>M3K6_HUMAN (O95382) Mitogen-activated protein kinase kinase kinase 6 (EC|
           2.7.11.25)
          Length = 1011

 Score = 32.7 bits (73), Expect = 0.23
 Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = +3

Query: 96  AEKRSLQLRALSG*TRLQSSKQ--MRDPILSTQRPSLFPVSPRLACRPXNLPSGA 254
           AE ++  LR      RL++S Q  + DP L   + S  P SPR A RP + PS +
Sbjct: 600 AEAQAFLLRTFEPDPRLRASAQTLLGDPFLQPGKRSRSPSSPRHAPRPSDAPSAS 654

>Y2340_MYCBO (P64994) Hypothetical protein Mb2340c|
          Length = 284

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
 Frame = -2

Query: 246 RVGCXDDRRGEAKRGTNLVSVCLGWDPAFALRTVSVFNPTAPVIVGFSS--PHTSQLVVL 73
           RV    +  G  K     V+  + WD    L + +VFN   P +    +  P TS+LV L
Sbjct: 103 RVRAGLEALGVGKEYLGWVTGPISWDHNTDL-SAAVFNGFLPAVARMRALDPVTSELVRL 161

Query: 72  RGAAGRQAGLCR 37
           RGAA     +C+
Sbjct: 162 RGAAQHNCRVCK 173

>Y2313_MYCTU (P64993) Hypothetical protein Rv2313c/MT2376|
          Length = 284

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
 Frame = -2

Query: 246 RVGCXDDRRGEAKRGTNLVSVCLGWDPAFALRTVSVFNPTAPVIVGFSS--PHTSQLVVL 73
           RV    +  G  K     V+  + WD    L + +VFN   P +    +  P TS+LV L
Sbjct: 103 RVRAGLEALGVGKEYLGWVTGPISWDHNTDL-SAAVFNGFLPAVARMRALDPVTSELVRL 161

Query: 72  RGAAGRQAGLCR 37
           RGAA     +C+
Sbjct: 162 RGAAQHNCRVCK 173

>Y966_TREPA (O83932) Hypothetical protein TP0966 precursor|
          Length = 544

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 20/69 (28%), Positives = 26/69 (37%)
 Frame = +2

Query: 38  RHKPACRPAAPRKTTSCEVCGEEKPTITGAVGLNTLTVLKANAGSHPKHTETKFVPRFAS 217
           R     RP  P     C +CG     +  AVG     V      + P HT ++ VP    
Sbjct: 4   RRMLCARPWGP-SCVVCALCGA-LAALVPAVGAQEQAVPAPGTPAPPAHTASEAVPPAPE 61

Query: 218 PRLSSXQPT 244
           PR    QP+
Sbjct: 62  PRAEGEQPS 70

>GLYA2_PSEU2 (Q4ZM83) Serine hydroxymethyltransferase 2 (EC 2.1.2.1) (Serine|
           methylase 2) (SHMT 2)
          Length = 417

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +1

Query: 142 AYSPQSKCGIPS*AHRDQVCSPFRLASPVVXATYPQVHFTVEAPGWICPLL 294
           A+   +K  +P+      V S  R+ +P V     +V   VE  GWIC +L
Sbjct: 340 AHITVNKNSVPNDPQSPFVTSGLRIGTPAVTTRGFKVTQCVELAGWICDIL 390

>GLYA2_PSE14 (Q48CP3) Serine hydroxymethyltransferase 2 (EC 2.1.2.1) (Serine|
           methylase 2) (SHMT 2)
          Length = 417

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +1

Query: 142 AYSPQSKCGIPS*AHRDQVCSPFRLASPVVXATYPQVHFTVEAPGWICPLL 294
           A+   +K  +P+      V S  R+ +P V     +V   VE  GWIC +L
Sbjct: 340 AHITVNKNSVPNDPQSPFVTSGLRIGTPAVTTRGFKVTQCVELAGWICDIL 390

>NRIP3_HUMAN (Q9NQ35) Nuclear receptor-interacting protein 3 (Sarcoma antigen|
           NY-SAR-105)
          Length = 241

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = +3

Query: 12  VTNDNNDQGDISQPAALQHLVR-QQAVKYAEKRSLQLRALSG*TRLQSSKQMR 167
           +T     + D+ + A+L+   R +QAV++  K S  L  L G  +L SSK M+
Sbjct: 7   LTEGGRKETDMREAASLRQQRRMKQAVQFIHKDSADLLPLDGLKKLGSSKDMQ 59

>GLYA1_PSESM (Q88AD1) Serine hydroxymethyltransferase 1 (EC 2.1.2.1) (Serine|
           methylase 1) (SHMT 1)
          Length = 417

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = +1

Query: 142 AYSPQSKCGIPS*AHRDQVCSPFRLASPVVXATYPQVHFTVEAPGWICPLL 294
           A+   +K  +P+      V S  R+ +P V     +V   +E  GWIC +L
Sbjct: 340 AHITVNKNSVPNDPQSPFVTSGLRIGTPAVTTRGFKVTQCIELAGWICDIL 390

>CBL10_ARATH (Q9LJU0) COBRA-like protein 10 precursor|
          Length = 672

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +2

Query: 59  PAAPRKTTSCEVCGEEKPTITGAVGLNT 142
           PAA RK  S  VC +  P I   +GL T
Sbjct: 194 PAAKRKGGSMHVCCKRNPKIKNKIGLKT 221


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,672,709
Number of Sequences: 219361
Number of extensions: 890913
Number of successful extensions: 2513
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2513
length of database: 80,573,946
effective HSP length: 88
effective length of database: 61,270,178
effective search space used: 1470484272
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)