ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd25h06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT017901.1| Zea mays clone EL01N0516D04.c mRNA sequence 74 5e-10
2gb|AY104239.1| Zea mays PCO127742 mRNA sequence 74 5e-10
3gb|AC092076.7| Oryza sativa chromosome 3 BAC OSJNBb0021G19 genom... 68 3e-08
4gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 68 3e-08
5dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 68 3e-08
6dbj|AK104382.1| Oryza sativa (japonica cultivar-group) cDNA clon... 68 3e-08
7dbj|AK102390.1| Oryza sativa (japonica cultivar-group) cDNA clon... 68 3e-08
8dbj|AK071241.1| Oryza sativa (japonica cultivar-group) cDNA clon... 68 3e-08
9dbj|AK061765.1| Oryza sativa (japonica cultivar-group) cDNA clon... 68 3e-08
10ref|XM_476783.1| Oryza sativa (japonica cultivar-group), mRNA 62 2e-06
11ref|XM_476782.1| Oryza sativa (japonica cultivar-group), mRNA 62 2e-06
12ref|XM_507353.1| PREDICTED Oryza sativa (japonica cultivar-group... 62 2e-06
13ref|XM_506190.1| PREDICTED Oryza sativa (japonica cultivar-group... 62 2e-06
14dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 62 2e-06
15dbj|AP004670.4| Oryza sativa (japonica cultivar-group) genomic D... 62 2e-06
16dbj|AK098899.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 2e-06
17dbj|AK098856.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 2e-06
18dbj|AK065275.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 2e-06
19dbj|AK061624.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 2e-06
20gb|AF179418.1|AF179418 Xenopus laevis eomesodermin gene, promote... 44 0.44
21gb|AC060231.8| Homo sapiens chromosome 10 clone RP11-435G3, comp... 42 1.7
22gb|AC068327.14| Homo sapiens chromosome 15, clone RP11-394G8, co... 42 1.7
23gb|AC026583.10| Homo sapiens chromosome 15, clone RP11-20C17, co... 42 1.7
24emb|AL928658.6| Mouse DNA sequence from clone RP23-238A18 on chr... 42 1.7
25ref|XM_957463.1| Neurospora crassa OR74A hypothetical protein (N... 40 6.8
26ref|XM_326148.1| Neurospora crassa OR74A hypothetical protein (N... 40 6.8
27emb|BX537348.8| Zebrafish DNA sequence from clone CH211-218O21 i... 40 6.8
28emb|AL732556.7| Mouse DNA sequence from clone RP24-144L11 on chr... 40 6.8
29gb|AC106728.6| Homo sapiens 3 BAC RP11-319J24 (Roswell Park Canc... 40 6.8 
>gb|BT017901.1| Zea mays clone EL01N0516D04.c mRNA sequence
          Length = 1108

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 37/37 (100%)
 Strand = Plus / Minus

                                                
Query: 193 caacctaccgttgtagtcagtcgctacaaaacagggc 229
           |||||||||||||||||||||||||||||||||||||
Sbjct: 866 caacctaccgttgtagtcagtcgctacaaaacagggc 830



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                      
Query: 288 ctaccggtagtaagcctggtggaaggc 314
           |||||||||||||||||||||||||||
Sbjct: 748 ctaccggtagtaagcctggtggaaggc 722
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>gb|AY104239.1| Zea mays PCO127742 mRNA sequence
          Length = 1484

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 37/37 (100%)
 Strand = Plus / Minus

                                                 
Query: 193  caacctaccgttgtagtcagtcgctacaaaacagggc 229
            |||||||||||||||||||||||||||||||||||||
Sbjct: 1184 caacctaccgttgtagtcagtcgctacaaaacagggc 1148



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                       
Query: 288  ctaccggtagtaagcctggtggaaggc 314
            |||||||||||||||||||||||||||
Sbjct: 1066 ctaccggtagtaagcctggtggaaggc 1040
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>gb|AC092076.7| Oryza sativa chromosome 3 BAC OSJNBb0021G19 genomic sequence, complete
              sequence
          Length = 141582

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 58/66 (87%)
 Strand = Plus / Plus

                                                                          
Query: 437    ggtatgcatatggctccctcattgcaggtgggctctggccacagtagagggcgtgcccag 496
              |||||||||| ||||||||||||||  ||| | |||||||||||||||||| |||  |||
Sbjct: 119059 ggtatgcatagggctccctcattgccagtgtgttctggccacagtagagggggtgtgcag 119118

                    
Query: 497    ctggcc 502
              ||||||
Sbjct: 119119 ctggcc 119124



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 50/56 (89%), Gaps = 3/56 (5%)
 Strand = Plus / Plus

                                                                      
Query: 279    cgactgattctaccggtagtaagcctggtgg---aaggctggggacatggcattgc 331
              |||||||| ||||||||||||||||||||||   |||||||||| ||| |||||||
Sbjct: 118901 cgactgatcctaccggtagtaagcctggtggtgaaaggctggggccattgcattgc 118956



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                             
Query: 195    acctaccgttgtagtcagtcgctacaaaaca 225
              |||||||||||||||||||| ||||||||||
Sbjct: 118806 acctaccgttgtagtcagtcactacaaaaca 118836
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 58/66 (87%)
 Strand = Plus / Minus

                                                                            
Query: 437      ggtatgcatatggctccctcattgcaggtgggctctggccacagtagagggcgtgcccag 496
                |||||||||| ||||||||||||||  ||| | |||||||||||||||||| |||  |||
Sbjct: 32760482 ggtatgcatagggctccctcattgccagtgtgttctggccacagtagagggggtgtgcag 32760423

                      
Query: 497      ctggcc 502
                ||||||
Sbjct: 32760422 ctggcc 32760417



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 50/56 (89%), Gaps = 3/56 (5%)
 Strand = Plus / Minus

                                                                        
Query: 279      cgactgattctaccggtagtaagcctggtgg---aaggctggggacatggcattgc 331
                |||||||| ||||||||||||||||||||||   |||||||||| ||| |||||||
Sbjct: 32760640 cgactgatcctaccggtagtaagcctggtggtgaaaggctggggccattgcattgc 32760585



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                               
Query: 195      acctaccgttgtagtcagtcgctacaaaaca 225
                |||||||||||||||||||| ||||||||||
Sbjct: 32760735 acctaccgttgtagtcagtcactacaaaaca 32760705
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 58/66 (87%)
 Strand = Plus / Minus

                                                                            
Query: 437      ggtatgcatatggctccctcattgcaggtgggctctggccacagtagagggcgtgcccag 496
                |||||||||| ||||||||||||||  ||| | |||||||||||||||||| |||  |||
Sbjct: 32850992 ggtatgcatagggctccctcattgccagtgtgttctggccacagtagagggggtgtgcag 32850933

                      
Query: 497      ctggcc 502
                ||||||
Sbjct: 32850932 ctggcc 32850927



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 50/56 (89%), Gaps = 3/56 (5%)
 Strand = Plus / Minus

                                                                        
Query: 279      cgactgattctaccggtagtaagcctggtgg---aaggctggggacatggcattgc 331
                |||||||| ||||||||||||||||||||||   |||||||||| ||| |||||||
Sbjct: 32851150 cgactgatcctaccggtagtaagcctggtggtgaaaggctggggccattgcattgc 32851095



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                               
Query: 195      acctaccgttgtagtcagtcgctacaaaaca 225
                |||||||||||||||||||| ||||||||||
Sbjct: 32851245 acctaccgttgtagtcagtcactacaaaaca 32851215
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>dbj|AK104382.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-201-B02, full
           insert sequence
          Length = 1066

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 58/66 (87%)
 Strand = Plus / Minus

                                                                       
Query: 437 ggtatgcatatggctccctcattgcaggtgggctctggccacagtagagggcgtgcccag 496
           |||||||||| ||||||||||||||  ||| | |||||||||||||||||| |||  |||
Sbjct: 560 ggtatgcatagggctccctcattgccagtgtgttctggccacagtagagggggtgtgcag 501

                 
Query: 497 ctggcc 502
           ||||||
Sbjct: 500 ctggcc 495



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 50/56 (89%), Gaps = 3/56 (5%)
 Strand = Plus / Minus

                                                                   
Query: 279 cgactgattctaccggtagtaagcctggtgg---aaggctggggacatggcattgc 331
           |||||||| ||||||||||||||||||||||   |||||||||| ||| |||||||
Sbjct: 718 cgactgatcctaccggtagtaagcctggtggtgaaaggctggggccattgcattgc 663



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                          
Query: 195 acctaccgttgtagtcagtcgctacaaaaca 225
           |||||||||||||||||||| ||||||||||
Sbjct: 813 acctaccgttgtagtcagtcactacaaaaca 783
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>dbj|AK102390.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033092E14, full
            insert sequence
          Length = 2152

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 58/66 (87%)
 Strand = Plus / Minus

                                                                        
Query: 437  ggtatgcatatggctccctcattgcaggtgggctctggccacagtagagggcgtgcccag 496
            |||||||||| ||||||||||||||  ||| | |||||||||||||||||| |||  |||
Sbjct: 1648 ggtatgcatagggctccctcattgccagtgtgttctggccacagtagagggggtgtgcag 1589

                  
Query: 497  ctggcc 502
            ||||||
Sbjct: 1588 ctggcc 1583



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 50/56 (89%), Gaps = 3/56 (5%)
 Strand = Plus / Minus

                                                                    
Query: 279  cgactgattctaccggtagtaagcctggtgg---aaggctggggacatggcattgc 331
            |||||||| ||||||||||||||||||||||   |||||||||| ||| |||||||
Sbjct: 1806 cgactgatcctaccggtagtaagcctggtggtgaaaggctggggccattgcattgc 1751



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                           
Query: 195  acctaccgttgtagtcagtcgctacaaaaca 225
            |||||||||||||||||||| ||||||||||
Sbjct: 1901 acctaccgttgtagtcagtcactacaaaaca 1871
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>dbj|AK071241.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023086L15, full
           insert sequence
          Length = 1171

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 58/66 (87%)
 Strand = Plus / Minus

                                                                       
Query: 437 ggtatgcatatggctccctcattgcaggtgggctctggccacagtagagggcgtgcccag 496
           |||||||||| ||||||||||||||  ||| | |||||||||||||||||| |||  |||
Sbjct: 709 ggtatgcatagggctccctcattgccagtgtgttctggccacagtagagggggtgtgcag 650

                 
Query: 497 ctggcc 502
           ||||||
Sbjct: 649 ctggcc 644



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 50/56 (89%), Gaps = 3/56 (5%)
 Strand = Plus / Minus

                                                                   
Query: 279 cgactgattctaccggtagtaagcctggtgg---aaggctggggacatggcattgc 331
           |||||||| ||||||||||||||||||||||   |||||||||| ||| |||||||
Sbjct: 867 cgactgatcctaccggtagtaagcctggtggtgaaaggctggggccattgcattgc 812



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                          
Query: 195 acctaccgttgtagtcagtcgctacaaaaca 225
           |||||||||||||||||||| ||||||||||
Sbjct: 962 acctaccgttgtagtcagtcactacaaaaca 932
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>dbj|AK061765.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-B06, full
           insert sequence
          Length = 1066

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 58/66 (87%)
 Strand = Plus / Minus

                                                                       
Query: 437 ggtatgcatatggctccctcattgcaggtgggctctggccacagtagagggcgtgcccag 496
           |||||||||| ||||||||||||||  ||| | |||||||||||||||||| |||  |||
Sbjct: 560 ggtatgcatagggctccctcattgccagtgtgttctggccacagtagagggggtgtgcag 501

                 
Query: 497 ctggcc 502
           ||||||
Sbjct: 500 ctggcc 495



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 50/56 (89%), Gaps = 3/56 (5%)
 Strand = Plus / Minus

                                                                   
Query: 279 cgactgattctaccggtagtaagcctggtgg---aaggctggggacatggcattgc 331
           |||||||| ||||||||||||||||||||||   |||||||||| ||| |||||||
Sbjct: 718 cgactgatcctaccggtagtaagcctggtggtgaaaggctggggccattgcattgc 663



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                          
Query: 195 acctaccgttgtagtcagtcgctacaaaaca 225
           |||||||||||||||||||| ||||||||||
Sbjct: 813 acctaccgttgtagtcagtcactacaaaaca 783
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>ref|XM_476783.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1913

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 34/35 (97%)
 Strand = Plus / Minus

                                               
Query: 280  gactgattctaccggtagtaagcctggtggaaggc 314
            ||||||| |||||||||||||||||||||||||||
Sbjct: 1537 gactgatcctaccggtagtaagcctggtggaaggc 1503



 Score = 40.1 bits (20), Expect = 6.8
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Minus

                                            
Query: 193  caacctaccgt-tgtagtcagtcgctacaaaa 223
            ||||||||||| ||||||||||| ||||||||
Sbjct: 1644 caacctaccgtttgtagtcagtcactacaaaa 1613
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>ref|XM_476782.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2040

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 34/35 (97%)
 Strand = Plus / Minus

                                               
Query: 280  gactgattctaccggtagtaagcctggtggaaggc 314
            ||||||| |||||||||||||||||||||||||||
Sbjct: 1706 gactgatcctaccggtagtaagcctggtggaaggc 1672



 Score = 40.1 bits (20), Expect = 6.8
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Minus

                                            
Query: 193  caacctaccgtt-gtagtcagtcgctacaaaa 223
            |||||||||||| |||||||||| ||||||||
Sbjct: 1813 caacctaccgtttgtagtcagtcactacaaaa 1782
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>ref|XM_507353.1| PREDICTED Oryza sativa (japonica cultivar-group), P0496D04.23-2 mRNA
          Length = 2082

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 34/35 (97%)
 Strand = Plus / Minus

                                               
Query: 280  gactgattctaccggtagtaagcctggtggaaggc 314
            ||||||| |||||||||||||||||||||||||||
Sbjct: 1706 gactgatcctaccggtagtaagcctggtggaaggc 1672



 Score = 40.1 bits (20), Expect = 6.8
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Minus

                                            
Query: 193  caacctaccgtt-gtagtcagtcgctacaaaa 223
            |||||||||||| |||||||||| ||||||||
Sbjct: 1813 caacctaccgtttgtagtcagtcactacaaaa 1782
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>ref|XM_506190.1| PREDICTED Oryza sativa (japonica cultivar-group), P0496D04.23-2 mRNA
          Length = 2082

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 34/35 (97%)
 Strand = Plus / Minus

                                               
Query: 280  gactgattctaccggtagtaagcctggtggaaggc 314
            ||||||| |||||||||||||||||||||||||||
Sbjct: 1706 gactgatcctaccggtagtaagcctggtggaaggc 1672



 Score = 40.1 bits (20), Expect = 6.8
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Minus

                                            
Query: 193  caacctaccgtt-gtagtcagtcgctacaaaa 223
            |||||||||||| |||||||||| ||||||||
Sbjct: 1813 caacctaccgtttgtagtcagtcactacaaaa 1782
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 34/35 (97%)
 Strand = Plus / Plus

                                                  
Query: 280     gactgattctaccggtagtaagcctggtggaaggc 314
               ||||||| |||||||||||||||||||||||||||
Sbjct: 3879542 gactgatcctaccggtagtaagcctggtggaaggc 3879576



 Score = 40.1 bits (20), Expect = 6.8
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Plus

                                               
Query: 193     caacctaccgtt-gtagtcagtcgctacaaaa 223
               |||||||||||| |||||||||| ||||||||
Sbjct: 3879435 caacctaccgtttgtagtcagtcactacaaaa 3879466
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>dbj|AP004670.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0496D04
          Length = 197358

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 34/35 (97%)
 Strand = Plus / Plus

                                                 
Query: 280    gactgattctaccggtagtaagcctggtggaaggc 314
              ||||||| |||||||||||||||||||||||||||
Sbjct: 118654 gactgatcctaccggtagtaagcctggtggaaggc 118688



 Score = 40.1 bits (20), Expect = 6.8
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Plus

                                              
Query: 193    caacctaccgtt-gtagtcagtcgctacaaaa 223
              |||||||||||| |||||||||| ||||||||
Sbjct: 118547 caacctaccgtttgtagtcagtcactacaaaa 118578
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>dbj|AK098899.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002B06, full
            insert sequence
          Length = 2083

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 34/35 (97%)
 Strand = Plus / Minus

                                               
Query: 280  gactgattctaccggtagtaagcctggtggaaggc 314
            ||||||| |||||||||||||||||||||||||||
Sbjct: 1707 gactgatcctaccggtagtaagcctggtggaaggc 1673



 Score = 40.1 bits (20), Expect = 6.8
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Minus

                                            
Query: 193  caacctaccgtt-gtagtcagtcgctacaaaa 223
            |||||||||||| |||||||||| ||||||||
Sbjct: 1814 caacctaccgtttgtagtcagtcactacaaaa 1783
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>dbj|AK098856.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000J22, full
            insert sequence
          Length = 2040

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 34/35 (97%)
 Strand = Plus / Minus

                                               
Query: 280  gactgattctaccggtagtaagcctggtggaaggc 314
            ||||||| |||||||||||||||||||||||||||
Sbjct: 1706 gactgatcctaccggtagtaagcctggtggaaggc 1672



 Score = 40.1 bits (20), Expect = 6.8
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Minus

                                            
Query: 193  caacctaccgtt-gtagtcagtcgctacaaaa 223
            |||||||||||| |||||||||| ||||||||
Sbjct: 1813 caacctaccgtttgtagtcagtcactacaaaa 1782
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>dbj|AK065275.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002L11, full
            insert sequence
          Length = 2082

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 34/35 (97%)
 Strand = Plus / Minus

                                               
Query: 280  gactgattctaccggtagtaagcctggtggaaggc 314
            ||||||| |||||||||||||||||||||||||||
Sbjct: 1706 gactgatcctaccggtagtaagcctggtggaaggc 1672



 Score = 40.1 bits (20), Expect = 6.8
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Minus

                                            
Query: 193  caacctaccgtt-gtagtcagtcgctacaaaa 223
            |||||||||||| |||||||||| ||||||||
Sbjct: 1813 caacctaccgtttgtagtcagtcactacaaaa 1782
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>dbj|AK061624.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-C04, full
            insert sequence
          Length = 1939

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 34/35 (97%)
 Strand = Plus / Minus

                                               
Query: 280  gactgattctaccggtagtaagcctggtggaaggc 314
            ||||||| |||||||||||||||||||||||||||
Sbjct: 1563 gactgatcctaccggtagtaagcctggtggaaggc 1529



 Score = 40.1 bits (20), Expect = 6.8
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Minus

                                            
Query: 193  caacctaccgtt-gtagtcagtcgctacaaaa 223
            |||||||||||| |||||||||| ||||||||
Sbjct: 1670 caacctaccgtttgtagtcagtcactacaaaa 1639
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>gb|AF179418.1|AF179418 Xenopus laevis eomesodermin gene, promoter region
          Length = 8534

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 322  atggcattgccataggctccca 343
            ||||||||||||||||||||||
Sbjct: 3488 atggcattgccataggctccca 3509
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>gb|AC060231.8| Homo sapiens chromosome 10 clone RP11-435G3, complete sequence
          Length = 193519

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 37    gctttaaactgaattacaacacaaa 61
             ||||||||||||| |||||||||||
Sbjct: 79355 gctttaaactgaaatacaacacaaa 79331
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>gb|AC068327.14| Homo sapiens chromosome 15, clone RP11-394G8, complete sequence
          Length = 177539

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 461    caggtgggctctggccacagt 481
              |||||||||||||||||||||
Sbjct: 132590 caggtgggctctggccacagt 132610
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>gb|AC026583.10| Homo sapiens chromosome 15, clone RP11-20C17, complete sequence
          Length = 175472

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 461   caggtgggctctggccacagt 481
             |||||||||||||||||||||
Sbjct: 11472 caggtgggctctggccacagt 11492
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>emb|AL928658.6| Mouse DNA sequence from clone RP23-238A18 on chromosome 2, complete
              sequence
          Length = 220679

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 303    ctggtggaaggctggggacat 323
              |||||||||||||||||||||
Sbjct: 186457 ctggtggaaggctggggacat 186437
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>ref|XM_957463.1| Neurospora crassa OR74A hypothetical protein (NCU06294.1) partial
            mRNA
          Length = 9492

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 457  attgcaggtgggctctggcc 476
            ||||||||||||||||||||
Sbjct: 5821 attgcaggtgggctctggcc 5840
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>ref|XM_326148.1| Neurospora crassa OR74A hypothetical protein (NCU06294.1) partial
            mRNA
          Length = 9492

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 457  attgcaggtgggctctggcc 476
            ||||||||||||||||||||
Sbjct: 5821 attgcaggtgggctctggcc 5840
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>emb|BX537348.8| Zebrafish DNA sequence from clone CH211-218O21 in linkage group 8,
              complete sequence
          Length = 207282

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 42     aaactgaattacaacacaaa 61
              ||||||||||||||||||||
Sbjct: 159259 aaactgaattacaacacaaa 159278
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>emb|AL732556.7| Mouse DNA sequence from clone RP24-144L11 on chromosome 4 Contains the
             Tnc gene for tenascin C, the 5' end of a novel gene and a
             novel gene, complete sequence
          Length = 148021

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 219   caaaacagggcaccgttgac 238
             ||||||||||||||||||||
Sbjct: 46067 caaaacagggcaccgttgac 46086
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>gb|AC106728.6| Homo sapiens 3 BAC RP11-319J24 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 193623

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 56    cacaaaggtccacatacacg 75
             ||||||||||||||||||||
Sbjct: 51217 cacaaaggtccacatacacg 51198


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,417,525
Number of Sequences: 3902068
Number of extensions: 3417525
Number of successful extensions: 77052
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 76881
Number of HSP's gapped (non-prelim): 171
length of query: 502
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 480
effective length of database: 17,147,199,772
effective search space: 8230655890560
effective search space used: 8230655890560
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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