022 ggtccaatgatgaataccctgtctggaggtccctttgcaccaccaatatggatttcaaca 963

                                                                        
Query: 227  ttgcaagattctttcacggccattattgacgatccttttctgccaataacgcgtcccatt 286
            ||||||||| |||||||  |||||||||| |||||||||||||||||||| || ||||||
Sbjct: 962  ttgcaagatgctttcacttccattattgatgatccttttctgccaataacacgccccatt 903

                                                                        
Query: 287  tttccaggaggcacatctaagagcgaaaggatatccacttcaggaacacggacttcagct 346
            || |||||||||||||| ||||  || ||||||||||| |||||||||   || |||| |
Sbjct: 902  ttgccaggaggcacatccaagactgacaggatatccacctcaggaacataaacatcaggt 843

                                                                        
Query: 347  tcaatgtcatcagggacagttggaagaggtggccaatctgcctgctggttgtcatttatg 406
            ||||| |||||||||||||||||||||||||||||||| || | || |||||||||||||
Sbjct: 842  tcaatttcatcagggacagttggaagaggtggccaatccgcatacttgttgtcatttatg 783

                                                                        
Query: 407  caaaagcacctgcagtatagctcacttcgtactgccagacgccatgaggatactttgctt 466
            |||||||||||||||||||||||||| || |||| |||||||||| | ||||||||||||
Sbjct: 782  caaaagcacctgcagtatagctcactgcgaactgacagacgccataaagatactttgctt 723

                                       
Query: 467  aacttctccatcattttctcatgtata 493
            |||||||||||||||||||||||||||
Sbjct: 722  aacttctccatcattttctcatgtata 696



 Score = 44.1 bits (22), Expect = 0.43
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 33   agtaccacatgcatttctgtat 54
            ||||||||||||||||||||||
Sbjct: 1177 agtaccacatgcatttctgtat 1156
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>ref|NM_193577.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1209

 Score =  456 bits (230), Expect = e-125
 Identities = 341/378 (90%)
 Strand = Plus / Minus

                                                                        
Query: 116  tccagcattcggcccctcaggatagcctccgcctttctgacttccttcactggtccaatg 175
            |||||||| ||||| |  ||||||||||| || ||||||||||||| |||||||||||||
Sbjct: 1202 tccagcatgcggcctcggaggatagcctcagcttttctgacttcctgcactggtccaatg 1143

                                                                        
Query: 176  atgaataccctatctggaggcccctttgcaccaccgatatggatttcaacattgcaagat 235
            ||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct: 1142 atgaataccctgtctggaggtccctttgcaccaccaatatggatttcaacattgcaagat 1083

                                                                        
Query: 236  tctttcacggccattattgacgatccttttctgccaataacgcgtcccatttttccagga 295
             |||||||  |||||||||| |||||||||||||||||||| || |||||||| ||||||
Sbjct: 1082 gctttcacttccattattgatgatccttttctgccaataacacgccccattttgccagga 1023

                                                                        
Query: 296  ggcacatctaagagcgaaaggatatccacttcaggaacacggacttcagcttcaatgtca 355
            |||||||| ||||  || ||||||||||| |||||||||   || |||| |||||| |||
Sbjct: 1022 ggcacatccaagactgacaggatatccacctcaggaacataaacatcaggttcaatttca 963

                                                                        
Query: 356  tcagggacagttggaagaggtggccaatctgcctgctggttgtcatttatgcaaaagcac 415
            ||||||||||||||||||||||||||||| || | || ||||||||||||||||||||||
Sbjct: 962  tcagggacagttggaagaggtggccaatccgcatacttgttgtcatttatgcaaaagcac 903

                                                                        
Query: 416  ctgcagtatagctcacttcgtactgccagacgccatgaggatactttgcttaacttctcc 475
            ||||||||||||||||| || |||| |||||||||| | |||||||||||||||||||||
Sbjct: 902  ctgcagtatagctcactgcgaactgacagacgccataaagatactttgcttaacttctcc 843

                              
Query: 476  atcattttctcatgtata 493
            ||||||||||||||||||
Sbjct: 842  atcattttctcatgtata 825
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  200 bits (101), Expect = 3e-48
 Identities = 128/137 (93%)
 Strand = Plus / Plus

                                                                            
Query: 357      cagggacagttggaagaggtggccaatctgcctgctggttgtcatttatgcaaaagcacc 416
                |||||||||||||||||||||||||||| || | || |||||||||||||||||||||||
Sbjct: 21696812 cagggacagttggaagaggtggccaatccgcatacttgttgtcatttatgcaaaagcacc 21696871

                                                                            
Query: 417      tgcagtatagctcacttcgtactgccagacgccatgaggatactttgcttaacttctcca 476
                |||||||||||||||| || |||| |||||||||| | ||||||||||||||||||||||
Sbjct: 21696872 tgcagtatagctcactgcgaactgacagacgccataaagatactttgcttaacttctcca 21696931

                                 
Query: 477      tcattttctcatgtata 493
                |||||||||||||||||
Sbjct: 21696932 tcattttctcatgtata 21696948



 Score =  119 bits (60), Expect = 9e-24
 Identities = 96/108 (88%)
 Strand = Plus / Plus

                                                                            
Query: 227      ttgcaagattctttcacggccattattgacgatccttttctgccaataacgcgtcccatt 286
                ||||||||| |||||||  |||||||||| |||||||||||||||||||| || ||||||
Sbjct: 21696325 ttgcaagatgctttcacttccattattgatgatccttttctgccaataacacgccccatt 21696384

                                                                
Query: 287      tttccaggaggcacatctaagagcgaaaggatatccacttcaggaaca 334
                || |||||||||||||| ||||  || ||||||||||| |||||||||
Sbjct: 21696385 ttgccaggaggcacatccaagactgacaggatatccacctcaggaaca 21696432



 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 69/78 (88%)
 Strand = Plus / Plus

                                                                            
Query: 107      ctctaaaattccagcattcggcccctcaggatagcctccgcctttctgacttccttcact 166
                ||||| || |||||||| ||||| |  ||||||||||| || ||||||||||||| ||||
Sbjct: 21695275 ctctagaactccagcatgcggcctcggaggatagcctcagcttttctgacttcctgcact 21695334

                                  
Query: 167      ggtccaatgatgaatacc 184
                ||||||||||||||||||
Sbjct: 21695335 ggtccaatgatgaatacc 21695352



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 48/52 (92%)
 Strand = Plus / Plus

                                                                    
Query: 181      taccctatctggaggcccctttgcaccaccgatatggatttcaacattgcaa 232
                |||||| |||||||| |||||||||||||| ||||||||||||||| |||||
Sbjct: 21696183 taccctgtctggaggtccctttgcaccaccaatatggatttcaacactgcaa 21696234



 Score = 44.1 bits (22), Expect = 0.43
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 33       agtaccacatgcatttctgtat 54
                ||||||||||||||||||||||
Sbjct: 21695180 agtaccacatgcatttctgtat 21695201
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>dbj|AP003141.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0002B05
          Length = 141275

 Score =  200 bits (101), Expect = 3e-48
 Identities = 128/137 (93%)
 Strand = Plus / Plus

                                                                         
Query: 357   cagggacagttggaagaggtggccaatctgcctgctggttgtcatttatgcaaaagcacc 416
             |||||||||||||||||||||||||||| || | || |||||||||||||||||||||||
Sbjct: 48863 cagggacagttggaagaggtggccaatccgcatacttgttgtcatttatgcaaaagcacc 48922

                                                                         
Query: 417   tgcagtatagctcacttcgtactgccagacgccatgaggatactttgcttaacttctcca 476
             |||||||||||||||| || |||| |||||||||| | ||||||||||||||||||||||
Sbjct: 48923 tgcagtatagctcactgcgaactgacagacgccataaagatactttgcttaacttctcca 48982

                              
Query: 477   tcattttctcatgtata 493
             |||||||||||||||||
Sbjct: 48983 tcattttctcatgtata 48999



 Score =  119 bits (60), Expect = 9e-24
 Identities = 96/108 (88%)
 Strand = Plus / Plus

                                                                         
Query: 227   ttgcaagattctttcacggccattattgacgatccttttctgccaataacgcgtcccatt 286
             ||||||||| |||||||  |||||||||| |||||||||||||||||||| || ||||||
Sbjct: 48376 ttgcaagatgctttcacttccattattgatgatccttttctgccaataacacgccccatt 48435

                                                             
Query: 287   tttccaggaggcacatctaagagcgaaaggatatccacttcaggaaca 334
             || |||||||||||||| ||||  || ||||||||||| |||||||||
Sbjct: 48436 ttgccaggaggcacatccaagactgacaggatatccacctcaggaaca 48483



 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 69/78 (88%)
 Strand = Plus / Plus

                                                                         
Query: 107   ctctaaaattccagcattcggcccctcaggatagcctccgcctttctgacttccttcact 166
             ||||| || |||||||| ||||| |  ||||||||||| || ||||||||||||| ||||
Sbjct: 47326 ctctagaactccagcatgcggcctcggaggatagcctcagcttttctgacttcctgcact 47385

                               
Query: 167   ggtccaatgatgaatacc 184
             ||||||||||||||||||
Sbjct: 47386 ggtccaatgatgaatacc 47403



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 48/52 (92%)
 Strand = Plus / Plus

                                                                 
Query: 181   taccctatctggaggcccctttgcaccaccgatatggatttcaacattgcaa 232
             |||||| |||||||| |||||||||||||| ||||||||||||||| |||||
Sbjct: 48234 taccctgtctggaggtccctttgcaccaccaatatggatttcaacactgcaa 48285



 Score = 44.1 bits (22), Expect = 0.43
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 33    agtaccacatgcatttctgtat 54
             ||||||||||||||||||||||
Sbjct: 47231 agtaccacatgcatttctgtat 47252
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>gb|BT017548.1| Zea mays clone EL01N0423H02.c mRNA sequence
          Length = 428

 Score =  180 bits (91), Expect = 3e-42
 Identities = 160/183 (87%)
 Strand = Plus / Minus

                                                                       
Query: 106 tctctaaaattccagcattcggcccctcaggatagcctccgcctttctgacttccttcac 165
           |||||| || |||||||||||||| || | ||| ||||| || || |||||||| |||||
Sbjct: 193 tctctagaactccagcattcggcctctgaagatggcctcggctttcctgacttcattcac 134

                                                                       
Query: 166 tggtccaatgatgaataccctatctggaggcccctttgcaccaccgatatggatttcaac 225
           || |||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||
Sbjct: 133 tgatccaatgatgaaaaccctatctggaggccccttagcaccaccaatatggatttcaac 74

                                                                       
Query: 226 attgcaagattctttcacggccattattgacgatccttttctgccaataacgcgtcccat 285
            |||||||||||||||||  ||||||| |  || || |||||||||||||| ||||||||
Sbjct: 73  gttgcaagattctttcacaaccattatagttgacccctttctgccaataactcgtcccat 14

              
Query: 286 ttt 288
           |||
Sbjct: 13  ttt 11
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>ref|XM_741410.1| Aspergillus fumigatus Af293 hypothetical protein (Afu4g03170)
           partial mRNA
          Length = 564

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 260 ccttttctgccaataacgcgtcc 282
           |||||||||||||||||||||||
Sbjct: 139 ccttttctgccaataacgcgtcc 161
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>dbj|AP002782.3| Homo sapiens genomic DNA, chromosome 11q clone:RP11-660M18, complete
             sequences
          Length = 153078

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 37    ccacatgcatttctgtattcct 58
             ||||||||||||||||||||||
Sbjct: 24785 ccacatgcatttctgtattcct 24764
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>gb|BT013287.1| Lycopersicon esculentum clone 134897R, mRNA sequence
          Length = 1244

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 264 ttctgccaataacgcgtcccatttt 288
           ||||||||||||| |||||||||||
Sbjct: 889 ttctgccaataacacgtcccatttt 865
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>gb|AC023050.36| Homo sapiens 12 BAC RP11-428G5 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 186864

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 372    gaggtggccaatctgcctgct 392
              |||||||||||||||||||||
Sbjct: 135064 gaggtggccaatctgcctgct 135044
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>gb|AC126177.8| Homo sapiens 12 BAC RP11-554D14 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 131209

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 350    atgtcatcagggacagttgga 370
              |||||||||||||||||||||
Sbjct: 113158 atgtcatcagggacagttgga 113138
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>gb|DQ284465.1| Solanum tuberosum clone 096G02 3'-5' exonuclease domain-containing
           protein-like mRNA, complete cds
          Length = 1249

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 264 ttctgccaataacgcgtcccatttt 288
           ||||||||||||| |||||||||||
Sbjct: 867 ttctgccaataacacgtcccatttt 843
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>gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome
          Length = 2364842

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 240    tcacggccattattgacgat 259
              ||||||||||||||||||||
Sbjct: 939367 tcacggccattattgacgat 939386
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>gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, complete sequence
          Length = 4837408

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 214     atggatttcaacattgcaag 233
               ||||||||||||||||||||
Sbjct: 4500152 atggatttcaacattgcaag 4500171
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>ref|XM_446615.1| Candida glabrata CBS138, CAGL0G05830g partial mRNA
          Length = 2532

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 469  cttctccatcattttctcat 488
            ||||||||||||||||||||
Sbjct: 1905 cttctccatcattttctcat 1886
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>emb|BX005268.26| Zebrafish DNA sequence from clone DKEY-11L22 in linkage group 14,
              complete sequence
          Length = 182719

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 95     caaaagtcctttctctaaaa 114
              ||||||||||||||||||||
Sbjct: 119686 caaaagtcctttctctaaaa 119705
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>emb|BX510909.19| Zebrafish DNA sequence from clone DKEY-195E19 in linkage group 5,
            complete sequence
          Length = 190731

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 95   caaaagtcctttctctaaaa 114
            ||||||||||||||||||||
Sbjct: 1964 caaaagtcctttctctaaaa 1983
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>gb|AC072054.10| Homo sapiens BAC clone RP11-33P21 from 7, complete sequence
          Length = 154037

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 459    ctttgcttaacttctccatc 478
              ||||||||||||||||||||
Sbjct: 117696 ctttgcttaacttctccatc 117715
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>emb|CR383684.7| Zebrafish DNA sequence from clone DKEYP-69E1 in linkage group 3,
             complete sequence
          Length = 111124

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 202   tgcaccaccgatatggattt 221
             ||||||||||||||||||||
Sbjct: 15731 tgcaccaccgatatggattt 15712
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>emb|AL596179.3| Human DNA sequence from clone RP11-49A12 on chromosome 6, complete
              sequence
          Length = 169159

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 103    ctttctctaaaattccagca 122
              ||||||||||||||||||||
Sbjct: 112313 ctttctctaaaattccagca 112294
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>emb|AL512510.13| Human DNA sequence from clone RP11-537P24 on chromosome 6 Contains a CpG
              island, complete sequence
          Length = 170970

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 39     acatgcatttctgtattccttgtgttca 66
              |||| |||||||||||||| ||||||||
Sbjct: 139743 acattcatttctgtattccctgtgttca 139716
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>emb|AL096863.13|HS1119I23 Human DNA sequence from clone RP5-1119I23 on chromosome 10, complete
             sequence
          Length = 98818

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 222   caacattgcaagattctttc 241
             ||||||||||||||||||||
Sbjct: 23506 caacattgcaagattctttc 23487
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>emb|CR380953.1| Candida glabrata strain CBS138 chromosome G complete sequence
          Length = 992211

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 469    cttctccatcattttctcat 488
              ||||||||||||||||||||
Sbjct: 562570 cttctccatcattttctcat 562589
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>emb|AL161982.1|HSM802585 Homo sapiens genomic DNA; cDNA DKFZp761J1224 (from clone
            DKFZp761J1224)
          Length = 5412

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 222  caacattgcaagattctttc 241
            ||||||||||||||||||||
Sbjct: 2048 caacattgcaagattctttc 2029
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>emb|CR388146.9| Zebrafish DNA sequence from clone DKEY-205F14 in linkage group 5,
             complete sequence
          Length = 19924

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 95    caaaagtcctttctctaaaa 114
             ||||||||||||||||||||
Sbjct: 19888 caaaagtcctttctctaaaa 19907
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>emb|CR293500.7| Zebrafish DNA sequence from clone DKEY-211I20 in linkage group 18,
              complete sequence
          Length = 164140

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 95     caaaagtcctttctctaaaa 114
              ||||||||||||||||||||
Sbjct: 136757 caaaagtcctttctctaaaa 136776
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>emb|BX511020.10| Zebrafish DNA sequence from clone RP71-9C18, complete sequence
          Length = 160830

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 95    caaaagtcctttctctaaaa 114
             ||||||||||||||||||||
Sbjct: 17818 caaaagtcctttctctaaaa 17799
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>ref|XM_698012.1| PREDICTED: Danio rerio hypothetical protein LOC555615 (LOC555615),
           mRNA
          Length = 1101

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 469 cttctccatcattttctcatgtat 492
           ||||||||||||| ||||||||||
Sbjct: 795 cttctccatcattgtctcatgtat 772
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>emb|BX813317.11| Mouse DNA sequence from clone RP24-297H17 on chromosome 2, complete
             sequence
          Length = 157571

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 95    caaaagtcctttctctaaaa 114
             ||||||||||||||||||||
Sbjct: 90135 caaaagtcctttctctaaaa 90116
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>emb|AL807749.21| Zebrafish DNA sequence from clone CH211-197F20, complete sequence
          Length = 198777

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 95   caaaagtcctttctctaaaa 114
            ||||||||||||||||||||
Sbjct: 9459 caaaagtcctttctctaaaa 9478
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>emb|BX324003.7| Zebrafish DNA sequence from clone DKEY-81I14 in linkage group 17,
              complete sequence
          Length = 247607

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 95     caaaagtcctttctctaaaa 114
              ||||||||||||||||||||
Sbjct: 151546 caaaagtcctttctctaaaa 151527
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>emb|BX276122.23| Zebrafish DNA sequence from clone CH211-232H22, complete sequence
          Length = 186714

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 95     caaaagtcctttctctaaaa 114
              ||||||||||||||||||||
Sbjct: 182384 caaaagtcctttctctaaaa 182403
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>emb|AL732504.23| Mouse DNA sequence from clone RP23-177I18 on chromosome 4, complete
             sequence
          Length = 192031

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 360   ggacagttggaagaggtggc 379
             ||||||||||||||||||||
Sbjct: 53883 ggacagttggaagaggtggc 53864
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>gb|AC021889.29| Homo sapiens 3 BAC RP11-554F8 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 178752

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 53    attccttgtgttcaaaagat 72
             ||||||||||||||||||||
Sbjct: 60006 attccttgtgttcaaaagat 60025
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>emb|BX640584.10| Zebrafish DNA sequence from clone DKEY-78O7 in linkage group 14, complete
              sequence
          Length = 265520

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 95     caaaagtcctttctctaaaa 114
              ||||||||||||||||||||
Sbjct: 103155 caaaagtcctttctctaaaa 103136
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>gb|AC153774.3| Loxodonta africana clone VMRC15-554J14, complete sequence
          Length = 136822

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 340    ttcagcttcaatgtcatcag 359
              ||||||||||||||||||||
Sbjct: 133796 ttcagcttcaatgtcatcag 133815
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>emb|BX649616.5| Zebrafish DNA sequence from clone CH211-165K17 in linkage group 18,
              complete sequence
          Length = 131062

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 95     caaaagtcctttctctaaaa 114
              ||||||||||||||||||||
Sbjct: 117386 caaaagtcctttctctaaaa 117405
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>emb|AL928917.9| Zebrafish DNA sequence from clone CH211-103D12 in linkage group 1,
             complete sequence
          Length = 176961

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 469   cttctccatcattttctcatgtat 492
             ||||||||||||| ||||||||||
Sbjct: 83334 cttctccatcattgtctcatgtat 83311
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>emb|BX510947.20| Zebrafish DNA sequence from clone DKEY-226F16 in linkage group 4,
             complete sequence
          Length = 125275

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 95    caaaagtcctttctctaaaa 114
             ||||||||||||||||||||
Sbjct: 21736 caaaagtcctttctctaaaa 21717
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>emb|CR792418.18| Zebrafish DNA sequence from clone DKEY-59L11 in linkage group 4, complete
              sequence
          Length = 263674

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 95     caaaagtcctttctctaaaa 114
              ||||||||||||||||||||
Sbjct: 154217 caaaagtcctttctctaaaa 154236
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>emb|BX649283.16| Zebrafish DNA sequence from clone DKEYP-86C4 in linkage group 14,
             complete sequence
          Length = 193551

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 95    caaaagtcctttctctaaaa 114
             ||||||||||||||||||||
Sbjct: 14342 caaaagtcctttctctaaaa 14323
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>gb|U22443.1|EFU22443 Ellobius fuscocapillus sex-determining protein (Sry) gene, partial
           cds
          Length = 153

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 282 ccatttttccaggaggcaca 301
           ||||||||||||||||||||
Sbjct: 121 ccatttttccaggaggcaca 140


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,395,806
Number of Sequences: 3902068
Number of extensions: 4395806
Number of successful extensions: 85975
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 85836
Number of HSP's gapped (non-prelim): 139
length of query: 494
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 472
effective length of database: 17,147,199,772
effective search space: 8093478292384
effective search space used: 8093478292384
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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