Clone Name | rbasd25h08 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_627368.1| Cryptosporidium parvum Iowa II hypothetical protein (cgd8_4840), partial mRNA Length = 7230 Score = 48.1 bits (24), Expect = 0.022 Identities = 24/24 (100%) Strand = Plus / Minus Query: 132 gaagttgaagttgtagctgttgat 155 |||||||||||||||||||||||| Sbjct: 6802 gaagttgaagttgtagctgttgat 6779
>emb|CR683301.2|CNS0FQ6P Tetraodon nigroviridis full-length cDNA Length = 815 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 323 tcaccttcttctccatggtct 343 ||||||||||||||||||||| Sbjct: 160 tcaccttcttctccatggtct 140
>ref|XM_660787.1| Cryptosporidium hominis TU502 Myb-like DNA-binding domain (Chro.80556) partial mRNA Length = 5922 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 132 gaagttgaagttgtagctgttgatg 156 |||| |||||||||||||||||||| Sbjct: 5524 gaagctgaagttgtagctgttgatg 5500
>emb|CR648095.2|CNS0EZ1H Tetraodon nigroviridis full-length cDNA Length = 1458 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 323 tcaccttcttctccatggtct 343 ||||||||||||||||||||| Sbjct: 852 tcaccttcttctccatggtct 832
>emb|CR639300.2|CNS0ES96 Tetraodon nigroviridis full-length cDNA Length = 1478 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 323 tcaccttcttctccatggtct 343 ||||||||||||||||||||| Sbjct: 861 tcaccttcttctccatggtct 841
>emb|CR962120.1|PTB065B04 Pan troglodytes chromosome X BAC PTB-065B04, complete sequence Length = 35005 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 57 attgatgataattaagataaa 77 ||||||||||||||||||||| Sbjct: 24109 attgatgataattaagataaa 24129
>emb|AL589794.7| Human DNA sequence from clone RP11-564C4 on chromosome 10 Contains the 3' end of the gene for apobec-1 complementation factor (ACF) (ASP), the gene for a novel protein similar to N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2 (ASAH2), the cathepsin L-like 2 (CTSLL2) pseudogene, three novel pseudogenes (KIAA1553), a novel gene, a protein geranylgeranyltransferase type I beta subunit (PGGT1B) pseudogene and a CpG island, complete sequence Length = 178899 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 324 caccttcttctccatggtctg 344 ||||||||||||||||||||| Sbjct: 47031 caccttcttctccatggtctg 47051
>gb|CP000083.1| Colwellia psychrerythraea 34H, complete genome Length = 5373180 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 60 gatgataattaagataaagcg 80 ||||||||||||||||||||| Sbjct: 319934 gatgataattaagataaagcg 319914
>gb|AC023702.4| Drosophila melanogaster X BAC RP98-24L2 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 159970 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 126 agtgtcgaagttgaagttgtagctg 150 ||||||||||||||||||| ||||| Sbjct: 118453 agtgtcgaagttgaagttgaagctg 118429
>gb|AC130390.4| Drosophila melanogaster X BAC RP98-21O19 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 184175 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 126 agtgtcgaagttgaagttgtagctg 150 ||||||||||||||||||| ||||| Sbjct: 59958 agtgtcgaagttgaagttgaagctg 59934
>gb|AE003448.4| Drosophila melanogaster chromosome X, section 32 of 74 of the complete sequence Length = 318665 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 126 agtgtcgaagttgaagttgtagctg 150 ||||||||||||||||||| ||||| Sbjct: 86847 agtgtcgaagttgaagttgaagctg 86823
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 248 tgctcctggtcgcgatggccatga 271 ||||||||| |||||||||||||| Sbjct: 20701156 tgctcctggccgcgatggccatga 20701133
>ref|XM_218601.3| PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ23311 (predicted) (LOC308607), mRNA Length = 3460 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 246 ggtgctcctggtcgcgatgg 265 |||||||||||||||||||| Sbjct: 264 ggtgctcctggtcgcgatgg 283
>dbj|AP003682.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0427B07 Length = 172058 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 248 tgctcctggtcgcgatggccatga 271 ||||||||| |||||||||||||| Sbjct: 123563 tgctcctggccgcgatggccatga 123540
>ref|XM_309208.2| Anopheles gambiae str. PEST ENSANGP00000005397 (ENSANGG00000004156), partial mRNA Length = 7809 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 140 agttgtagctgttgatgccg 159 |||||||||||||||||||| Sbjct: 2962 agttgtagctgttgatgccg 2943
>dbj|AK072932.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023144J15, full insert sequence Length = 842 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 248 tgctcctggtcgcgatggccatga 271 ||||||||| |||||||||||||| Sbjct: 591 tgctcctggccgcgatggccatga 614 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,597,798 Number of Sequences: 3902068 Number of extensions: 2597798 Number of successful extensions: 48805 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 48762 Number of HSP's gapped (non-prelim): 43 length of query: 394 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 372 effective length of database: 17,147,199,772 effective search space: 6378758315184 effective search space used: 6378758315184 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)