ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd25h19 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK100223.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023047H21, full insert sequence Length = 1245 Score = 297 bits (150), Expect = 1e-77 Identities = 267/306 (87%), Gaps = 1/306 (0%) Strand = Plus / Minus Query: 72 ctctaaaattccagcattcggcccctcaggatagcctccgcctttctgacttccttcact 131 ||||| || |||||||| ||||| | ||||||||||| || ||||||||||||| |||| Sbjct: 1082 ctctagaactccagcatgcggcctcggaggatagcctcagcttttctgacttcctgcact 1023 Query: 132 ggtccaatgatgaataccctatctggaggcccctttgcaccaccgntatggatttcaaca 191 |||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||| Sbjct: 1022 ggtccaatgatgaataccctgtctggaggtccctttgcaccaccaatatggatttcaaca 963 Query: 192 ttgcaagattctttcacggccattattgacgatccttttctgccaataacgcgtcccatt 251 ||||||||| ||||||| |||||||||| |||||||||||||||||||| || |||||| Sbjct: 962 ttgcaagatgctttcacttccattattgatgatccttttctgccaataacacgccccatt 903 Query: 252 tttccaggaggcacatctaagagcgaaaggatatccacttcaggaacacggacttcagct 311 || |||||||||||||| |||| || ||||||||||| ||||||||| || |||| | Sbjct: 902 ttgccaggaggcacatccaagactgacaggatatccacctcaggaacataaacatcaggt 843 Query: 312 tcaatgtcatcagggacagtttggaanaggtggccaatctgcctgctggntgtnatttat 371 ||||| ||||||||||||| |||||| |||||||||||| || | || | ||| |||||| Sbjct: 842 tcaatttcatcagggacag-ttggaagaggtggccaatccgcatacttgttgtcatttat 784 Query: 372 gcaaaa 377 |||||| Sbjct: 783 gcaaaa 778
>ref|NM_193577.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1209 Score = 295 bits (149), Expect = 5e-77 Identities = 260/297 (87%), Gaps = 1/297 (0%) Strand = Plus / Minus Query: 81 tccagcattcggcccctcaggatagcctccgcctttctgacttccttcactggtccaatg 140 |||||||| ||||| | ||||||||||| || ||||||||||||| ||||||||||||| Sbjct: 1202 tccagcatgcggcctcggaggatagcctcagcttttctgacttcctgcactggtccaatg 1143 Query: 141 atgaataccctatctggaggcccctttgcaccaccgntatggatttcaacattgcaagat 200 ||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||| Sbjct: 1142 atgaataccctgtctggaggtccctttgcaccaccaatatggatttcaacattgcaagat 1083 Query: 201 tctttcacggccattattgacgatccttttctgccaataacgcgtcccatttttccagga 260 ||||||| |||||||||| |||||||||||||||||||| || |||||||| |||||| Sbjct: 1082 gctttcacttccattattgatgatccttttctgccaataacacgccccattttgccagga 1023 Query: 261 ggcacatctaagagcgaaaggatatccacttcaggaacacggacttcagcttcaatgtca 320 |||||||| |||| || ||||||||||| ||||||||| || |||| |||||| ||| Sbjct: 1022 ggcacatccaagactgacaggatatccacctcaggaacataaacatcaggttcaatttca 963 Query: 321 tcagggacagtttggaanaggtggccaatctgcctgctggntgtnatttatgcaaaa 377 |||||||||| |||||| |||||||||||| || | || | ||| |||||||||||| Sbjct: 962 tcagggacag-ttggaagaggtggccaatccgcatacttgttgtcatttatgcaaaa 907
>gb|BT017548.1| Zea mays clone EL01N0423H02.c mRNA sequence Length = 428 Score = 174 bits (88), Expect = 1e-40 Identities = 159/183 (86%) Strand = Plus / Minus Query: 71 tctctaaaattccagcattcggcccctcaggatagcctccgcctttctgacttccttcac 130 |||||| || |||||||||||||| || | ||| ||||| || || |||||||| ||||| Sbjct: 193 tctctagaactccagcattcggcctctgaagatggcctcggctttcctgacttcattcac 134 Query: 131 tggtccaatgatgaataccctatctggaggcccctttgcaccaccgntatggatttcaac 190 || |||||||||||| |||||||||||||||||||| |||||||| ||||||||||||| Sbjct: 133 tgatccaatgatgaaaaccctatctggaggccccttagcaccaccaatatggatttcaac 74 Query: 191 attgcaagattctttcacggccattattgacgatccttttctgccaataacgcgtcccat 250 ||||||||||||||||| ||||||| | || || |||||||||||||| |||||||| Sbjct: 73 gttgcaagattctttcacaaccattatagttgacccctttctgccaataactcgtcccat 14 Query: 251 ttt 253 ||| Sbjct: 13 ttt 11
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 119 bits (60), Expect = 7e-24 Identities = 96/108 (88%) Strand = Plus / Plus Query: 192 ttgcaagattctttcacggccattattgacgatccttttctgccaataacgcgtcccatt 251 ||||||||| ||||||| |||||||||| |||||||||||||||||||| || |||||| Sbjct: 21696325 ttgcaagatgctttcacttccattattgatgatccttttctgccaataacacgccccatt 21696384 Query: 252 tttccaggaggcacatctaagagcgaaaggatatccacttcaggaaca 299 || |||||||||||||| |||| || ||||||||||| ||||||||| Sbjct: 21696385 ttgccaggaggcacatccaagactgacaggatatccacctcaggaaca 21696432 Score = 83.8 bits (42), Expect = 4e-13 Identities = 69/78 (88%) Strand = Plus / Plus Query: 72 ctctaaaattccagcattcggcccctcaggatagcctccgcctttctgacttccttcact 131 ||||| || |||||||| ||||| | ||||||||||| || ||||||||||||| |||| Sbjct: 21695275 ctctagaactccagcatgcggcctcggaggatagcctcagcttttctgacttcctgcact 21695334 Query: 132 ggtccaatgatgaatacc 149 |||||||||||||||||| Sbjct: 21695335 ggtccaatgatgaatacc 21695352 Score = 65.9 bits (33), Expect = 9e-08 Identities = 47/52 (90%) Strand = Plus / Plus Query: 146 taccctatctggaggcccctttgcaccaccgntatggatttcaacattgcaa 197 |||||| |||||||| |||||||||||||| |||||||||||||| ||||| Sbjct: 21696183 taccctgtctggaggtccctttgcaccaccaatatggatttcaacactgcaa 21696234 Score = 46.1 bits (23), Expect = 0.081 Identities = 48/56 (85%), Gaps = 1/56 (1%) Strand = Plus / Plus Query: 322 cagggacagtttggaanaggtggccaatctgcctgctggntgtnatttatgcaaaa 377 ||||||||||| |||| |||||||||||| || | || | ||| |||||||||||| Sbjct: 21696812 cagggacagtt-ggaagaggtggccaatccgcatacttgttgtcatttatgcaaaa 21696866
>dbj|AP003141.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0002B05 Length = 141275 Score = 119 bits (60), Expect = 7e-24 Identities = 96/108 (88%) Strand = Plus / Plus Query: 192 ttgcaagattctttcacggccattattgacgatccttttctgccaataacgcgtcccatt 251 ||||||||| ||||||| |||||||||| |||||||||||||||||||| || |||||| Sbjct: 48376 ttgcaagatgctttcacttccattattgatgatccttttctgccaataacacgccccatt 48435 Query: 252 tttccaggaggcacatctaagagcgaaaggatatccacttcaggaaca 299 || |||||||||||||| |||| || ||||||||||| ||||||||| Sbjct: 48436 ttgccaggaggcacatccaagactgacaggatatccacctcaggaaca 48483 Score = 83.8 bits (42), Expect = 4e-13 Identities = 69/78 (88%) Strand = Plus / Plus Query: 72 ctctaaaattccagcattcggcccctcaggatagcctccgcctttctgacttccttcact 131 ||||| || |||||||| ||||| | ||||||||||| || ||||||||||||| |||| Sbjct: 47326 ctctagaactccagcatgcggcctcggaggatagcctcagcttttctgacttcctgcact 47385 Query: 132 ggtccaatgatgaatacc 149 |||||||||||||||||| Sbjct: 47386 ggtccaatgatgaatacc 47403 Score = 65.9 bits (33), Expect = 9e-08 Identities = 47/52 (90%) Strand = Plus / Plus Query: 146 taccctatctggaggcccctttgcaccaccgntatggatttcaacattgcaa 197 |||||| |||||||| |||||||||||||| |||||||||||||| ||||| Sbjct: 48234 taccctgtctggaggtccctttgcaccaccaatatggatttcaacactgcaa 48285 Score = 46.1 bits (23), Expect = 0.081 Identities = 48/56 (85%), Gaps = 1/56 (1%) Strand = Plus / Plus Query: 322 cagggacagtttggaanaggtggccaatctgcctgctggntgtnatttatgcaaaa 377 ||||||||||| |||| |||||||||||| || | || | ||| |||||||||||| Sbjct: 48863 cagggacagtt-ggaagaggtggccaatccgcatacttgttgtcatttatgcaaaa 48917
>ref|XM_741410.1| Aspergillus fumigatus Af293 hypothetical protein (Afu4g03170) partial mRNA Length = 564 Score = 46.1 bits (23), Expect = 0.081 Identities = 23/23 (100%) Strand = Plus / Plus Query: 225 ccttttctgccaataacgcgtcc 247 ||||||||||||||||||||||| Sbjct: 139 ccttttctgccaataacgcgtcc 161
>gb|BT013287.1| Lycopersicon esculentum clone 134897R, mRNA sequence Length = 1244 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 229 ttctgccaataacgcgtcccatttt 253 ||||||||||||| ||||||||||| Sbjct: 889 ttctgccaataacacgtcccatttt 865
>gb|DQ284465.1| Solanum tuberosum clone 096G02 3'-5' exonuclease domain-containing protein-like mRNA, complete cds Length = 1249 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 229 ttctgccaataacgcgtcccatttt 253 ||||||||||||| ||||||||||| Sbjct: 867 ttctgccaataacacgtcccatttt 843
>gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome Length = 2364842 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 205 tcacggccattattgacgat 224 |||||||||||||||||||| Sbjct: 939367 tcacggccattattgacgat 939386
>gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, complete sequence Length = 4837408 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 179 atggatttcaacattgcaag 198 |||||||||||||||||||| Sbjct: 4500152 atggatttcaacattgcaag 4500171
>emb|AL596179.3| Human DNA sequence from clone RP11-49A12 on chromosome 6, complete sequence Length = 169159 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 ctttctctaaaattccagca 87 |||||||||||||||||||| Sbjct: 112313 ctttctctaaaattccagca 112294
>emb|AL096863.13|HS1119I23 Human DNA sequence from clone RP5-1119I23 on chromosome 10, complete sequence Length = 98818 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 187 caacattgcaagattctttc 206 |||||||||||||||||||| Sbjct: 23506 caacattgcaagattctttc 23487
>emb|AL161982.1|HSM802585 Homo sapiens genomic DNA; cDNA DKFZp761J1224 (from clone DKFZp761J1224) Length = 5412 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 187 caacattgcaagattctttc 206 |||||||||||||||||||| Sbjct: 2048 caacattgcaagattctttc 2029
>gb|AC153774.3| Loxodonta africana clone VMRC15-554J14, complete sequence Length = 136822 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 305 ttcagcttcaatgtcatcag 324 |||||||||||||||||||| Sbjct: 133796 ttcagcttcaatgtcatcag 133815
>gb|AC023050.36| Homo sapiens 12 BAC RP11-428G5 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 186864 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 339 aggtggccaatctgcctgct 358 |||||||||||||||||||| Sbjct: 135063 aggtggccaatctgcctgct 135044
>gb|U22443.1|EFU22443 Ellobius fuscocapillus sex-determining protein (Sry) gene, partial cds Length = 153 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 247 ccatttttccaggaggcaca 266 |||||||||||||||||||| Sbjct: 121 ccatttttccaggaggcaca 140 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,679,784 Number of Sequences: 3902068 Number of extensions: 2679784 Number of successful extensions: 42591 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 42537 Number of HSP's gapped (non-prelim): 52 length of query: 377 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 355 effective length of database: 17,147,199,772 effective search space: 6087255919060 effective search space used: 6087255919060 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
