Clone Information

BLAST Search Result

Clone Name	rbasd25h19
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ECR1_PYRAE (Q8ZVM8) Probable exosome complex RNA-binding protein 1	35	0.034
2	PCBP1_RABIT (O19048) Poly(rC)-binding protein 1 (Alpha-CP1) (hnR...	34	0.098
3	PCBP1_MOUSE (P60335) Poly(rC)-binding protein 1 (Alpha-CP1) (hnR...	34	0.098
4	PCBP1_HUMAN (Q15365) Poly(rC)-binding protein 1 (Alpha-CP1) (hnR...	34	0.098
5	FUBP2_RAT (Q99PF5) Far upstream element-binding protein 2 (FUSE-...	33	0.13
6	FUBP2_HUMAN (Q92945) Far upstream element-binding protein 2 (FUS...	33	0.13
7	RPE_MYCPN (P75522) Probable ribulose-phosphate 3-epimerase (EC 5...	33	0.13
8	PCBP2_HUMAN (Q15366) Poly(rC)-binding protein 2 (Alpha-CP2) (hnR...	33	0.17
9	PCBP2_MOUSE (Q61990) Poly(rC)-binding protein 2 (Alpha-CP2) (Put...	33	0.17
10	ZBP2_CHICK (Q8UVD9) Zipcode-binding protein 2	33	0.22
11	PCBP3_MOUSE (P57722) Poly(rC)-binding protein 3 (Alpha-CP3)	32	0.37
12	PCBP3_HUMAN (P57721) Poly(rC)-binding protein 3 (Alpha-CP3)	32	0.37
13	ECR1_METTH (O26780) Probable exosome complex RNA-binding protein 1	32	0.49
14	ECR1_METKA (Q8TYC0) Probable exosome complex RNA-binding protein 1	31	0.64
15	PDE3B_MOUSE (Q61409) cGMP-inhibited 3',5'-cyclic phosphodiestera...	31	0.64
16	PDE3B_HUMAN (Q13370) cGMP-inhibited 3',5'-cyclic phosphodiestera...	31	0.64
17	Y1756_CLOAB (Q97I96) UPF0109 protein CAC1756	30	1.1
18	VIGLN_MOUSE (Q8VDJ3) Vigilin (High density lipoprotein-binding p...	30	1.4
19	Y1711_CLOPE (Q8XJP5) UPF0109 protein CPE1711	30	1.4
20	MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, trac...	30	1.9
21	FUBP1_HUMAN (Q96AE4) Far upstream element-binding protein 1 (FUS...	30	1.9
22	FUBP1_MOUSE (Q91WJ8) Far upstream element-binding protein 1 (FUS...	30	1.9
23	ECR1_ARCFU (O29758) Probable exosome complex RNA-binding protein 1	30	1.9
24	VIGLN_HUMAN (Q00341) Vigilin (High density lipoprotein-binding p...	29	2.4
25	ZN207_HUMAN (O43670) Zinc finger protein 207	29	2.4
26	PDE3B_RAT (Q63085) cGMP-inhibited 3',5'-cyclic phosphodiesterase...	29	2.4
27	PHOL_MYCTU (P0A5S0) PhoH-like protein	29	3.2
28	PHOL_MYCBO (P0A5S1) PhoH-like protein	29	3.2
29	NU2M_RAT (P11662) NADH-ubiquinone oxidoreductase chain 2 (EC 1.6...	29	3.2
30	TDRKH_HUMAN (Q9Y2W6) Tudor and KH domain-containing protein	28	4.1
31	SALL2_HUMAN (Q9Y467) Sal-like protein 2 (Zinc finger protein SAL...	28	4.1
32	AKAP1_MOUSE (O08715) A kinase anchor protein 1, mitochondrial pr...	28	4.1
33	TDRKH_MOUSE (Q80VL1) Tudor and KH domain-containing protein	28	4.1
34	ENO_ENTHR (Q8GR70) Enolase (EC 4.2.1.11) (2-phosphoglycerate deh...	28	5.4
35	ENO_ENTFA (Q9K596) Enolase (EC 4.2.1.11) (2-phosphoglycerate deh...	28	5.4
36	NUSA_THECE (P29157) NusA protein homolog	28	5.4
37	AKAP1_RAT (O88884) A kinase anchor protein 1, mitochondrial prec...	28	5.4
38	BAT3_HUMAN (P46379) Large proline-rich protein BAT3 (HLA-B-assoc...	28	5.4
39	Y1460_THETN (Q8R9X2) UPF0109 protein TTE1460	28	7.0
40	Y1363_THEAC (Q9HIH6) Putative HTH-type transcriptional regulator...	28	7.0
41	PCBP4_MOUSE (P57724) Poly(rC)-binding protein 4 (Alpha-CP4)	28	7.0
42	PCBP4_HUMAN (P57723) Poly(rC)-binding protein 4 (Alpha-CP4)	28	7.0
43	VIGLN_RAT (Q9Z1A6) Vigilin (High density lipoprotein-binding pro...	27	9.2
44	RS3_WOLPM (Q73H92) 30S ribosomal protein S3	27	9.2
45	KTHY_XYLFA (Q9PFS7) Thymidylate kinase (EC 2.7.4.9) (dTMP kinase)	27	9.2
46	DNJB8_MOUSE (Q9QYI7) DnaJ homolog subfamily B member 8 (mDJ6)	27	9.2

>ECR1_PYRAE (Q8ZVM8) Probable exosome complex RNA-binding protein 1|
          Length = 235

 Score = 35.4 bits (80), Expect = 0.034
 Identities = 21/76 (27%), Positives = 45/76 (59%), Gaps = 6/76 (7%)
 Frame = -2

Query: 301 RVPEVDILSLLDVPPGKMGRVIGRKGSSIMAVKE-SCNVEIHXGG-----AKGPPDRVFI 140
           +V +V+  +++++ P K+ RVIG++GS +  + E  C++ +   G      K P D VF+
Sbjct: 140 KVGKVESGTVVEITPVKVPRVIGKRGSMLNTLMELGCDIVVGQNGRIWVKCKDPRDEVFL 199

Query: 139 IGPVKEVRKAEAILRG 92
              ++++ +AE+ + G
Sbjct: 200 ASLIRKI-EAESHVMG 214

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>PCBP1_RABIT (O19048) Poly(rC)-binding protein 1 (Alpha-CP1) (hnRNP-E1)|
          Length = 356

 Score = 33.9 bits (76), Expect = 0.098
 Identities = 15/58 (25%), Positives = 30/58 (51%)
 Frame = -2

Query: 253 KMGRVIGRKGSSIMAVKESCNVEIHXGGAKGPPDRVFIIGPVKEVRKAEAILRGRMLE 80
           ++G +IG+KG S+  ++E     I+      P   + + GP   + KA A++  ++ E
Sbjct: 24  EVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTNAIFKAFAMIIDKLEE 81



 Score = 27.3 bits (59), Expect = 9.2
 Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
 Frame = -2

Query: 271 LDVPPGKMGRVIGRKGSSIMAVKESCNVEIHXGG-AKGPPDR-VFIIGPVKEVRKAEAIL 98
           L +P   +G +IGR+G++I  +++    +I      +G   R V I G    +  A+ ++
Sbjct: 284 LTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLI 343

Query: 97  RGRM 86
             R+
Sbjct: 344 NARL 347

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>PCBP1_MOUSE (P60335) Poly(rC)-binding protein 1 (Alpha-CP1) (hnRNP-E1)|
          Length = 356

 Score = 33.9 bits (76), Expect = 0.098
 Identities = 15/58 (25%), Positives = 30/58 (51%)
 Frame = -2

Query: 253 KMGRVIGRKGSSIMAVKESCNVEIHXGGAKGPPDRVFIIGPVKEVRKAEAILRGRMLE 80
           ++G +IG+KG S+  ++E     I+      P   + + GP   + KA A++  ++ E
Sbjct: 24  EVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTNAIFKAFAMIIDKLEE 81



 Score = 27.3 bits (59), Expect = 9.2
 Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
 Frame = -2

Query: 271 LDVPPGKMGRVIGRKGSSIMAVKESCNVEIHXGG-AKGPPDR-VFIIGPVKEVRKAEAIL 98
           L +P   +G +IGR+G++I  +++    +I      +G   R V I G    +  A+ ++
Sbjct: 284 LTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLI 343

Query: 97  RGRM 86
             R+
Sbjct: 344 NARL 347

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>PCBP1_HUMAN (Q15365) Poly(rC)-binding protein 1 (Alpha-CP1) (hnRNP-E1) (Nucleic|
           acid-binding protein SUB2.3)
          Length = 356

 Score = 33.9 bits (76), Expect = 0.098
 Identities = 15/58 (25%), Positives = 30/58 (51%)
 Frame = -2

Query: 253 KMGRVIGRKGSSIMAVKESCNVEIHXGGAKGPPDRVFIIGPVKEVRKAEAILRGRMLE 80
           ++G +IG+KG S+  ++E     I+      P   + + GP   + KA A++  ++ E
Sbjct: 24  EVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTNAIFKAFAMIIDKLEE 81



 Score = 27.3 bits (59), Expect = 9.2
 Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
 Frame = -2

Query: 271 LDVPPGKMGRVIGRKGSSIMAVKESCNVEIHXGG-AKGPPDR-VFIIGPVKEVRKAEAIL 98
           L +P   +G +IGR+G++I  +++    +I      +G   R V I G    +  A+ ++
Sbjct: 284 LTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLI 343

Query: 97  RGRM 86
             R+
Sbjct: 344 NARL 347

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>FUBP2_RAT (Q99PF5) Far upstream element-binding protein 2 (FUSE-binding|
           protein 2) (KH type splicing regulatory protein) (KSRP)
           (MAP2 RNA trans-acting protein 1) (MARTA1)
          Length = 721

 Score = 33.5 bits (75), Expect = 0.13
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
 Frame = -2

Query: 295 PEVDILSLLDVPPGKMGRVIGRKGSSIMAVKE--SCNVEIHXGGAKGPPDRVFIIGPVKE 122
           P   +     VP G +G +IGR G  I  +++   C V+I       P   V + G  + 
Sbjct: 142 PRTSMTEEYRVPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPES 201

Query: 121 VRKAEAIL 98
           V+KA+ +L
Sbjct: 202 VQKAKMML 209



 Score = 27.3 bits (59), Expect = 9.2
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
 Frame = -2

Query: 265 VPPGKMGRVIGRKGSSIMAVKESCNVE---IHXGGAKGPPDR-VFIIGPVKEVRKA 110
           +P GK G VIG+ G +I  ++E   V+   I  G      D+ + IIG   +V++A
Sbjct: 241 IPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYKVQQA 296

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>FUBP2_HUMAN (Q92945) Far upstream element-binding protein 2 (FUSE-binding|
           protein 2) (KH type splicing regulatory protein) (KSRP)
           (p75)
          Length = 707

 Score = 33.5 bits (75), Expect = 0.13
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
 Frame = -2

Query: 295 PEVDILSLLDVPPGKMGRVIGRKGSSIMAVKE--SCNVEIHXGGAKGPPDRVFIIGPVKE 122
           P   +     VP G +G +IGR G  I  +++   C V+I       P   V + G  + 
Sbjct: 141 PRTSMTEEYRVPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPES 200

Query: 121 VRKAEAIL 98
           V+KA+ +L
Sbjct: 201 VQKAKMML 208



 Score = 27.3 bits (59), Expect = 9.2
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
 Frame = -2

Query: 265 VPPGKMGRVIGRKGSSIMAVKESCNVE---IHXGGAKGPPDR-VFIIGPVKEVRKA 110
           +P GK G VIG+ G +I  ++E   V+   I  G      D+ + IIG   +V++A
Sbjct: 240 IPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYKVQQA 295

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>RPE_MYCPN (P75522) Probable ribulose-phosphate 3-epimerase (EC 5.1.3.1)|
           (Pentose-5-phosphate 3-epimerase) (PPE) (R5P3E)
          Length = 215

 Score = 33.5 bits (75), Expect = 0.13
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = -2

Query: 355 RQIGHLFQTVPDDIEAEVRVPEVDILSLLDVPPGKMGRVIGRK--GSSIMAVKESCNVEI 182
           +Q+G  F+     +  E  V ++D ++L+ VPPGK G+        +   A K  C++EI
Sbjct: 115 KQVGLAFKFTTPLVNYERLVQQLDFVTLMSVPPGKGGQAFNSAVFNNLKQAHKYHCSIEI 174

Query: 181 HXG 173
             G
Sbjct: 175 DGG 177

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>PCBP2_HUMAN (Q15366) Poly(rC)-binding protein 2 (Alpha-CP2) (hnRNP-E2)|
          Length = 365

 Score = 33.1 bits (74), Expect = 0.17
 Identities = 15/58 (25%), Positives = 30/58 (51%)
 Frame = -2

Query: 253 KMGRVIGRKGSSIMAVKESCNVEIHXGGAKGPPDRVFIIGPVKEVRKAEAILRGRMLE 80
           ++G +IG+KG S+  ++E     I+      P   + + GP   + KA A++  ++ E
Sbjct: 24  EVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLEE 81



 Score = 28.1 bits (61), Expect = 5.4
 Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
 Frame = -2

Query: 271 LDVPPGKMGRVIGRKGSSIMAVKESCNVEIHXGG-AKGPPDR-VFIIGPVKEVRKAEAIL 98
           L +P   +G +IGR+G+ I  +++    +I      +G  DR V I G    +  A+ ++
Sbjct: 292 LTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLI 351

Query: 97  RGRM 86
             R+
Sbjct: 352 NVRL 355

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>PCBP2_MOUSE (Q61990) Poly(rC)-binding protein 2 (Alpha-CP2) (Putative|
           heterogeneous nuclear ribonucleoprotein X) (hnRNP X)
           (CTBP) (CBP)
          Length = 362

 Score = 33.1 bits (74), Expect = 0.17
 Identities = 15/58 (25%), Positives = 30/58 (51%)
 Frame = -2

Query: 253 KMGRVIGRKGSSIMAVKESCNVEIHXGGAKGPPDRVFIIGPVKEVRKAEAILRGRMLE 80
           ++G +IG+KG S+  ++E     I+      P   + + GP   + KA A++  ++ E
Sbjct: 24  EVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLEE 81



 Score = 28.1 bits (61), Expect = 5.4
 Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
 Frame = -2

Query: 271 LDVPPGKMGRVIGRKGSSIMAVKESCNVEIHXGG-AKGPPDR-VFIIGPVKEVRKAEAIL 98
           L +P   +G +IGR+G+ I  +++    +I      +G  DR V I G    +  A+ ++
Sbjct: 289 LTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLI 348

Query: 97  RGRM 86
             R+
Sbjct: 349 NVRL 352

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>ZBP2_CHICK (Q8UVD9) Zipcode-binding protein 2|
          Length = 769

 Score = 32.7 bits (73), Expect = 0.22
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
 Frame = -2

Query: 265 VPPGKMGRVIGRKGSSIMAVKE--SCNVEIHXGGAKGPPDRVFIIGPVKEVRKAEAIL 98
           VP G +G +IGR G  I  +++   C V+I       P   V + G  + V+KA+ +L
Sbjct: 215 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGSPEAVQKAKLML 272



 Score = 27.3 bits (59), Expect = 9.2
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
 Frame = -2

Query: 265 VPPGKMGRVIGRKGSSIMAVKESCNVE---IHXGGAKGPPDR-VFIIGPVKEVRKA 110
           +P GK G VIG+ G +I  ++E   V+   I  G      D+ + IIG   +V++A
Sbjct: 303 IPAGKAGLVIGKGGETIKQLQERAGVKMIFIQDGSQNTNVDKPLRIIGDPYKVQQA 358

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>PCBP3_MOUSE (P57722) Poly(rC)-binding protein 3 (Alpha-CP3)|
          Length = 339

 Score = 32.0 bits (71), Expect = 0.37
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = -2

Query: 253 KMGRVIGRKGSSIMAVKESCNVEIHXGGAKGPPDRVFIIGPVKEVRKAEAIL 98
           ++G +IG+KG ++  ++E     I+      P   V I GP   + KA A++
Sbjct: 24  EVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMI 75



 Score = 28.1 bits (61), Expect = 5.4
 Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
 Frame = -2

Query: 271 LDVPPGKMGRVIGRKGSSIMAVKESCNVEIHXGGA-KGPPDR-VFIIGPVKEVRKAEAIL 98
           L +P   +G +IGR+G+ I  +++    +I    A +G  +R + I G    +  A+ ++
Sbjct: 266 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLI 325

Query: 97  RGRM 86
             R+
Sbjct: 326 NARL 329

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>PCBP3_HUMAN (P57721) Poly(rC)-binding protein 3 (Alpha-CP3)|
          Length = 339

 Score = 32.0 bits (71), Expect = 0.37
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = -2

Query: 253 KMGRVIGRKGSSIMAVKESCNVEIHXGGAKGPPDRVFIIGPVKEVRKAEAIL 98
           ++G +IG+KG ++  ++E     I+      P   V I GP   + KA A++
Sbjct: 24  EVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMI 75



 Score = 28.1 bits (61), Expect = 5.4
 Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
 Frame = -2

Query: 271 LDVPPGKMGRVIGRKGSSIMAVKESCNVEIHXGGA-KGPPDR-VFIIGPVKEVRKAEAIL 98
           L +P   +G +IGR+G+ I  +++    +I    A +G  +R + I G    +  A+ ++
Sbjct: 266 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLI 325

Query: 97  RGRM 86
             R+
Sbjct: 326 NARL 329

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>ECR1_METTH (O26780) Probable exosome complex RNA-binding protein 1|
          Length = 311

 Score = 31.6 bits (70), Expect = 0.49
 Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
 Frame = -2

Query: 274 LLDVPPGKMGRVIGRKGSSIMAVKES--CNVEIHXGGA---KGPPD 152
           L+ + P K+ R+IG++GS I  VKE   C++ +   G    KG PD
Sbjct: 143 LVYITPTKVPRLIGKRGSMINMVKEKTHCDIVVGQNGVVWIKGEPD 188

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>ECR1_METKA (Q8TYC0) Probable exosome complex RNA-binding protein 1|
          Length = 239

 Score = 31.2 bits (69), Expect = 0.64
 Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 7/76 (9%)
 Frame = -2

Query: 313 EAEVRVPEVDILSLLDVPPGKMGRVIGRKGSSIMAVKE--SCNVEIHXGG-----AKGPP 155
           +A  R+  +    ++++ P K+ RVIGRKGS I  +K    C++ +   G     A+  P
Sbjct: 142 DAPTRLGRLQGGQVVEIDPVKVPRVIGRKGSMIKMLKRVLGCDIVVGANGRIYVRAREEP 201

Query: 154 DRVFIIGPVKEVRKAE 107
            +   +  V+ +R+ E
Sbjct: 202 KKERELLAVRAIREIE 217

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>PDE3B_MOUSE (Q61409) cGMP-inhibited 3',5'-cyclic phosphodiesterase B (EC|
           3.1.4.17) (Cyclic GMP-inhibited phosphodiesterase B)
           (CGI-PDE B) (CGIPDE1) (Fragment)
          Length = 799

 Score = 31.2 bits (69), Expect = 0.64
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = +3

Query: 69  FL*NSSIRPLRIASAFLTSFTGPMMNTLSGGPFAPPXWISTLQDSFTAIIDD 224
           F+  SS +  ++  +F+T   GP+ N+       P  WI T +   T   DD
Sbjct: 666 FMDRSSPQLAKLQESFITHIVGPLCNSYDAAGLLPGQWIETEEGDDTESDDD 717

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>PDE3B_HUMAN (Q13370) cGMP-inhibited 3',5'-cyclic phosphodiesterase B (EC|
            3.1.4.17) (Cyclic GMP-inhibited phosphodiesterase B)
            (CGI-PDE B) (CGIPDE1) (CGIP1)
          Length = 1112

 Score = 31.2 bits (69), Expect = 0.64
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = +3

Query: 69   FL*NSSIRPLRIASAFLTSFTGPMMNTLSGGPFAPPXWISTLQDSFTAIIDD 224
            F+  SS +  ++  +F+T   GP+ N+       P  W+   +D+ T   DD
Sbjct: 976  FMDRSSPQLAKLQESFITHIVGPLCNSYDAAGLLPGQWLEAEEDNDTESGDD 1027

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>Y1756_CLOAB (Q97I96) UPF0109 protein CAC1756|
          Length = 75

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -2

Query: 325 PDDIEAEVRVPEVDILSLLDVPPGKMGRVIGRKGSSIMAVK 203
           PD+++      E  I+  L V P  MG+VIG++G    A++
Sbjct: 16  PDEVQVSEVTGEQSIILELKVAPEDMGKVIGKQGRIAKAIR 56

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>VIGLN_MOUSE (Q8VDJ3) Vigilin (High density lipoprotein-binding protein)|
            (HDL-binding protein)
          Length = 1268

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 19/64 (29%), Positives = 31/64 (48%)
 Frame = -2

Query: 271  LDVPPGKMGRVIGRKGSSIMAVKESCNVEIHXGGAKGPPDRVFIIGPVKEVRKAEAILRG 92
            ++VP      +IG+KGS I  + +   V IH    +   D + I G    + +A+A L  
Sbjct: 977  VEVPFDLHRYIIGQKGSGIRKMMDEFEVNIHVPAPELQSDTIAITGLAANLDRAKAGLLD 1036

Query: 91   RMLE 80
            R+ E
Sbjct: 1037 RVKE 1040

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>Y1711_CLOPE (Q8XJP5) UPF0109 protein CPE1711|
          Length = 75

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -2

Query: 325 PDDIEAEVRVPEVDILSLLDVPPGKMGRVIGRKGSSIMAVK 203
           P+D+     + E  I+  L V P  MG+VIG++G    A++
Sbjct: 16  PEDVHVNEVLGEESIILELKVSPEDMGKVIGKQGRIAKAIR 56

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>MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, tracheobronchial)|
            (High molecular weight salivary mucin MG1) (Sublingual
            gland mucin)
          Length = 5703

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 22/77 (28%), Positives = 33/77 (42%)
 Frame = +3

Query: 99   RIASAFLTSFTGPMMNTLSGGPFAPPXWISTLQDSFTAIIDDPFLPITRPIFPGGTSKSE 278
            ++ +   T FT    ++  G    PP WIST     T         +T    P GT+ + 
Sbjct: 4533 KVPTTTTTGFTATPSSS-PGTALTPPVWISTTTTPTTTTPTTSGSTVTPSSIP-GTTHTA 4590

Query: 279  RISTSGTRTSASMSSGT 329
            R+ T+ T T A+ S  T
Sbjct: 4591 RVLTTTTTTVATGSMAT 4607

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>FUBP1_HUMAN (Q96AE4) Far upstream element-binding protein 1 (FUSE-binding|
           protein 1) (FBP) (DNA helicase V) (HDH V)
          Length = 643

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = -2

Query: 265 VPPGKMGRVIGRKGSSIMAVKE--SCNVEIHXGGAKGPPDRVFIIGPVKEVRKAEAIL 98
           VP G +G +IGR G  I  +++   C ++I       P     + G  + V+ A+ +L
Sbjct: 106 VPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLL 163

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>FUBP1_MOUSE (Q91WJ8) Far upstream element-binding protein 1 (FUSE-binding|
           protein 1) (FBP)
          Length = 651

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = -2

Query: 265 VPPGKMGRVIGRKGSSIMAVKE--SCNVEIHXGGAKGPPDRVFIIGPVKEVRKAEAIL 98
           VP G +G +IGR G  I  +++   C ++I       P     + G  + V+ A+ +L
Sbjct: 103 VPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLL 160

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>ECR1_ARCFU (O29758) Probable exosome complex RNA-binding protein 1|
          Length = 223

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = -2

Query: 274 LLDVPPGKMGRVIGRKGSSIMAVKESCNVEIHXG 173
           ++ + P ++ RVIG+KGS I  +K   +V+I  G
Sbjct: 139 IVAINPARVPRVIGKKGSMIKLLKSELDVQIVVG 172

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>VIGLN_HUMAN (Q00341) Vigilin (High density lipoprotein-binding protein)|
            (HDL-binding protein)
          Length = 1268

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 20/64 (31%), Positives = 31/64 (48%)
 Frame = -2

Query: 271  LDVPPGKMGRVIGRKGSSIMAVKESCNVEIHXGGAKGPPDRVFIIGPVKEVRKAEAILRG 92
            ++VP      VIG+KGS I  + +   V IH    +   D + I G    + +A+A L  
Sbjct: 977  VEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPELQSDIIAITGLAANLDRAKAGLLE 1036

Query: 91   RMLE 80
            R+ E
Sbjct: 1037 RVKE 1040

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>ZN207_HUMAN (O43670) Zinc finger protein 207|
          Length = 478

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 207 TAIIDDPFLPITRPIFPGGTSKSERISTSGTRTSASMS 320
           TA +  P  P+T+P+FP        +++S T +S S S
Sbjct: 240 TATVPAPQPPVTKPLFPSAGQMGTPVTSSSTASSNSES 277

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>PDE3B_RAT (Q63085) cGMP-inhibited 3',5'-cyclic phosphodiesterase B (EC|
            3.1.4.17) (Cyclic GMP-inhibited phosphodiesterase B)
            (CGI-PDE B) (CGIPDE1)
          Length = 1108

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 14/52 (26%), Positives = 23/52 (44%)
 Frame = +3

Query: 69   FL*NSSIRPLRIASAFLTSFTGPMMNTLSGGPFAPPXWISTLQDSFTAIIDD 224
            F+  SS +  ++  +F+T   GP+ N+       P  WI   +   T   DD
Sbjct: 958  FMDRSSPQLAKLQESFITHIVGPLCNSYDAAGLLPGQWIEAEEGDDTESDDD 1009

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>PHOL_MYCTU (P0A5S0) PhoH-like protein|
          Length = 352

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 16/71 (22%), Positives = 35/71 (49%)
 Frame = -2

Query: 310 AEVRVPEVDILSLLDVPPGKMGRVIGRKGSSIMAVKESCNVEIHXGGAKGPPDRVFIIGP 131
           A  R  +  + S +DVPP  +  ++G    ++ A++ + + ++H  G     + V + G 
Sbjct: 12  AGARQADAQVRSSIDVPPDLVVGLLGSADENLRALERTLSADLHVRG-----NAVTLCGE 66

Query: 130 VKEVRKAEAIL 98
             +V  AE ++
Sbjct: 67  PADVALAERVI 77

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>PHOL_MYCBO (P0A5S1) PhoH-like protein|
          Length = 352

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 16/71 (22%), Positives = 35/71 (49%)
 Frame = -2

Query: 310 AEVRVPEVDILSLLDVPPGKMGRVIGRKGSSIMAVKESCNVEIHXGGAKGPPDRVFIIGP 131
           A  R  +  + S +DVPP  +  ++G    ++ A++ + + ++H  G     + V + G 
Sbjct: 12  AGARQADAQVRSSIDVPPDLVVGLLGSADENLRALERTLSADLHVRG-----NAVTLCGE 66

Query: 130 VKEVRKAEAIL 98
             +V  AE ++
Sbjct: 67  PADVALAERVI 77

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>NU2M_RAT (P11662) NADH-ubiquinone oxidoreductase chain 2 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 2)
          Length = 345

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = +3

Query: 87  IRPLRIASAFLTSFTGPMMNTLSGGPFAPPXWISTLQDSFTAII 218
           + P+ +   +LT+F G ++ TLS     PP W+  L+ S  AII
Sbjct: 1   MNPITLTIIYLTTFKGRLITTLSTN--LPPMWVG-LEMSLLAII 41

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>TDRKH_HUMAN (Q9Y2W6) Tudor and KH domain-containing protein|
          Length = 606

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
 Frame = -2

Query: 322 DDIEAEVRVPEVDILSLLDVPPGKMGRVIGRKGSSIMAVKESCNVEIHXGGAKGPPDRVF 143
           DDIE E+RVP+  +             +IGR+G++I  +++     I         +RV 
Sbjct: 51  DDIEIEMRVPQEAVKL-----------IIGRQGANIKQLRKQTGARIDVDTEDVGDERVL 99

Query: 142 II-GPVKEVRKAEAILRGRMLE 80
           +I G   +V KA+A +   + E
Sbjct: 100 LISGFPVQVCKAKAAIHQILTE 121

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>SALL2_HUMAN (Q9Y467) Sal-like protein 2 (Zinc finger protein SALL2) (HSal2)|
          Length = 1007

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 23/57 (40%), Positives = 29/57 (50%)
 Frame = +3

Query: 156 GGPFAPPXWISTLQDSFTAIIDDPFLPITRPIFPGGTSKSERISTSGTRTSASMSSG 326
           G P +P    S L  + TA    P LP+  PI P  TSK+   S+S    S+S SSG
Sbjct: 218 GAPASP----SELPGTGTASSTKPLLPLFSPIKPVQTSKTLASSSS----SSSSSSG 266

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>AKAP1_MOUSE (O08715) A kinase anchor protein 1, mitochondrial precursor|
           (Protein kinase A-anchoring protein 1) (PRKA1)
           (Dual-specificity A-kinase-anchoring protein 1)
           (D-AKAP-1) (Spermatid A-kinase anchor protein) (S-AKAP)
          Length = 857

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 13/50 (26%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
 Frame = -2

Query: 325 PDDIEAEVRVPEVDILSL-LDVPPGKMGRVIGRKGSSIMAVKESCNVEIH 179
           P  ++A     +VD++   ++VP   +GR+IG++G  +  +K++   +I+
Sbjct: 547 PQSVQAGSNPKKVDLIIWEIEVPKHLVGRLIGKQGRYVSFLKQTSGAKIY 596

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>TDRKH_MOUSE (Q80VL1) Tudor and KH domain-containing protein|
          Length = 560

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
 Frame = -2

Query: 322 DDIEAEVRVPEVDILSLLDVPPGKMGRVIGRKGSSIMAVKESCNVEIHXGGAKGPPDRVF 143
           DDIE E+RVP+  +             +IGR+G++I  +++     I         +RV 
Sbjct: 51  DDIEIEMRVPQEAVKL-----------IIGRQGANIKQLRKQTGARIDVDTEDVGDERVL 99

Query: 142 II-GPVKEVRKAEAILRGRMLE 80
           +I G   +V KA+A +   + E
Sbjct: 100 LISGFPVQVCKAKAAIHQILTE 121



 Score = 27.7 bits (60), Expect = 7.0
 Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
 Frame = -2

Query: 307 EVRVPEVDILSLLDVPPGKMGRVIGRKGSSIMAVKESCNVEI----HXGGAKGPPDRVFI 140
           ++      +   L VP   +GR+IGR G +I ++ ++   +I       G       + I
Sbjct: 117 QILTENTPVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKI 176

Query: 139 IGPVKEVRKAEAILRGRMLE 80
            G  KEV  A+ ++  ++ E
Sbjct: 177 SGTQKEVAAAKHLILEKVSE 196

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>ENO_ENTHR (Q8GR70) Enolase (EC 4.2.1.11) (2-phosphoglycerate dehydratase)|
           (2-phospho-D-glycerate hydro-lyase)
          Length = 432

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 151 YLEAPLHHRYGFQHCKILSRPLLTIL 228
           YLE PL+H  G  + K+L  P++ I+
Sbjct: 125 YLEVPLYHYLGGFNTKVLPTPMMNII 150

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>ENO_ENTFA (Q9K596) Enolase (EC 4.2.1.11) (2-phosphoglycerate dehydratase)|
           (2-phospho-D-glycerate hydro-lyase)
          Length = 432

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 151 YLEAPLHHRYGFQHCKILSRPLLTIL 228
           YLE PL+H  G  + K+L  P++ I+
Sbjct: 125 YLEVPLYHYLGGFNTKVLPTPMMNII 150

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>NUSA_THECE (P29157) NusA protein homolog|
          Length = 145

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = -2

Query: 280 LSLLDVPPGKMGRVIGRKGSSIMAVKESCNVEIHXG 173
           ++LLD+ P +  R IGR G +I  VKE   +E H G
Sbjct: 105 VALLDIGPREKPRAIGRGGQNINLVKEL--MERHHG 138

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>AKAP1_RAT (O88884) A kinase anchor protein 1, mitochondrial precursor|
           (Protein kinase A-anchoring protein 1) (PRKA1) (A-kinase
           anchor protein 121 kDa) (AKAP 121) (Dual specificity
           A-kinase-anchoring protein 1) (D-AKAP-1) (Spermatid
           A-kinase anchor protei
          Length = 854

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 13/50 (26%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
 Frame = -2

Query: 325 PDDIEAEVRVPEVDILSL-LDVPPGKMGRVIGRKGSSIMAVKESCNVEIH 179
           P  ++A     +VD++   ++VP   +GR+IG++G  +  +K++   +I+
Sbjct: 544 PQTVQAGSNPKKVDLIIWEIEVPKHLVGRLIGKQGRYVSFLKQTSGAKIY 593

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>BAT3_HUMAN (P46379) Large proline-rich protein BAT3 (HLA-B-associated|
           transcript 3) (Protein G3)
          Length = 1132

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 8/62 (12%)
 Frame = +3

Query: 159 GPFAPPXWISTLQDSFTA--------IIDDPFLPITRPIFPGGTSKSERISTSGTRTSAS 314
           GP  PP    TL              +I  P  P  RP  PGG   S  +  +G  T+AS
Sbjct: 477 GPLGPPGHGQTLGQQVPGFPTAPTRVVIARPTPPQARPSHPGGPPVSGTLQGAGLGTNAS 536

Query: 315 MS 320
           ++
Sbjct: 537 LA 538

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>Y1460_THETN (Q8R9X2) UPF0109 protein TTE1460|
          Length = 75

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 7/56 (12%)
 Frame = -2

Query: 349 IGHLFQTV-------PDDIEAEVRVPEVDILSLLDVPPGKMGRVIGRKGSSIMAVK 203
           +G L +T+       PD +E         I+  L V P  MG+VIG++G    A++
Sbjct: 1   MGELVKTIAKALVDNPDAVEVNEIHGHQSIIIELKVAPEDMGKVIGKQGRIAQAIR 56

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>Y1363_THEAC (Q9HIH6) Putative HTH-type transcriptional regulatory protein|
           Ta1363
          Length = 312

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -2

Query: 340 LFQTVPDDIEAEVRVPEVDILSLLDV 263
           LF+ +PD+ + E RV +V I  LLD+
Sbjct: 189 LFKIIPDNFQEEERVDDVYIQMLLDI 214

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>PCBP4_MOUSE (P57724) Poly(rC)-binding protein 4 (Alpha-CP4)|
          Length = 403

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
 Frame = -2

Query: 265 VPPGKMGRVIGRKGSSIMAVKESCNVEIHXGG-AKGPPDR-VFIIGPVKEVRKAEAIL 98
           VP   +G VIGR+GS I  +++     I  G  A+G  +R V I G    +  A+ ++
Sbjct: 248 VPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLI 305

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>PCBP4_HUMAN (P57723) Poly(rC)-binding protein 4 (Alpha-CP4)|
          Length = 403

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
 Frame = -2

Query: 265 VPPGKMGRVIGRKGSSIMAVKESCNVEIHXGG-AKGPPDR-VFIIGPVKEVRKAEAIL 98
           VP   +G VIGR+GS I  +++     I  G  A+G  +R V I G    +  A+ ++
Sbjct: 248 VPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLI 305

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>VIGLN_RAT (Q9Z1A6) Vigilin (High density lipoprotein-binding protein)|
            (HDL-binding protein)
          Length = 1268

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 18/64 (28%), Positives = 30/64 (46%)
 Frame = -2

Query: 271  LDVPPGKMGRVIGRKGSSIMAVKESCNVEIHXGGAKGPPDRVFIIGPVKEVRKAEAILRG 92
            ++VP      +IG+KGS I  + +   V IH    +     + I G    + +A+A L  
Sbjct: 977  VEVPFDLHRYIIGQKGSGIRKMMDEFEVNIHVPAPELQSHTIAITGLAANLDRAKAGLLD 1036

Query: 91   RMLE 80
            R+ E
Sbjct: 1037 RVKE 1040

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>RS3_WOLPM (Q73H92) 30S ribosomal protein S3|
          Length = 204

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 6/48 (12%)
 Frame = -2

Query: 289 VDILSLLDVPPGKMGRVIGRKGSSIMAVKESC------NVEIHXGGAK 164
           +D++S++ +   + G +IG+KGS I  +K+        NVE++  G K
Sbjct: 59  IDLVSVI-IHSSRPGVIIGKKGSDIEKIKQKIAEKVKNNVEVNVVGVK 105

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>KTHY_XYLFA (Q9PFS7) Thymidylate kinase (EC 2.7.4.9) (dTMP kinase)|
          Length = 208

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -2

Query: 316 IEAEVRVPEVDILSLLDVPPGKMGRVIGRKGSS 218
           +EA    P  D+L LLDVPP    + I  +GS+
Sbjct: 110 LEANAFAPRPDVLLLLDVPPAIGLQRIWERGST 142

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>DNJB8_MOUSE (Q9QYI7) DnaJ homolog subfamily B member 8 (mDJ6)|
          Length = 227

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -1

Query: 290 SGYPFALRCASWKNGTRYWQKRIVNNGRERI 198
           SG+   +      NG +   KRI+ NG+ER+
Sbjct: 173 SGFKSVMSSTEMVNGRKVTTKRIIENGQERV 203


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,429,576
Number of Sequences: 219361
Number of extensions: 977291
Number of successful extensions: 3179
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 3073
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3177
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 1402043640
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result